Wall clock time and date at job start Tue Mar 31 2020 18:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.50700 * 109.47798 * 185.00026 * 3 2 1 6 6 H 1.07998 * 120.00370 * 240.00769 * 5 3 2 7 7 C 1.37878 * 119.99824 * 59.99855 * 5 3 2 8 8 N 1.31523 * 120.00027 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 119.99983 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47138 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.47111 * 119.99988 * 9 7 5 12 12 H 1.48503 * 109.46778 * 239.99962 * 9 7 5 13 13 N 1.46502 * 109.47005 * 64.99872 * 3 2 1 14 14 C 1.34776 * 120.00080 * 275.00208 * 13 3 2 15 15 O 1.21586 * 119.99932 * 359.97438 * 14 13 3 16 16 N 1.34782 * 119.99655 * 180.02562 * 14 13 3 17 17 C 1.46508 * 119.99384 * 180.02562 * 16 14 13 18 18 H 1.08998 * 109.46997 * 35.00131 * 17 16 14 19 19 C 1.53000 * 109.46771 * 154.99768 * 17 16 14 20 20 C 1.50696 * 109.47303 * 294.99765 * 19 17 16 21 21 C 1.38229 * 120.00044 * 269.72971 * 20 19 17 22 22 C 1.38236 * 120.00104 * 179.76671 * 21 20 19 23 23 C 1.38235 * 120.00063 * 0.50404 * 22 21 20 24 24 C 1.38235 * 119.99509 * 359.74889 * 23 22 21 25 25 C 1.38235 * 120.00568 * 359.97438 * 24 23 22 26 26 C 1.50696 * 109.46874 * 274.99744 * 17 16 14 27 27 O 1.20827 * 120.00283 * 359.97438 * 26 17 16 28 28 O 1.34226 * 119.99991 * 180.02562 * 26 17 16 29 29 C 1.45195 * 117.00247 * 180.02562 * 28 26 17 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 34 34 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 35 35 H 0.96993 * 119.99651 * 179.97438 * 8 7 5 36 36 H 0.97001 * 119.99703 * 95.00546 * 13 3 2 37 37 H 0.96996 * 120.00288 * 359.97438 * 16 14 13 38 38 H 1.09005 * 109.47289 * 54.99745 * 19 17 16 39 39 H 1.08994 * 109.46980 * 174.99460 * 19 17 16 40 40 H 1.08004 * 119.99799 * 359.97438 * 21 20 19 41 41 H 1.07998 * 119.99988 * 180.22575 * 22 21 20 42 42 H 1.08000 * 120.00168 * 179.72519 * 23 22 21 43 43 H 1.08006 * 119.99959 * 179.97438 * 24 23 22 44 44 H 1.07997 * 120.00185 * 179.97438 * 25 24 23 45 45 H 1.09007 * 109.47315 * 299.99600 * 29 28 26 46 46 H 1.09004 * 109.47580 * 59.99201 * 29 28 26 47 47 H 1.09005 * 109.47739 * 179.97438 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 3.5419 1.4443 -0.1238 6 1 4.1473 1.8887 0.6523 7 6 4.1433 0.8784 -1.2280 8 7 3.4062 0.3374 -2.1734 9 14 6.0050 0.8801 -1.3812 10 1 6.5988 1.5453 -0.1938 11 1 6.4963 -0.5190 -1.4627 12 1 6.3999 1.6157 -2.6093 13 7 1.6525 2.0974 1.2518 14 6 0.4352 2.6643 1.3670 15 8 -0.3411 2.6326 0.4318 16 7 0.0789 3.2674 2.5185 17 6 -1.2446 3.8831 2.6438 18 1 -1.9731 3.2953 2.0855 19 6 -1.6484 3.9282 4.1189 20 6 -1.8117 2.5231 4.6382 21 6 -3.0423 1.8978 4.5649 22 6 -3.1910 0.6071 5.0369 23 6 -2.1116 -0.0547 5.5917 24 6 -0.8822 0.5726 5.6697 25 6 -0.7321 1.8612 5.1925 26 6 -1.2007 5.2847 2.0918 27 8 -0.1697 5.7243 1.6406 28 8 -2.3068 6.0451 2.1024 29 6 -2.1912 7.3845 1.5541 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 0.8900 34 1 1.8934 -0.5138 -0.8899 35 1 3.8292 -0.0604 -2.9503 36 1 2.2720 2.1231 1.9978 37 1 0.6984 3.2930 3.2644 38 1 -0.8749 4.4398 4.6919 39 1 -2.5913 4.4653 4.2211 40 1 -3.8869 2.4166 4.1358 41 1 -4.1517 0.1173 4.9763 42 1 -2.2288 -1.0615 5.9645 43 1 -0.0389 0.0558 6.1036 44 1 0.2283 2.3513 5.2539 45 1 -1.4452 7.9449 2.1178 46 1 -1.8871 7.3244 0.5091 47 1 -3.1545 7.8899 1.6233 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001189854081.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:53 Heat of formation + Delta-G solvation = -115.704458 kcal Electronic energy + Delta-G solvation = -29694.904842 eV Core-core repulsion = 25648.859697 eV Total energy + Delta-G solvation = -4046.045145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.93791 -40.74833 -40.03751 -37.81032 -37.13738 -36.21910 -34.37496 -33.55472 -32.36962 -31.68547 -30.44854 -28.82707 -28.24821 -25.66880 -24.92545 -23.45701 -22.80829 -22.10925 -21.60292 -21.29608 -19.83182 -18.81168 -18.32480 -17.85184 -17.65738 -17.28006 -17.10361 -16.61678 -16.24536 -15.93917 -15.89821 -15.34347 -15.14694 -14.76493 -14.51868 -14.47326 -14.18457 -13.98435 -13.80812 -13.66204 -13.49647 -13.19796 -13.10768 -12.94999 -12.83584 -12.69984 -12.59802 -12.14693 -12.08663 -12.03607 -11.82191 -11.77585 -11.64419 -11.54996 -11.11492 -11.00770 -10.52953 -10.28241 -9.71405 -9.57335 -9.50567 -8.14979 -6.31700 0.47151 0.60429 1.12003 1.42292 1.43934 1.46717 1.57134 2.00072 2.40902 2.48093 2.93098 3.14406 3.49632 3.66958 3.78534 3.92230 4.08257 4.19892 4.24846 4.30784 4.31407 4.37816 4.52214 4.54031 4.60784 4.68729 4.71089 4.78644 4.83232 4.87782 5.08016 5.20315 5.24998 5.25802 5.29122 5.38160 5.48250 5.57699 5.64683 5.65314 5.72258 5.74916 5.78480 5.89516 6.20008 6.20716 6.30295 6.67826 6.77018 7.33214 7.36882 7.81673 8.90893 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.010030 B = 0.003850 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2791.076491 B = 7270.953392 C = 9046.968573 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.118 4.118 3 C 0.298 3.702 4 H -0.008 1.008 5 C -0.546 4.546 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.915 5.915 9 Si 0.970 3.030 10 H -0.262 1.262 11 H -0.276 1.276 12 H -0.285 1.285 13 N -0.719 5.719 14 C 0.703 3.297 15 O -0.632 6.632 16 N -0.715 5.715 17 C 0.188 3.812 18 H 0.114 0.886 19 C -0.067 4.067 20 C -0.091 4.091 21 C -0.122 4.122 22 C -0.131 4.131 23 C -0.133 4.133 24 C -0.132 4.132 25 C -0.118 4.118 26 C 0.446 3.554 27 O -0.532 6.532 28 O -0.355 6.355 29 C 0.028 3.972 30 H 0.022 0.978 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.041 0.959 34 H 0.071 0.929 35 H 0.265 0.735 36 H 0.399 0.601 37 H 0.411 0.589 38 H 0.101 0.899 39 H 0.124 0.876 40 H 0.139 0.861 41 H 0.137 0.863 42 H 0.133 0.867 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.065 0.935 46 H 0.046 0.954 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.269 6.391 19.416 24.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.157 4.157 3 C 0.194 3.806 4 H 0.010 0.990 5 C -0.585 4.585 6 H 0.088 0.912 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.795 3.205 10 H -0.186 1.186 11 H -0.202 1.202 12 H -0.212 1.212 13 N -0.371 5.371 14 C 0.403 3.597 15 O -0.513 6.513 16 N -0.372 5.372 17 C 0.079 3.921 18 H 0.132 0.868 19 C -0.105 4.105 20 C -0.092 4.092 21 C -0.140 4.140 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.149 4.149 25 C -0.136 4.136 26 C 0.288 3.712 27 O -0.420 6.420 28 O -0.270 6.270 29 C -0.065 4.065 30 H 0.041 0.959 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.060 0.940 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.233 0.767 37 H 0.248 0.752 38 H 0.120 0.880 39 H 0.142 0.858 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.151 0.849 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.084 0.916 46 H 0.064 0.936 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.637 6.430 18.231 23.658 hybrid contribution 1.638 0.118 -0.348 1.679 sum -12.000 6.548 17.882 22.509 Atomic orbital electron populations 1.21614 0.96990 0.98750 1.00149 1.21762 0.93733 0.99057 1.01154 1.18216 0.93337 0.88827 0.80222 0.99013 1.21601 0.91425 1.38727 1.06708 0.91243 1.25756 1.03287 0.94400 0.94970 1.70065 1.36941 1.38474 1.09840 0.85324 0.79157 0.77886 0.78108 1.18568 1.20173 1.21162 1.45357 1.14144 1.59345 1.18233 1.16107 0.82696 0.78065 0.82851 1.90855 1.53325 1.66979 1.40166 1.44670 1.17625 1.59747 1.15187 1.20325 0.86464 0.85979 0.99324 0.86814 1.20821 1.05618 0.94955 0.89086 1.19709 0.94163 0.95764 0.99517 1.21348 0.97558 0.95563 0.99533 1.21422 0.99724 0.95108 0.98637 1.21455 0.93327 1.00604 0.99657 1.21404 0.98095 0.95365 1.00081 1.21271 0.98686 0.95318 0.98352 1.24910 0.81443 0.89361 0.75532 1.90688 1.33841 1.73883 1.43606 1.86473 1.37321 1.28250 1.74981 1.23541 1.05727 0.79012 0.98238 0.95915 0.93754 0.93849 0.94040 0.91087 0.92625 0.76718 0.75234 0.88033 0.85759 0.84356 0.84559 0.84888 0.84972 0.84974 0.91591 0.93558 0.84246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.51 8.51 71.98 0.61 -4.90 16 2 C -0.12 -5.97 5.45 30.59 0.17 -5.81 16 3 C 0.30 15.87 2.24 44.24 0.10 15.97 16 4 H -0.01 -0.52 7.58 -2.39 -0.02 -0.53 16 5 C -0.55 -29.78 8.73 25.60 0.22 -29.56 16 6 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.91 -53.42 11.30 21.45 0.24 -53.17 16 9 Si 0.97 43.05 29.54 68.60 2.03 45.07 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.99 16 13 N -0.72 -31.15 5.03 -461.42 -2.32 -33.47 16 14 C 0.70 29.35 6.96 179.05 1.25 30.59 16 15 O -0.63 -31.78 13.14 -3.99 -0.05 -31.83 16 16 N -0.71 -21.37 4.06 -461.40 -1.87 -23.24 16 17 C 0.19 4.82 2.47 44.24 0.11 4.93 16 18 H 0.11 3.30 7.58 -2.39 -0.02 3.28 16 19 C -0.07 -1.07 4.86 29.85 0.14 -0.93 16 20 C -0.09 -1.66 4.95 -19.87 -0.10 -1.75 16 21 C -0.12 -2.18 9.70 22.27 0.22 -1.97 16 22 C -0.13 -2.33 10.05 22.27 0.22 -2.11 16 23 C -0.13 -2.42 10.05 22.27 0.22 -2.19 16 24 C -0.13 -2.46 10.05 22.27 0.22 -2.23 16 25 C -0.12 -2.17 9.10 22.27 0.20 -1.97 16 26 C 0.45 13.12 7.29 71.23 0.52 13.64 16 27 O -0.53 -20.12 16.07 21.96 0.35 -19.77 16 28 O -0.35 -8.30 10.37 -51.37 -0.53 -8.83 16 29 C 0.03 0.52 10.56 113.37 1.20 1.71 16 30 H 0.02 1.14 7.84 -2.39 -0.02 1.12 16 31 H 0.04 2.01 5.64 -2.39 -0.01 2.00 16 32 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 33 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.07 4.01 5.95 -2.39 -0.01 4.00 16 35 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.40 14.68 8.55 -92.71 -0.79 13.89 16 37 H 0.41 9.67 7.84 -92.71 -0.73 8.94 16 38 H 0.10 1.29 8.09 -2.38 -0.02 1.27 16 39 H 0.12 1.47 7.94 -2.39 -0.02 1.45 16 40 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 41 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 42 H 0.13 1.92 8.06 -2.91 -0.02 1.90 16 43 H 0.13 2.06 8.06 -2.91 -0.02 2.03 16 44 H 0.13 1.96 7.57 -2.91 -0.02 1.94 16 45 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 46 H 0.05 1.02 8.13 -2.39 -0.02 1.00 16 47 H 0.14 1.41 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -77.41 390.62 3.08 -74.34 By element: Atomic # 1 Polarization: 36.68 SS G_CDS: -0.53 Total: 36.16 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 5.76 Total: 14.75 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.95 Total: -109.88 kcal Atomic # 8 Polarization: -60.20 SS G_CDS: -0.23 Total: -60.43 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.07 kcal Total: -77.41 3.08 -74.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001189854081.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.366 kcal (2) G-P(sol) polarization free energy of solvation -77.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds