Wall clock time and date at job start Tue Mar 31 2020 17:54:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47013 * 2 1 4 4 H 1.09001 * 109.47564 * 55.00225 * 3 2 1 5 5 C 1.53006 * 109.47103 * 294.99919 * 3 2 1 6 6 C 1.53007 * 109.46905 * 175.00225 * 3 2 1 7 7 H 1.08994 * 109.46946 * 304.99336 * 6 3 2 8 8 N 1.46506 * 109.47004 * 184.99672 * 6 3 2 9 9 C 1.34773 * 119.99668 * 154.99886 * 8 6 3 10 10 O 1.21575 * 120.00601 * 359.97438 * 9 8 6 11 11 N 1.34780 * 119.99661 * 179.97438 * 9 8 6 12 12 C 1.39244 * 119.99752 * 185.16934 * 11 9 8 13 13 C 1.39485 * 119.82825 * 144.27242 * 12 11 9 14 14 C 1.36375 * 120.16568 * 180.30355 * 13 12 11 15 15 C 1.40868 * 119.82728 * 359.45168 * 14 13 12 16 16 C 1.41158 * 120.16221 * 180.29724 * 15 14 13 17 17 H 1.07997 * 120.00523 * 335.06655 * 16 15 14 18 18 C 1.39895 * 119.99738 * 155.06750 * 16 15 14 19 19 N 1.30881 * 120.00152 * 341.98551 * 18 16 15 20 20 Si 1.86803 * 119.99889 * 161.98782 * 18 16 15 21 21 H 1.48503 * 109.47063 * 94.98279 * 20 18 16 22 22 H 1.48494 * 109.47209 * 214.98041 * 20 18 16 23 23 H 1.48496 * 109.47343 * 334.98231 * 20 18 16 24 24 C 1.40867 * 119.67636 * 0.28026 * 15 14 13 25 25 C 1.36378 * 119.82212 * 359.97438 * 24 15 14 26 26 C 1.50700 * 109.47343 * 64.99948 * 6 3 2 27 27 O 1.20825 * 120.00173 * 119.99760 * 26 6 3 28 28 O 1.34233 * 119.99776 * 300.00128 * 26 6 3 29 29 C 1.45197 * 116.99831 * 179.97438 * 28 26 6 30 30 H 1.08996 * 109.47381 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.47121 * 299.99743 * 1 2 3 32 32 H 1.09000 * 109.47226 * 60.00122 * 1 2 3 33 33 H 1.08999 * 109.46765 * 239.99488 * 2 1 3 34 34 H 1.09000 * 109.47226 * 119.99877 * 2 1 3 35 35 H 1.09005 * 109.46928 * 180.02562 * 5 3 2 36 36 H 1.09000 * 109.47116 * 300.00004 * 5 3 2 37 37 H 1.08996 * 109.46708 * 60.00002 * 5 3 2 38 38 H 0.97001 * 120.00072 * 334.99961 * 8 6 3 39 39 H 0.97001 * 120.00292 * 5.17510 * 11 9 8 40 40 H 1.08002 * 119.91706 * 0.03749 * 13 12 11 41 41 H 1.07998 * 120.08846 * 179.72759 * 14 13 12 42 42 H 0.96998 * 120.00117 * 180.02562 * 19 18 16 43 43 H 1.07994 * 120.09235 * 180.02562 * 24 15 14 44 44 H 1.08008 * 119.91317 * 179.97438 * 25 24 15 45 45 H 1.08994 * 109.46879 * 179.97438 * 29 28 26 46 46 H 1.08996 * 109.47599 * 299.99847 * 29 28 26 47 47 H 1.09006 * 109.47197 * 60.00391 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5649 1.4442 0.1257 7 1 3.8570 0.8800 1.0113 8 7 4.0433 2.8238 0.2457 9 6 5.2190 3.0787 0.8532 10 8 5.8824 2.1641 1.3021 11 7 5.6594 4.3478 0.9631 12 6 6.9214 4.6032 1.4932 13 6 7.6871 5.6533 0.9866 14 6 8.9266 5.9058 1.4964 15 6 9.4282 5.1102 2.5451 16 6 10.7076 5.3692 3.0823 17 1 11.4548 5.8668 2.4820 18 6 11.0077 4.9812 4.3924 19 7 10.0413 4.7092 5.2321 20 14 12.7879 4.8513 4.9435 21 1 13.1959 6.1183 5.6020 22 1 12.9282 3.7271 5.9035 23 1 13.6548 4.6054 3.7632 24 6 8.6467 4.0550 3.0552 25 6 7.4113 3.8114 2.5316 26 6 4.1706 0.8072 -1.0984 27 8 4.9245 1.4405 -1.7987 28 8 3.8724 -0.4638 -1.4108 29 6 4.4919 -1.0120 -2.6041 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.9989 3.1541 -1.3076 36 1 2.0698 1.5875 -2.1492 37 1 0.5489 2.1251 -1.3969 38 1 3.5139 3.5536 -0.1121 39 1 5.0973 5.0831 0.6731 40 1 7.2992 6.2653 0.1857 41 1 9.5201 6.7164 1.1003 42 1 10.2494 4.4405 6.1406 43 1 9.0246 3.4411 3.8594 44 1 6.8110 3.0025 2.9214 45 1 4.1677 -2.0436 -2.7404 46 1 4.1972 -0.4205 -3.4709 47 1 5.5762 -0.9835 -2.4963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190149722.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:56 Heat of formation + Delta-G solvation = -119.336377 kcal Electronic energy + Delta-G solvation = -28926.599352 eV Core-core repulsion = 24880.396716 eV Total energy + Delta-G solvation = -4046.202637 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.16945 -41.12537 -39.33312 -38.11117 -37.54385 -36.19547 -35.10096 -34.53352 -31.48364 -31.24510 -30.38244 -29.41064 -27.82290 -26.61924 -24.84118 -23.54038 -23.10733 -22.35661 -21.57997 -20.94270 -19.61867 -19.23234 -18.58537 -18.51513 -17.68205 -17.47598 -17.10087 -16.25513 -16.11578 -15.83860 -15.72819 -15.64285 -15.08279 -14.93309 -14.63361 -14.49451 -14.33821 -13.95487 -13.88724 -13.67257 -13.25228 -13.16564 -12.93122 -12.91374 -12.81822 -12.76593 -12.57738 -12.40786 -12.00104 -11.87417 -11.81347 -11.73386 -11.57034 -11.53051 -11.32380 -11.25355 -10.96579 -10.69535 -10.36283 -9.44068 -8.85540 -8.59180 -6.25653 0.87058 1.10999 1.15519 1.29766 1.37948 1.46672 1.54144 1.88440 2.20438 2.24416 2.76586 3.26803 3.46049 3.70528 3.75889 3.83425 4.01086 4.26921 4.28167 4.32783 4.43559 4.49642 4.52452 4.60713 4.64960 4.74101 4.78676 4.96818 5.02156 5.07116 5.10003 5.14727 5.17890 5.22701 5.29225 5.30427 5.32300 5.44024 5.50620 5.60857 5.65694 5.76651 6.08843 6.11833 6.14413 6.36271 6.66434 6.69395 6.93769 7.02372 7.06438 7.58402 8.34244 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.020435 B = 0.002390 C = 0.002358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.897462 B =11712.507532 C =11869.804329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.082 4.082 4 H 0.114 0.886 5 C -0.154 4.154 6 C 0.177 3.823 7 H 0.115 0.885 8 N -0.709 5.709 9 C 0.699 3.301 10 O -0.621 6.621 11 N -0.653 5.653 12 C 0.023 3.977 13 C -0.100 4.100 14 C -0.225 4.225 15 C 0.073 3.927 16 C -0.495 4.495 17 H 0.080 0.920 18 C 0.031 3.969 19 N -0.825 5.825 20 Si 0.983 3.017 21 H -0.258 1.258 22 H -0.269 1.269 23 H -0.259 1.259 24 C -0.182 4.182 25 C -0.098 4.098 26 C 0.450 3.550 27 O -0.535 6.535 28 O -0.349 6.349 29 C 0.026 3.974 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.040 0.960 37 H 0.092 0.908 38 H 0.417 0.583 39 H 0.415 0.585 40 H 0.132 0.868 41 H 0.110 0.890 42 H 0.287 0.713 43 H 0.096 0.904 44 H 0.098 0.902 45 H 0.137 0.863 46 H 0.064 0.936 47 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.970 -7.739 -11.380 25.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.163 4.163 3 C -0.101 4.101 4 H 0.132 0.868 5 C -0.211 4.211 6 C 0.069 3.931 7 H 0.132 0.868 8 N -0.367 5.367 9 C 0.400 3.600 10 O -0.501 6.501 11 N -0.301 5.301 12 C -0.071 4.071 13 C -0.120 4.120 14 C -0.245 4.245 15 C 0.070 3.930 16 C -0.525 4.525 17 H 0.098 0.902 18 C -0.183 4.183 19 N -0.451 5.451 20 Si 0.803 3.197 21 H -0.183 1.183 22 H -0.193 1.193 23 H -0.183 1.183 24 C -0.202 4.202 25 C -0.119 4.119 26 C 0.292 3.708 27 O -0.423 6.423 28 O -0.265 6.265 29 C -0.068 4.068 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.095 0.905 34 H 0.085 0.915 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.111 0.889 38 H 0.255 0.745 39 H 0.252 0.748 40 H 0.150 0.850 41 H 0.128 0.872 42 H 0.098 0.902 43 H 0.114 0.886 44 H 0.116 0.884 45 H 0.155 0.845 46 H 0.083 0.917 47 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.227 -8.454 -11.003 24.529 hybrid contribution 0.877 0.487 -0.036 1.004 sum -19.350 -7.967 -11.039 23.659 Atomic orbital electron populations 1.21770 0.93877 1.02321 1.02445 1.21701 0.97212 0.93805 1.03611 1.21473 0.87397 0.99857 1.01329 0.86844 1.22005 1.03710 1.00226 0.95202 1.20643 0.96363 0.82431 0.93672 0.86770 1.44587 1.21518 1.08360 1.62238 1.16137 0.81551 0.83377 0.78970 1.90891 1.58299 1.45450 1.55467 1.41746 1.16732 1.06199 1.65404 1.17013 0.87640 1.02896 0.99579 1.20364 0.93967 0.98186 0.99490 1.20795 0.97044 1.02741 1.03895 1.18005 0.93427 0.89947 0.91622 1.19791 0.98481 1.35729 0.98453 0.90227 1.26820 1.03762 0.91658 0.96095 1.69919 1.36070 1.33336 1.05777 0.85189 0.76700 0.79127 0.78668 1.18284 1.19316 1.18304 1.20873 0.95953 0.99979 1.03374 1.20591 0.96639 0.99103 0.95536 1.24795 0.78360 0.80688 0.86962 1.90670 1.35015 1.64367 1.52277 1.86561 1.65999 1.28009 1.45917 1.23522 0.97871 1.00828 0.84547 0.92168 0.92159 0.91830 0.90486 0.91544 0.92002 0.94108 0.88949 0.74476 0.74834 0.85013 0.87154 0.90208 0.88564 0.88422 0.84462 0.91689 0.93596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 71.98 0.70 -0.57 16 2 C -0.13 -1.55 4.88 30.59 0.15 -1.40 16 3 C -0.08 -1.11 2.32 -10.79 -0.03 -1.14 16 4 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 5 C -0.15 -1.82 8.50 71.98 0.61 -1.21 16 6 C 0.18 4.11 2.29 44.25 0.10 4.21 16 7 H 0.11 3.00 7.58 -2.39 -0.02 2.98 16 8 N -0.71 -18.06 4.55 -461.41 -2.10 -20.16 16 9 C 0.70 25.89 8.23 179.05 1.47 27.37 16 10 O -0.62 -29.38 13.44 -3.95 -0.05 -29.43 16 11 N -0.65 -23.42 5.31 -316.79 -1.68 -25.10 16 12 C 0.02 1.05 6.30 38.56 0.24 1.29 16 13 C -0.10 -4.42 9.90 22.14 0.22 -4.20 16 14 C -0.22 -11.26 9.74 22.48 0.22 -11.04 16 15 C 0.07 4.13 5.57 -21.28 -0.12 4.02 16 16 C -0.50 -27.75 9.03 23.39 0.21 -27.53 16 17 H 0.08 4.24 7.91 -2.91 -0.02 4.22 16 18 C 0.03 1.65 5.13 85.24 0.44 2.09 16 19 N -0.83 -45.31 10.99 21.82 0.24 -45.07 16 20 Si 0.98 39.79 29.60 68.60 2.03 41.82 16 21 H -0.26 -9.86 7.11 99.48 0.71 -9.16 16 22 H -0.27 -10.45 7.11 99.48 0.71 -9.75 16 23 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 24 C -0.18 -10.53 8.64 22.48 0.19 -10.34 16 25 C -0.10 -5.26 8.61 22.13 0.19 -5.07 16 26 C 0.45 12.37 5.76 71.24 0.41 12.78 16 27 O -0.53 -18.84 16.07 21.97 0.35 -18.49 16 28 O -0.35 -7.73 7.79 -51.45 -0.40 -8.13 16 29 C 0.03 0.45 10.56 113.37 1.20 1.65 16 30 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.46 6.56 -2.39 -0.02 0.45 16 33 H 0.08 1.08 5.77 -2.39 -0.01 1.06 16 34 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 35 H 0.06 0.68 6.77 -2.38 -0.02 0.67 16 36 H 0.04 0.61 7.07 -2.39 -0.02 0.60 16 37 H 0.09 0.71 6.56 -2.39 -0.02 0.69 16 38 H 0.42 7.48 7.20 -92.71 -0.67 6.81 16 39 H 0.41 10.85 8.84 -92.71 -0.82 10.03 16 40 H 0.13 4.68 8.06 -2.91 -0.02 4.65 16 41 H 0.11 5.07 8.06 -2.91 -0.02 5.05 16 42 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 43 H 0.10 5.88 6.19 -2.91 -0.02 5.86 16 44 H 0.10 5.33 6.24 -2.91 -0.02 5.31 16 45 H 0.14 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 47 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 Total: -1.00 -78.18 382.27 4.13 -74.05 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -0.47 Total: 39.64 kcal Atomic # 6 Polarization: -15.32 SS G_CDS: 6.21 Total: -9.11 kcal Atomic # 7 Polarization: -86.80 SS G_CDS: -3.54 Total: -90.34 kcal Atomic # 8 Polarization: -55.95 SS G_CDS: -0.10 Total: -56.05 kcal Atomic # 14 Polarization: 39.79 SS G_CDS: 2.03 Total: 41.82 kcal Total: -78.18 4.13 -74.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190149722.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.285 kcal (2) G-P(sol) polarization free energy of solvation -78.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds