Wall clock time and date at job start Tue Mar 31 2020 17:54:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47013 * 2 1 4 4 H 1.09001 * 109.47564 * 55.00225 * 3 2 1 5 5 C 1.53006 * 109.47103 * 294.99919 * 3 2 1 6 6 C 1.53007 * 109.46905 * 175.00225 * 3 2 1 7 7 H 1.08994 * 109.46946 * 304.99336 * 6 3 2 8 8 N 1.46506 * 109.47004 * 184.99672 * 6 3 2 9 9 C 1.34773 * 119.99668 * 154.99886 * 8 6 3 10 10 O 1.21575 * 120.00601 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99661 * 179.97438 * 9 8 6 12 12 C 1.39244 * 119.99752 * 185.16934 * 11 9 8 13 13 C 1.39485 * 119.82825 * 144.27242 * 12 11 9 14 14 C 1.36375 * 120.16568 * 180.30355 * 13 12 11 15 15 C 1.40868 * 119.82728 * 359.45168 * 14 13 12 16 16 C 1.41158 * 120.16221 * 180.29724 * 15 14 13 17 17 H 1.07997 * 120.00523 * 335.06655 * 16 15 14 18 18 C 1.39895 * 119.99738 * 155.06750 * 16 15 14 19 19 N 1.30881 * 120.00152 * 341.98551 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 161.98782 * 18 16 15 21 21 H 1.48503 * 109.47063 * 94.98279 * 20 18 16 22 22 H 1.48494 * 109.47209 * 214.98041 * 20 18 16 23 23 H 1.48496 * 109.47343 * 334.98231 * 20 18 16 24 24 C 1.40867 * 119.67636 * 0.28026 * 15 14 13 25 25 C 1.36378 * 119.82212 * 359.97438 * 24 15 14 26 26 C 1.50700 * 109.47343 * 64.99948 * 6 3 2 27 27 O 1.20825 * 120.00173 * 119.99760 * 26 6 3 28 28 O 1.34233 * 119.99776 * 300.00128 * 26 6 3 29 29 C 1.45197 * 116.99831 * 179.97438 * 28 26 6 30 30 H 1.08996 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47121 * 299.99743 * 1 2 3 32 32 H 1.09000 * 109.47226 * 60.00122 * 1 2 3 33 33 H 1.08999 * 109.46765 * 239.99488 * 2 1 3 34 34 H 1.09000 * 109.47226 * 119.99877 * 2 1 3 35 35 H 1.09005 * 109.46928 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47116 * 300.00004 * 5 3 2 37 37 H 1.08996 * 109.46708 * 60.00002 * 5 3 2 38 38 H 0.97001 * 120.00072 * 334.99961 * 8 6 3 39 39 H 0.97001 * 120.00292 * 5.17510 * 11 9 8 40 40 H 1.08002 * 119.91706 * 0.03749 * 13 12 11 41 41 H 1.07998 * 120.08846 * 179.72759 * 14 13 12 42 42 H 0.96998 * 120.00117 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.09235 * 180.02562 * 24 15 14 44 44 H 1.08008 * 119.91317 * 179.97438 * 25 24 15 45 45 H 1.08994 * 109.46879 * 179.97438 * 29 28 26 46 46 H 1.08996 * 109.47599 * 299.99847 * 29 28 26 47 47 H 1.09006 * 109.47197 * 60.00391 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.8570 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2190 3.0787 0.8532 10 8 5.8824 2.1641 1.3021 11 7 5.6594 4.3478 0.9631 12 6 6.9214 4.6032 1.4932 13 6 7.6871 5.6533 0.9866 14 6 8.9266 5.9058 1.4964 15 6 9.4282 5.1102 2.5451 16 6 10.7076 5.3692 3.0823 17 1 11.4548 5.8668 2.4820 18 6 11.0077 4.9812 4.3924 19 7 10.0413 4.7092 5.2321 20 14 12.7879 4.8513 4.9435 21 1 13.1959 6.1183 5.6020 22 1 12.9282 3.7271 5.9035 23 1 13.6548 4.6054 3.7632 24 6 8.6467 4.0550 3.0552 25 6 7.4113 3.8114 2.5316 26 6 4.1706 0.8072 -1.0984 27 8 4.9245 1.4405 -1.7987 28 8 3.8724 -0.4638 -1.4108 29 6 4.4919 -1.0120 -2.6041 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3076 36 1 2.0698 1.5875 -2.1492 37 1 0.5489 2.1251 -1.3969 38 1 3.5139 3.5536 -0.1121 39 1 5.0973 5.0831 0.6731 40 1 7.2992 6.2653 0.1857 41 1 9.5201 6.7164 1.1003 42 1 10.2494 4.4405 6.1406 43 1 9.0246 3.4411 3.8594 44 1 6.8110 3.0025 2.9214 45 1 4.1677 -2.0436 -2.7404 46 1 4.1972 -0.4205 -3.4709 47 1 5.5762 -0.9835 -2.4963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190149722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:57 Heat of formation + Delta-G solvation = -97.984083 kcal Electronic energy + Delta-G solvation = -28925.673447 eV Core-core repulsion = 24880.396716 eV Total energy + Delta-G solvation = -4045.276732 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03169 -39.66776 -37.77290 -36.94423 -36.46124 -34.42224 -33.82981 -32.84107 -30.30011 -29.39470 -28.90894 -28.49347 -26.90009 -24.90044 -24.03618 -22.16675 -21.31587 -20.94415 -20.17245 -19.92768 -18.18981 -17.50771 -17.30307 -17.14862 -16.58592 -16.24665 -15.27920 -15.04924 -14.91164 -14.76522 -14.65880 -13.97389 -13.93228 -13.76319 -13.54218 -13.07159 -12.98419 -12.64667 -12.49407 -12.34148 -12.14526 -12.00637 -11.89827 -11.79049 -11.34089 -11.23789 -11.09611 -11.08062 -11.02784 -10.94190 -10.67849 -10.65471 -10.53436 -10.01627 -9.66607 -9.46387 -9.18798 -8.96207 -8.86552 -7.44593 -6.93939 -6.67917 -4.23319 2.20187 2.38910 2.72168 3.03702 3.11081 3.14240 3.16741 3.23812 3.74873 3.98021 4.24984 4.46268 4.50879 4.66209 4.70003 4.74440 4.97104 5.01225 5.05572 5.13832 5.21606 5.29107 5.37943 5.40035 5.57073 5.64641 5.69221 5.77198 5.79660 6.00470 6.11008 6.21935 6.28011 6.38162 6.47891 6.83141 6.88256 7.11031 7.15977 7.34704 7.37912 7.68692 7.73310 7.89173 8.05816 8.12521 8.32883 8.49749 8.69869 8.94867 8.96420 9.13466 10.23849 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002390 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.897462 B =11712.507532 C =11869.804329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.155 4.155 6 C 0.182 3.818 7 H 0.127 0.873 8 N -0.732 5.732 9 C 0.701 3.299 10 O -0.574 6.574 11 N -0.661 5.661 12 C 0.011 3.989 13 C -0.105 4.105 14 C -0.216 4.216 15 C 0.105 3.895 16 C -0.459 4.459 17 H 0.077 0.923 18 C 0.075 3.925 19 N -0.791 5.791 20 Si 0.906 3.094 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.261 1.261 24 C -0.157 4.157 25 C -0.085 4.085 26 C 0.449 3.551 27 O -0.492 6.492 28 O -0.356 6.356 29 C 0.032 3.968 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.391 0.609 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.280 0.720 43 H 0.119 0.881 44 H 0.107 0.893 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.145 -8.093 -10.237 23.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.112 4.112 4 H 0.114 0.886 5 C -0.213 4.213 6 C 0.073 3.927 7 H 0.144 0.856 8 N -0.389 5.389 9 C 0.402 3.598 10 O -0.450 6.450 11 N -0.307 5.307 12 C -0.082 4.082 13 C -0.125 4.125 14 C -0.236 4.236 15 C 0.102 3.898 16 C -0.489 4.489 17 H 0.095 0.905 18 C -0.143 4.143 19 N -0.417 5.417 20 Si 0.731 3.269 21 H -0.196 1.196 22 H -0.201 1.201 23 H -0.185 1.185 24 C -0.176 4.176 25 C -0.105 4.105 26 C 0.289 3.711 27 O -0.377 6.377 28 O -0.273 6.273 29 C -0.061 4.061 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.088 0.912 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.224 0.776 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.091 0.909 43 H 0.137 0.863 44 H 0.125 0.875 45 H 0.118 0.882 46 H 0.078 0.922 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -18.303 -8.820 -9.820 22.566 hybrid contribution 0.480 0.691 -0.283 0.888 sum -17.824 -8.128 -10.103 22.042 Atomic orbital electron populations 1.21797 0.95439 1.01772 1.01799 1.21709 0.95971 0.94605 1.04132 1.21440 0.90897 0.98804 1.00062 0.88637 1.21988 1.02321 1.00473 0.96474 1.20329 0.93701 0.83718 0.94905 0.85567 1.44837 1.23377 1.06862 1.63820 1.15935 0.80642 0.84058 0.79128 1.90913 1.56488 1.44082 1.53535 1.41980 1.17857 1.05132 1.65688 1.16969 0.86110 1.04043 1.01044 1.20014 0.94966 0.98350 0.99198 1.20513 0.95904 1.02717 1.04445 1.17662 0.92689 0.89251 0.90180 1.19522 0.98120 1.33915 0.97344 0.90460 1.25914 0.99159 0.92664 0.96537 1.69856 1.33764 1.32872 1.05186 0.86333 0.82791 0.78617 0.79177 1.19646 1.20051 1.18455 1.20978 0.94701 0.99197 1.02772 1.20559 0.97025 0.98593 0.94366 1.24467 0.79335 0.80236 0.87086 1.90690 1.33069 1.63275 1.50643 1.86552 1.66344 1.29276 1.45089 1.23240 0.98829 0.98773 0.85308 0.92569 0.92731 0.92598 0.89741 0.91162 0.92358 0.92685 0.91176 0.76696 0.77622 0.89274 0.88662 0.90916 0.86327 0.87477 0.88224 0.92191 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.13 -0.91 4.88 -26.73 -0.13 -1.04 16 3 C -0.09 -0.73 2.32 -90.62 -0.21 -0.94 16 4 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 5 C -0.16 -1.12 8.50 37.16 0.32 -0.81 16 6 C 0.18 2.19 2.29 -69.08 -0.16 2.03 16 7 H 0.13 1.65 7.58 -51.93 -0.39 1.26 16 8 N -0.73 -9.80 4.55 -59.81 -0.27 -10.07 16 9 C 0.70 13.17 8.23 -86.92 -0.72 12.45 16 10 O -0.57 -13.27 13.44 5.30 0.07 -13.20 16 11 N -0.66 -12.31 5.31 -14.10 -0.07 -12.39 16 12 C 0.01 0.25 6.30 -83.57 -0.53 -0.27 16 13 C -0.10 -2.40 9.90 -39.79 -0.39 -2.79 16 14 C -0.22 -5.41 9.74 -39.26 -0.38 -5.79 16 15 C 0.10 2.89 5.57 -106.80 -0.59 2.30 16 16 C -0.46 -12.50 9.03 -37.85 -0.34 -12.84 16 17 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 18 C 0.07 1.93 5.13 -17.34 -0.09 1.84 16 19 N -0.79 -20.99 10.99 55.55 0.61 -20.38 16 20 Si 0.91 19.13 29.60 -169.99 -5.03 14.10 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 23 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 24 C -0.16 -4.33 8.64 -39.26 -0.34 -4.66 16 25 C -0.09 -2.21 8.61 -39.79 -0.34 -2.55 16 26 C 0.45 6.25 5.76 36.01 0.21 6.46 16 27 O -0.49 -8.65 16.07 -18.75 -0.30 -8.95 16 28 O -0.36 -4.07 7.79 -39.27 -0.31 -4.37 16 29 C 0.03 0.30 10.56 101.05 1.07 1.37 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.29 6.56 -51.93 -0.34 -0.05 16 33 H 0.08 0.66 5.77 -51.93 -0.30 0.36 16 34 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.06 0.41 6.77 -51.93 -0.35 0.06 16 36 H 0.05 0.47 7.07 -51.93 -0.37 0.10 16 37 H 0.07 0.39 6.56 -51.93 -0.34 0.05 16 38 H 0.40 4.06 7.20 -40.82 -0.29 3.77 16 39 H 0.39 5.65 8.84 -40.82 -0.36 5.29 16 40 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 41 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 42 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 43 H 0.12 3.39 6.19 -52.49 -0.32 3.06 16 44 H 0.11 2.78 6.24 -52.48 -0.33 2.46 16 45 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 47 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 LS Contribution 382.27 15.07 5.76 5.76 Total: -1.00 -34.17 382.27 -8.57 -42.74 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: -6.75 Total: 12.51 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: -2.27 Total: -5.75 kcal Atomic # 7 Polarization: -43.10 SS G_CDS: 0.26 Total: -42.84 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.54 Total: -26.52 kcal Atomic # 14 Polarization: 19.13 SS G_CDS: -5.03 Total: 14.10 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.17 -8.57 -42.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190149722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.240 kcal (2) G-P(sol) polarization free energy of solvation -34.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds