Wall clock time and date at job start Tue Mar 31 2020 18:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99655 * 180.02562 * 14 13 3 17 17 C 1.46508 * 119.99384 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46997 * 35.00131 * 17 16 14 19 19 C 1.53000 * 109.46771 * 154.99768 * 17 16 14 20 20 C 1.50696 * 109.47303 * 294.99765 * 19 17 16 21 21 C 1.38229 * 120.00044 * 269.72971 * 20 19 17 22 22 C 1.38236 * 120.00104 * 179.76671 * 21 20 19 23 23 C 1.38235 * 120.00063 * 0.50404 * 22 21 20 24 24 C 1.38235 * 119.99509 * 359.74889 * 23 22 21 25 25 C 1.38235 * 120.00568 * 359.97438 * 24 23 22 26 26 C 1.50696 * 109.46874 * 274.99744 * 17 16 14 27 27 O 1.20827 * 120.00283 * 359.97438 * 26 17 16 28 28 O 1.34226 * 119.99991 * 180.02562 * 26 17 16 29 29 C 1.45195 * 117.00247 * 180.02562 * 28 26 17 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 37 37 H 0.96996 * 120.00288 * 359.97438 * 16 14 13 38 38 H 1.09005 * 109.47289 * 54.99745 * 19 17 16 39 39 H 1.08994 * 109.46980 * 174.99460 * 19 17 16 40 40 H 1.08004 * 119.99799 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.99988 * 180.22575 * 22 21 20 42 42 H 1.08000 * 120.00168 * 179.72519 * 23 22 21 43 43 H 1.08006 * 119.99959 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00185 * 179.97438 * 25 24 23 45 45 H 1.09007 * 109.47315 * 299.99600 * 29 28 26 46 46 H 1.09004 * 109.47580 * 59.99201 * 29 28 26 47 47 H 1.09005 * 109.47739 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2446 3.8831 2.6438 18 1 -1.9731 3.2953 2.0855 19 6 -1.6484 3.9282 4.1189 20 6 -1.8117 2.5231 4.6382 21 6 -3.0423 1.8978 4.5649 22 6 -3.1910 0.6071 5.0369 23 6 -2.1116 -0.0547 5.5917 24 6 -0.8822 0.5726 5.6697 25 6 -0.7321 1.8612 5.1925 26 6 -1.2007 5.2847 2.0918 27 8 -0.1697 5.7243 1.6406 28 8 -2.3068 6.0451 2.1024 29 6 -2.1912 7.3845 1.5541 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.2720 2.1231 1.9978 37 1 0.6984 3.2930 3.2644 38 1 -0.8749 4.4398 4.6919 39 1 -2.5913 4.4653 4.2211 40 1 -3.8869 2.4166 4.1358 41 1 -4.1517 0.1173 4.9763 42 1 -2.2288 -1.0615 5.9645 43 1 -0.0389 0.0558 6.1036 44 1 0.2283 2.3513 5.2539 45 1 -1.4452 7.9449 2.1178 46 1 -1.8871 7.3244 0.5091 47 1 -3.1545 7.8899 1.6233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001189854081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:54 Heat of formation + Delta-G solvation = -93.794834 kcal Electronic energy + Delta-G solvation = -29693.954769 eV Core-core repulsion = 25648.859697 eV Total energy + Delta-G solvation = -4045.095072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72886 -39.44603 -39.00702 -36.56781 -35.66686 -34.65217 -32.64947 -32.03324 -30.97684 -30.72489 -29.30230 -27.54020 -26.72246 -24.65831 -22.99433 -22.68668 -21.49643 -21.09800 -20.31737 -19.39897 -18.18627 -17.61551 -17.15491 -16.75048 -16.23680 -16.02708 -15.67285 -15.20461 -15.11438 -14.78274 -14.44580 -13.87979 -13.75841 -13.66376 -13.50241 -13.16518 -12.99957 -12.83211 -12.60175 -12.34822 -12.09342 -12.06334 -11.65807 -11.45924 -11.26302 -11.19757 -11.09010 -10.89936 -10.79903 -10.78512 -10.44354 -10.25946 -10.10133 -9.58414 -9.31263 -9.01037 -8.95439 -8.87055 -8.75131 -8.44146 -7.69169 -6.06612 -4.14987 1.22509 1.33168 2.29895 2.56312 3.27182 3.31960 3.35884 3.40268 3.68454 4.06997 4.37457 4.48249 4.67068 4.67156 4.91048 4.99529 5.01054 5.04198 5.05336 5.12437 5.14101 5.25445 5.38857 5.41458 5.46626 5.53485 5.66267 5.91102 5.94876 6.35901 6.37271 6.43522 6.47267 6.47783 6.56065 6.66937 6.75448 6.91032 7.09655 7.19191 7.43072 7.47396 7.59025 7.71629 7.83195 7.95721 8.08807 8.26473 8.83903 8.97796 9.39784 9.55803 10.98945 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.003850 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.076491 B = 7270.953392 C = 9046.968573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.127 4.127 3 C 0.287 3.713 4 H 0.048 0.952 5 C -0.530 4.530 6 H 0.061 0.939 7 C 0.066 3.934 8 N -0.882 5.882 9 Si 0.900 3.100 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.720 5.720 14 C 0.703 3.297 15 O -0.591 6.591 16 N -0.733 5.733 17 C 0.189 3.811 18 H 0.127 0.873 19 C -0.082 4.082 20 C -0.081 4.081 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.121 4.121 24 C -0.116 4.116 25 C -0.106 4.106 26 C 0.443 3.557 27 O -0.487 6.487 28 O -0.363 6.363 29 C 0.036 3.964 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.019 0.981 33 H 0.029 0.971 34 H 0.098 0.902 35 H 0.263 0.737 36 H 0.384 0.616 37 H 0.395 0.605 38 H 0.083 0.917 39 H 0.101 0.899 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.060 0.940 46 H 0.062 0.938 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.178 5.998 17.205 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.166 4.166 3 C 0.185 3.815 4 H 0.066 0.934 5 C -0.569 4.569 6 H 0.079 0.921 7 C -0.137 4.137 8 N -0.520 5.520 9 Si 0.728 3.272 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.371 5.371 14 C 0.404 3.596 15 O -0.470 6.470 16 N -0.391 5.391 17 C 0.079 3.921 18 H 0.144 0.856 19 C -0.120 4.120 20 C -0.081 4.081 21 C -0.130 4.130 22 C -0.137 4.137 23 C -0.139 4.139 24 C -0.134 4.134 25 C -0.124 4.124 26 C 0.283 3.717 27 O -0.371 6.371 28 O -0.279 6.279 29 C -0.058 4.058 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.038 0.962 33 H 0.048 0.952 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.215 0.785 37 H 0.229 0.771 38 H 0.102 0.898 39 H 0.120 0.880 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.137 0.863 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.079 0.921 46 H 0.081 0.919 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.519 6.009 15.935 21.744 hybrid contribution 1.729 0.178 0.332 1.769 sum -11.791 6.187 16.267 21.022 Atomic orbital electron populations 1.21802 0.98320 0.97699 1.01307 1.21934 0.92682 0.99920 1.02050 1.18667 0.93864 0.88785 0.80154 0.93426 1.21280 0.90796 1.38610 1.06208 0.92117 1.24874 0.98504 0.94915 0.95405 1.69916 1.34923 1.37858 1.09320 0.86412 0.85018 0.77670 0.78088 1.19794 1.20923 1.20938 1.45707 1.13245 1.59089 1.19041 1.15988 0.83465 0.78129 0.82037 1.90881 1.52276 1.65573 1.38241 1.44923 1.16471 1.61089 1.16601 1.20089 0.88148 0.87269 0.96600 0.85562 1.20831 1.03988 0.94748 0.92389 1.19591 0.93947 0.95418 0.99109 1.21049 0.96971 0.95276 0.99698 1.21122 0.98907 0.94882 0.98775 1.21160 0.93241 0.99790 0.99734 1.21140 0.97471 0.95030 0.99770 1.21008 0.98001 0.95084 0.98350 1.24658 0.81613 0.88819 0.76652 1.90701 1.32180 1.72770 1.41488 1.86481 1.38781 1.27231 1.75433 1.23223 1.03165 0.80148 0.99304 0.93290 0.94140 0.96177 0.95190 0.88421 0.92701 0.78477 0.77105 0.89840 0.88047 0.85859 0.86147 0.86277 0.86057 0.86244 0.92130 0.91889 0.88277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.10 8.51 37.16 0.32 -2.78 16 2 C -0.13 -3.16 5.45 -26.74 -0.15 -3.31 16 3 C 0.29 7.45 2.24 -69.08 -0.15 7.30 16 4 H 0.05 1.45 7.58 -51.93 -0.39 1.06 16 5 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16 6 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 7 C 0.07 1.80 5.29 -17.82 -0.09 1.71 16 8 N -0.88 -25.18 11.30 55.43 0.63 -24.56 16 9 Si 0.90 21.02 29.54 -169.99 -5.02 16.00 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 N -0.72 -15.49 5.03 -59.81 -0.30 -15.79 16 14 C 0.70 14.56 6.96 -86.91 -0.61 13.95 16 15 O -0.59 -14.43 13.14 5.29 0.07 -14.36 16 16 N -0.73 -11.24 4.06 -59.81 -0.24 -11.49 16 17 C 0.19 2.52 2.47 -69.08 -0.17 2.35 16 18 H 0.13 1.86 7.58 -51.93 -0.39 1.47 16 19 C -0.08 -0.75 4.86 -27.88 -0.14 -0.89 16 20 C -0.08 -0.81 4.95 -104.63 -0.52 -1.33 16 21 C -0.11 -1.10 9.70 -39.59 -0.38 -1.49 16 22 C -0.12 -1.16 10.05 -39.58 -0.40 -1.55 16 23 C -0.12 -1.20 10.05 -39.58 -0.40 -1.59 16 24 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 25 C -0.11 -1.08 9.10 -39.58 -0.36 -1.44 16 26 C 0.44 6.68 7.29 36.00 0.26 6.94 16 27 O -0.49 -9.18 16.07 -18.75 -0.30 -9.48 16 28 O -0.36 -4.53 10.37 -39.25 -0.41 -4.93 16 29 C 0.04 0.36 10.56 101.05 1.07 1.42 16 30 H 0.05 1.21 7.84 -51.93 -0.41 0.80 16 31 H 0.04 0.91 5.64 -51.93 -0.29 0.62 16 32 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.68 5.95 -51.93 -0.31 2.38 16 35 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 36 H 0.38 7.19 8.55 -40.82 -0.35 6.84 16 37 H 0.39 4.96 7.84 -40.82 -0.32 4.64 16 38 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 39 H 0.10 0.76 7.94 -51.93 -0.41 0.35 16 40 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 43 H 0.12 1.04 8.06 -52.48 -0.42 0.61 16 44 H 0.12 1.02 7.57 -52.49 -0.40 0.62 16 45 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 46 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 47 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -34.59 390.62 -9.15 -43.74 By element: Atomic # 1 Polarization: 18.94 SS G_CDS: -7.04 Total: 11.90 kcal Atomic # 6 Polarization: 5.50 SS G_CDS: -2.42 Total: 3.08 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: 0.08 Total: -51.83 kcal Atomic # 8 Polarization: -28.14 SS G_CDS: -0.64 Total: -28.77 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.59 -9.15 -43.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189854081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.055 kcal (2) G-P(sol) polarization free energy of solvation -34.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds