Wall clock time and date at job start Tue Mar 31 2020 17:27:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47595 * 2 1 4 4 C 1.53002 * 109.47450 * 179.97438 * 3 2 1 5 5 O 1.45192 * 109.46996 * 179.97438 * 4 3 2 6 6 C 1.34236 * 116.99633 * 180.02562 * 5 4 3 7 7 O 1.20827 * 120.00101 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99773 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.47092 * 179.97438 * 8 6 5 10 10 C 1.34782 * 120.00204 * 180.02562 * 9 8 6 11 11 O 1.21581 * 119.99512 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.37185 * 120.00212 * 359.97438 * 12 10 9 14 14 H 1.07997 * 120.00257 * 41.84750 * 13 12 10 15 15 C 1.38884 * 120.00110 * 221.84524 * 13 12 10 16 16 N 1.31469 * 119.99744 * 17.20726 * 15 13 12 17 17 Si 1.86798 * 119.99976 * 197.20427 * 15 13 12 18 18 H 1.48507 * 109.47179 * 60.00043 * 17 15 13 19 19 H 1.48507 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47158 * 299.99986 * 17 15 13 21 21 C 1.46507 * 119.99742 * 179.97438 * 12 10 9 22 22 C 1.50692 * 109.47327 * 274.65404 * 21 12 10 23 23 C 1.38234 * 120.00212 * 90.18061 * 22 21 12 24 24 C 1.38231 * 120.00352 * 179.97438 * 23 22 21 25 25 C 1.38235 * 119.99892 * 359.97438 * 24 23 22 26 26 C 1.38232 * 120.00015 * 0.28180 * 25 24 23 27 27 C 1.38237 * 119.99932 * 270.16181 * 22 21 12 28 28 H 1.09009 * 109.46713 * 60.00339 * 1 2 3 29 29 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47025 * 300.00892 * 1 2 3 31 31 H 1.09003 * 109.47410 * 239.99091 * 2 1 3 32 32 H 1.08999 * 109.46771 * 119.99723 * 2 1 3 33 33 H 1.09007 * 109.47233 * 59.99550 * 3 2 1 34 34 H 1.08999 * 109.46835 * 299.99684 * 3 2 1 35 35 H 1.09000 * 109.46594 * 59.99766 * 4 3 2 36 36 H 1.09000 * 109.46939 * 300.00373 * 4 3 2 37 37 H 1.09004 * 109.47048 * 60.00371 * 8 6 5 38 38 H 1.08996 * 109.47488 * 300.00256 * 8 6 5 39 39 H 0.96994 * 120.00088 * 0.02562 * 9 8 6 40 40 H 0.96999 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46699 * 154.65242 * 21 12 10 42 42 H 1.08997 * 109.46903 * 34.65640 * 21 12 10 43 43 H 1.08002 * 119.99943 * 359.97438 * 23 22 21 44 44 H 1.07998 * 120.00298 * 180.02562 * 24 23 22 45 45 H 1.08005 * 120.00342 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.00469 * 179.72467 * 26 25 24 47 47 H 1.07995 * 120.00126 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0541 2.8112 0.0000 6 6 5.3849 2.9870 0.0000 7 8 6.1209 2.0288 0.0009 8 6 5.9609 4.3796 -0.0001 9 7 7.4239 4.3029 0.0004 10 6 8.1580 5.4332 0.0010 11 8 7.6061 6.5165 0.0006 12 7 9.5039 5.3626 0.0010 13 6 10.1267 4.1402 0.0009 14 1 9.7510 3.3428 -0.6231 15 6 11.2403 3.9281 0.8033 16 7 11.5005 4.7489 1.7968 17 14 12.3682 2.4767 0.4708 18 1 12.9296 2.5897 -0.8994 19 1 13.4757 2.4737 1.4602 20 1 11.5965 1.2133 0.5870 21 6 10.3019 6.5913 0.0011 22 6 10.4788 7.0754 -1.4149 23 6 9.5613 7.9503 -1.9660 24 6 9.7239 8.3949 -3.2647 25 6 10.8043 7.9650 -4.0123 26 6 11.7189 7.0860 -3.4631 27 6 11.5588 6.6450 -2.1627 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9283 -0.8891 36 1 3.9330 0.9286 0.8908 37 1 5.6251 4.9117 0.8900 38 1 5.6250 4.9118 -0.8900 39 1 7.8642 3.4386 0.0004 40 1 12.2785 4.6010 2.3569 41 1 11.2787 6.3900 0.4410 42 1 9.7909 7.3563 0.5855 43 1 8.7175 8.2866 -1.3818 44 1 9.0073 9.0788 -3.6951 45 1 10.9316 8.3127 -5.0269 46 1 12.5605 6.7466 -4.0486 47 1 12.2760 5.9620 -1.7320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188267144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:11 Heat of formation + Delta-G solvation = -95.413460 kcal Electronic energy + Delta-G solvation = -28351.450920 eV Core-core repulsion = 24306.285659 eV Total energy + Delta-G solvation = -4045.165261 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48422 -39.16455 -38.16279 -36.92178 -35.22244 -34.97283 -33.61853 -31.82243 -30.73134 -30.22432 -29.93210 -27.62060 -25.65075 -24.40911 -23.65462 -21.85899 -21.48503 -21.09432 -20.50981 -19.54419 -18.25447 -17.10246 -16.97103 -16.89607 -16.06384 -15.58834 -15.55238 -15.00482 -14.72173 -14.44029 -14.31177 -14.27774 -14.00656 -13.70766 -13.53919 -13.20556 -12.80662 -12.76159 -12.65794 -12.22520 -12.14679 -11.95840 -11.83456 -11.61616 -11.46825 -11.38740 -11.24744 -11.08776 -10.92338 -10.76109 -10.58558 -10.45493 -10.39857 -10.29394 -10.09559 -9.31232 -8.78656 -8.29695 -8.26171 -8.07693 -7.41860 -6.35539 -4.11096 1.98465 2.05726 2.26574 2.50403 3.16073 3.22252 3.24820 3.92225 4.20972 4.34252 4.44841 4.51503 4.55966 4.66448 4.92539 4.95062 5.01909 5.16488 5.22037 5.45114 5.45332 5.46851 5.52943 5.57271 5.60192 5.64443 5.67148 5.73807 5.79235 5.87060 5.94732 5.95811 6.16635 6.24757 6.39312 6.48654 6.67339 6.80946 7.08673 7.11364 7.18801 7.34534 7.42705 7.50581 7.68509 7.79632 7.97702 8.20823 8.51614 9.11502 9.70630 10.06886 10.68272 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.002827 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.108465 B = 9901.160190 C =11466.592513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.123 4.123 3 C -0.120 4.120 4 C 0.065 3.935 5 O -0.357 6.357 6 C 0.458 3.542 7 O -0.499 6.499 8 C 0.155 3.845 9 N -0.741 5.741 10 C 0.687 3.313 11 O -0.639 6.639 12 N -0.456 5.456 13 C -0.339 4.339 14 H 0.081 0.919 15 C 0.048 3.952 16 N -0.861 5.861 17 Si 0.910 3.090 18 H -0.272 1.272 19 H -0.284 1.284 20 H -0.272 1.272 21 C 0.173 3.827 22 C -0.081 4.081 23 C -0.100 4.100 24 C -0.134 4.134 25 C -0.135 4.135 26 C -0.134 4.134 27 C -0.098 4.098 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.070 0.930 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.412 0.588 40 H 0.269 0.731 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.127 0.873 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.112 0.888 47 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.008 -3.650 -5.018 13.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.161 4.161 3 C -0.158 4.158 4 C -0.009 4.009 5 O -0.274 6.274 6 C 0.301 3.699 7 O -0.386 6.386 8 C 0.028 3.972 9 N -0.403 5.403 10 C 0.390 3.610 11 O -0.524 6.524 12 N -0.178 5.178 13 C -0.467 4.467 14 H 0.099 0.901 15 C -0.158 4.158 16 N -0.497 5.497 17 Si 0.737 3.263 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.197 1.197 21 C 0.049 3.951 22 C -0.083 4.083 23 C -0.119 4.119 24 C -0.152 4.152 25 C -0.154 4.154 26 C -0.152 4.152 27 C -0.116 4.116 28 H 0.075 0.925 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.145 0.855 44 H 0.129 0.871 45 H 0.128 0.872 46 H 0.130 0.870 47 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -12.026 -3.206 -4.822 13.347 hybrid contribution 0.891 -1.457 -0.193 1.719 sum -11.135 -4.663 -5.015 13.072 Atomic orbital electron populations 1.21747 0.95170 1.01827 1.02108 1.21440 0.96370 0.95646 1.02594 1.21614 0.92450 0.97800 1.03889 1.23096 0.94765 0.80232 1.02780 1.86465 1.24339 1.32263 1.84284 1.23892 0.80636 0.93062 0.72340 1.90682 1.60159 1.42904 1.44847 1.20222 0.82963 0.88844 1.05135 1.44724 1.02866 1.10319 1.82417 1.15935 0.82735 0.82692 0.79656 1.90719 1.71887 1.27232 1.62520 1.42380 1.00760 1.05573 1.69073 1.19169 1.13442 0.89899 1.24173 0.90145 1.25367 0.99142 0.97930 0.93390 1.69939 1.27327 1.37984 1.14451 0.86267 0.79899 0.81824 0.78349 1.19772 1.20911 1.19672 1.20174 0.98817 0.86302 0.89837 1.20746 0.93782 0.95138 0.98637 1.21305 0.98610 0.96924 0.95011 1.21052 0.98073 1.01103 0.95004 1.20958 0.95846 0.99357 0.99222 1.21037 0.99461 0.98903 0.95777 1.21125 0.98030 0.98634 0.93847 0.92527 0.92518 0.92515 0.91604 0.91580 0.90651 0.90678 0.91183 0.91119 0.88108 0.88225 0.74868 0.92044 0.87529 0.91934 0.85528 0.87079 0.87240 0.87034 0.86219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.91 37.16 0.37 -0.52 16 2 C -0.12 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.12 -0.98 5.59 -26.73 -0.15 -1.13 16 4 C 0.07 0.71 5.47 37.16 0.20 0.91 16 5 O -0.36 -4.78 10.22 -39.27 -0.40 -5.18 16 6 C 0.46 7.28 8.03 36.01 0.29 7.57 16 7 O -0.50 -9.26 15.42 -18.75 -0.29 -9.55 16 8 C 0.16 2.61 6.27 -5.20 -0.03 2.58 16 9 N -0.74 -15.72 5.42 -66.42 -0.36 -16.08 16 10 C 0.69 16.71 8.20 -86.92 -0.71 16.00 16 11 O -0.64 -16.15 14.86 5.29 0.08 -16.08 16 12 N -0.46 -11.37 2.49 -121.47 -0.30 -11.68 16 13 C -0.34 -8.56 8.39 -14.92 -0.13 -8.69 16 14 H 0.08 2.01 7.12 -52.49 -0.37 1.64 16 15 C 0.05 1.20 4.98 -17.47 -0.09 1.12 16 16 N -0.86 -22.44 11.59 55.49 0.64 -21.80 16 17 Si 0.91 19.57 29.59 -169.99 -5.03 14.54 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C 0.17 4.09 5.02 -5.19 -0.03 4.06 16 22 C -0.08 -1.73 5.43 -104.63 -0.57 -2.30 16 23 C -0.10 -1.99 9.40 -39.59 -0.37 -2.36 16 24 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 25 C -0.14 -2.18 10.05 -39.58 -0.40 -2.58 16 26 C -0.13 -2.28 10.05 -39.58 -0.40 -2.68 16 27 C -0.10 -1.93 9.70 -39.58 -0.38 -2.31 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 34 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.07 0.76 8.13 -51.93 -0.42 0.34 16 36 H 0.07 0.78 8.13 -51.93 -0.42 0.35 16 37 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 38 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 39 H 0.41 9.06 5.61 -40.82 -0.23 8.83 16 40 H 0.27 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.11 2.65 5.71 -51.93 -0.30 2.35 16 42 H 0.06 1.52 7.51 -51.93 -0.39 1.13 16 43 H 0.13 2.62 7.23 -52.49 -0.38 2.24 16 44 H 0.11 1.61 8.06 -52.49 -0.42 1.19 16 45 H 0.11 1.44 8.06 -52.48 -0.42 1.01 16 46 H 0.11 1.61 8.06 -52.49 -0.42 1.18 16 47 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -29.66 396.61 -9.77 -39.44 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -7.14 Total: 14.43 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -2.95 Total: 5.98 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: -0.02 Total: -49.56 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.61 Total: -30.81 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -5.03 Total: 14.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.66 -9.77 -39.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188267144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.974 kcal (2) G-P(sol) polarization free energy of solvation -29.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds