Wall clock time and date at job start Tue Mar 31 2020 17:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47595 * 2 1 4 4 C 1.53002 * 109.47450 * 179.97438 * 3 2 1 5 5 O 1.45192 * 109.46996 * 179.97438 * 4 3 2 6 6 C 1.34236 * 116.99633 * 180.02562 * 5 4 3 7 7 O 1.20827 * 120.00101 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99773 * 180.02562 * 6 5 4 9 9 N 1.46496 * 109.47092 * 179.97438 * 8 6 5 10 10 C 1.34782 * 120.00204 * 180.02562 * 9 8 6 11 11 O 1.21581 * 119.99512 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99917 * 180.02562 * 10 9 8 13 13 C 1.37185 * 120.00212 * 359.97438 * 12 10 9 14 14 H 1.07997 * 120.00257 * 41.84750 * 13 12 10 15 15 C 1.38884 * 120.00110 * 221.84524 * 13 12 10 16 16 N 1.31469 * 119.99744 * 17.20726 * 15 13 12 17 17 Si 1.86798 * 119.99976 * 197.20427 * 15 13 12 18 18 H 1.48507 * 109.47179 * 60.00043 * 17 15 13 19 19 H 1.48507 * 109.46979 * 179.97438 * 17 15 13 20 20 H 1.48498 * 109.47158 * 299.99986 * 17 15 13 21 21 C 1.46507 * 119.99742 * 179.97438 * 12 10 9 22 22 C 1.50692 * 109.47327 * 274.65404 * 21 12 10 23 23 C 1.38234 * 120.00212 * 90.18061 * 22 21 12 24 24 C 1.38231 * 120.00352 * 179.97438 * 23 22 21 25 25 C 1.38235 * 119.99892 * 359.97438 * 24 23 22 26 26 C 1.38232 * 120.00015 * 0.28180 * 25 24 23 27 27 C 1.38237 * 119.99932 * 270.16181 * 22 21 12 28 28 H 1.09009 * 109.46713 * 60.00339 * 1 2 3 29 29 H 1.08996 * 109.47443 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47025 * 300.00892 * 1 2 3 31 31 H 1.09003 * 109.47410 * 239.99091 * 2 1 3 32 32 H 1.08999 * 109.46771 * 119.99723 * 2 1 3 33 33 H 1.09007 * 109.47233 * 59.99550 * 3 2 1 34 34 H 1.08999 * 109.46835 * 299.99684 * 3 2 1 35 35 H 1.09000 * 109.46594 * 59.99766 * 4 3 2 36 36 H 1.09000 * 109.46939 * 300.00373 * 4 3 2 37 37 H 1.09004 * 109.47048 * 60.00371 * 8 6 5 38 38 H 1.08996 * 109.47488 * 300.00256 * 8 6 5 39 39 H 0.96994 * 120.00088 * 0.02562 * 9 8 6 40 40 H 0.96999 * 119.99755 * 180.02562 * 16 15 13 41 41 H 1.09001 * 109.46699 * 154.65242 * 21 12 10 42 42 H 1.08997 * 109.46903 * 34.65640 * 21 12 10 43 43 H 1.08002 * 119.99943 * 359.97438 * 23 22 21 44 44 H 1.07998 * 120.00298 * 180.02562 * 24 23 22 45 45 H 1.08005 * 120.00342 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.00469 * 179.72467 * 26 25 24 47 47 H 1.07995 * 120.00126 * 359.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 8 4.0541 2.8112 0.0000 6 6 5.3849 2.9870 0.0000 7 8 6.1209 2.0288 0.0009 8 6 5.9609 4.3796 -0.0001 9 7 7.4239 4.3029 0.0004 10 6 8.1580 5.4332 0.0010 11 8 7.6061 6.5165 0.0006 12 7 9.5039 5.3626 0.0010 13 6 10.1267 4.1402 0.0009 14 1 9.7510 3.3428 -0.6231 15 6 11.2403 3.9281 0.8033 16 7 11.5005 4.7489 1.7968 17 14 12.3682 2.4767 0.4708 18 1 12.9296 2.5897 -0.8994 19 1 13.4757 2.4737 1.4602 20 1 11.5965 1.2133 0.5870 21 6 10.3019 6.5913 0.0011 22 6 10.4788 7.0754 -1.4149 23 6 9.5613 7.9503 -1.9660 24 6 9.7239 8.3949 -3.2647 25 6 10.8043 7.9650 -4.0123 26 6 11.7189 7.0860 -3.4631 27 6 11.5588 6.6450 -2.1627 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5140 0.8899 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6767 1.9563 0.8900 34 1 1.6768 1.9562 -0.8900 35 1 3.9337 0.9283 -0.8891 36 1 3.9330 0.9286 0.8908 37 1 5.6251 4.9117 0.8900 38 1 5.6250 4.9118 -0.8900 39 1 7.8642 3.4386 0.0004 40 1 12.2785 4.6010 2.3569 41 1 11.2787 6.3900 0.4410 42 1 9.7909 7.3563 0.5855 43 1 8.7175 8.2866 -1.3818 44 1 9.0073 9.0788 -3.6951 45 1 10.9316 8.3127 -5.0269 46 1 12.5605 6.7466 -4.0486 47 1 12.2760 5.9620 -1.7320 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188267144.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:10 Heat of formation + Delta-G solvation = -109.842455 kcal Electronic energy + Delta-G solvation = -28352.076608 eV Core-core repulsion = 24306.285659 eV Total energy + Delta-G solvation = -4045.790949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.78460 -40.87848 -39.68643 -38.09036 -36.80538 -35.95277 -35.32428 -33.67709 -32.32882 -31.65198 -30.78419 -28.99466 -27.45715 -26.05652 -24.58659 -23.29819 -22.50375 -22.15822 -21.83092 -21.34691 -19.95238 -18.65788 -18.42825 -18.00244 -17.49744 -17.16485 -16.72907 -16.51514 -16.35328 -16.02048 -15.74819 -15.68442 -15.17352 -14.94108 -14.73011 -14.56126 -14.17176 -14.08743 -14.04349 -13.53507 -13.48263 -13.20839 -13.08251 -13.04623 -12.87383 -12.69804 -12.48058 -12.33298 -12.14556 -12.01421 -11.87164 -11.78521 -11.70007 -11.63323 -11.44166 -11.22534 -10.70443 -10.03281 -9.70221 -9.55930 -9.31523 -8.27590 -6.09286 0.53722 0.61893 0.97408 1.28768 1.44241 1.46482 1.54645 2.23318 2.46569 2.49416 3.00431 3.13505 3.46701 3.85068 3.86637 3.91875 4.10630 4.16095 4.17873 4.27232 4.28799 4.32360 4.35368 4.37532 4.42004 4.57085 4.58868 4.78259 4.84528 4.88488 4.89972 4.96178 5.15410 5.19817 5.26154 5.30320 5.31680 5.32508 5.44006 5.44261 5.65027 5.68480 5.70855 5.93380 6.08698 6.25686 6.32070 6.53615 6.64613 7.16877 7.81577 8.16743 8.76454 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.011237 B = 0.002827 C = 0.002441 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2491.108465 B = 9901.160190 C =11466.592513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.058 3.942 5 O -0.350 6.350 6 C 0.471 3.529 7 O -0.528 6.528 8 C 0.152 3.848 9 N -0.740 5.740 10 C 0.676 3.324 11 O -0.656 6.656 12 N -0.467 5.467 13 C -0.350 4.350 14 H 0.079 0.921 15 C 0.011 3.989 16 N -0.891 5.891 17 Si 0.974 3.026 18 H -0.265 1.265 19 H -0.281 1.281 20 H -0.270 1.270 21 C 0.181 3.819 22 C -0.105 4.105 23 C -0.117 4.117 24 C -0.130 4.130 25 C -0.123 4.123 26 C -0.128 4.128 27 C -0.115 4.115 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.115 0.885 39 H 0.408 0.592 40 H 0.271 0.729 41 H 0.089 0.911 42 H 0.040 0.960 43 H 0.108 0.892 44 H 0.142 0.858 45 H 0.153 0.847 46 H 0.144 0.856 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.460 -4.159 -7.311 15.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.015 4.015 5 O -0.266 6.266 6 C 0.315 3.685 7 O -0.418 6.418 8 C 0.026 3.974 9 N -0.401 5.401 10 C 0.379 3.621 11 O -0.542 6.542 12 N -0.189 5.189 13 C -0.478 4.478 14 H 0.097 0.903 15 C -0.192 4.192 16 N -0.528 5.528 17 Si 0.798 3.202 18 H -0.190 1.190 19 H -0.206 1.206 20 H -0.195 1.195 21 C 0.057 3.943 22 C -0.106 4.106 23 C -0.136 4.136 24 C -0.148 4.148 25 C -0.141 4.141 26 C -0.146 4.146 27 C -0.133 4.133 28 H 0.077 0.923 29 H 0.082 0.918 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.132 0.868 39 H 0.246 0.754 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.159 0.841 45 H 0.171 0.829 46 H 0.162 0.838 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.521 -3.715 -7.121 14.875 hybrid contribution 0.943 -1.258 0.492 1.647 sum -11.578 -4.973 -6.629 14.238 Atomic orbital electron populations 1.21744 0.94288 1.02399 1.02341 1.21447 0.97067 0.94571 1.02818 1.21624 0.90143 0.98953 1.04302 1.23420 0.96545 0.78759 1.02807 1.86459 1.22561 1.34004 1.83552 1.23560 0.81297 0.92080 0.71597 1.90673 1.61035 1.43585 1.46461 1.20390 0.80633 0.90050 1.06290 1.44716 1.04619 1.09099 1.81644 1.16160 0.82854 0.83270 0.79832 1.90687 1.72168 1.27929 1.63422 1.42577 1.01235 1.05858 1.69246 1.19323 1.13936 0.90156 1.24360 0.90299 1.26098 1.00006 1.00265 0.92860 1.70043 1.27820 1.39632 1.15290 0.85295 0.77939 0.78632 0.78379 1.18993 1.20649 1.19497 1.19961 0.97246 0.85467 0.91635 1.20540 0.95569 0.96965 0.97555 1.21231 0.98129 0.97675 0.96546 1.21391 0.98985 1.00783 0.93595 1.21435 0.94267 0.97675 1.00766 1.21396 1.00472 0.98194 0.94531 1.21128 0.97569 0.99303 0.95336 0.92260 0.91813 0.92348 0.91354 0.91473 0.90327 0.90184 0.91091 0.91275 0.87181 0.86756 0.75401 0.91945 0.89311 0.94134 0.87375 0.84058 0.82935 0.83827 0.87366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.28 16 3 C -0.11 -1.67 5.59 30.59 0.17 -1.50 16 4 C 0.06 1.21 5.47 71.98 0.39 1.60 16 5 O -0.35 -9.06 10.22 -51.47 -0.53 -9.58 16 6 C 0.47 14.85 8.03 71.24 0.57 15.42 16 7 O -0.53 -19.69 15.42 21.96 0.34 -19.35 16 8 C 0.15 5.13 6.27 85.63 0.54 5.66 16 9 N -0.74 -32.14 5.42 -482.31 -2.61 -34.75 16 10 C 0.68 34.05 8.20 179.05 1.47 35.52 16 11 O -0.66 -34.31 14.86 -3.97 -0.06 -34.37 16 12 N -0.47 -24.25 2.49 -656.49 -1.63 -25.88 16 13 C -0.35 -18.18 8.39 84.01 0.71 -17.48 16 14 H 0.08 4.04 7.12 -2.91 -0.02 4.02 16 15 C 0.01 0.58 4.98 84.90 0.42 1.01 16 16 N -0.89 -47.93 11.59 21.65 0.25 -47.67 16 17 Si 0.97 40.49 29.59 68.60 2.03 42.52 16 18 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 19 H -0.28 -11.50 7.11 99.48 0.71 -10.79 16 20 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 21 C 0.18 9.06 5.02 85.63 0.43 9.49 16 22 C -0.10 -4.59 5.43 -19.87 -0.11 -4.70 16 23 C -0.12 -4.71 9.40 22.27 0.21 -4.50 16 24 C -0.13 -4.14 10.05 22.27 0.22 -3.91 16 25 C -0.12 -3.50 10.05 22.27 0.22 -3.27 16 26 C -0.13 -4.02 10.05 22.27 0.22 -3.80 16 27 C -0.11 -4.52 9.70 22.27 0.22 -4.30 16 28 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 29 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.11 16 35 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 36 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 37 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 38 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 39 H 0.41 18.41 5.61 -92.71 -0.52 17.89 16 40 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 41 H 0.09 4.69 5.71 -2.39 -0.01 4.68 16 42 H 0.04 2.12 7.51 -2.39 -0.02 2.10 16 43 H 0.11 4.67 7.23 -2.91 -0.02 4.65 16 44 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 45 H 0.15 3.08 8.06 -2.91 -0.02 3.05 16 46 H 0.14 3.56 8.06 -2.91 -0.02 3.53 16 47 H 0.11 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -65.60 396.61 4.82 -60.78 By element: Atomic # 1 Polarization: 44.69 SS G_CDS: 0.45 Total: 45.14 kcal Atomic # 6 Polarization: 16.60 SS G_CDS: 6.58 Total: 23.18 kcal Atomic # 7 Polarization: -104.32 SS G_CDS: -3.99 Total: -108.31 kcal Atomic # 8 Polarization: -63.06 SS G_CDS: -0.25 Total: -63.31 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.52 kcal Total: -65.60 4.82 -60.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188267144.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.058 kcal (2) G-P(sol) polarization free energy of solvation -65.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds