Wall clock time and date at job start Tue Mar 31 2020 17:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 H 1.09001 * 109.47029 * 54.99496 * 3 2 1 5 5 C 1.53000 * 109.47107 * 294.99998 * 3 2 1 6 6 C 1.52997 * 109.47474 * 174.99932 * 3 2 1 7 7 H 1.09007 * 109.47144 * 304.99774 * 6 3 2 8 8 N 1.46496 * 109.47438 * 185.00135 * 6 3 2 9 9 C 1.34775 * 120.00495 * 154.72371 * 8 6 3 10 10 O 1.21590 * 119.99618 * 0.26907 * 9 8 6 11 11 N 1.34775 * 120.00366 * 180.27718 * 9 8 6 12 12 C 1.39958 * 119.99942 * 174.82011 * 11 9 8 13 13 C 1.39289 * 119.94707 * 146.38432 * 12 11 9 14 14 C 1.38487 * 120.43098 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32027 * 0.02562 * 14 13 12 16 16 C 1.40744 * 119.88463 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21170 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00439 * 151.77292 * 17 16 15 19 19 C 1.39940 * 119.99964 * 331.76372 * 17 16 15 20 20 N 1.30824 * 119.99613 * 348.99930 * 19 17 16 21 21 Si 1.86793 * 119.99882 * 168.99636 * 19 17 16 22 22 H 1.48501 * 109.47385 * 60.00477 * 21 19 17 23 23 H 1.48505 * 109.46995 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47364 * 300.00264 * 21 19 17 25 25 C 1.38233 * 119.94614 * 326.10162 * 12 11 9 26 26 C 1.50694 * 109.47078 * 64.99893 * 6 3 2 27 27 O 1.20832 * 120.00136 * 120.00510 * 26 6 3 28 28 O 1.34233 * 119.99936 * 299.99933 * 26 6 3 29 29 C 1.45206 * 116.99584 * 180.02562 * 28 26 6 30 30 H 1.08999 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47238 * 300.00318 * 1 2 3 32 32 H 1.09000 * 109.46592 * 60.00342 * 1 2 3 33 33 H 1.09002 * 109.47757 * 239.99987 * 2 1 3 34 34 H 1.08997 * 109.47318 * 119.99735 * 2 1 3 35 35 H 1.08999 * 109.47074 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47289 * 299.99651 * 5 3 2 37 37 H 1.08998 * 109.47352 * 59.99727 * 5 3 2 38 38 H 0.97002 * 119.99712 * 335.00046 * 8 6 3 39 39 H 0.96997 * 119.99932 * 354.81696 * 11 9 8 40 40 H 1.07999 * 119.78486 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.84034 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.05910 * 179.97438 * 15 14 13 43 43 H 0.97003 * 119.99523 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.15989 * 0.02562 * 25 12 11 45 45 H 1.09002 * 109.46835 * 299.99872 * 29 28 26 46 46 H 1.09002 * 109.47298 * 60.00392 * 29 28 26 47 47 H 1.09007 * 109.46734 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8801 1.0114 8 7 4.0433 2.8238 0.2458 9 6 5.2163 3.0794 0.8583 10 8 5.8798 2.1646 1.3069 11 7 5.6537 4.3490 0.9737 12 6 6.8158 4.6251 1.7032 13 6 7.6538 5.6654 1.3086 14 6 8.8058 5.9477 2.0234 15 6 9.1358 5.2020 3.1327 16 6 8.2992 4.1471 3.5428 17 6 8.6312 3.3771 4.6814 18 1 7.8509 2.9096 5.2635 19 6 9.9710 3.2207 5.0539 20 7 10.9242 3.5982 4.2412 21 14 10.3983 2.4729 6.7114 22 1 9.8406 1.0990 6.7933 23 1 11.8745 2.4182 6.8640 24 1 9.8198 3.3074 7.7950 25 6 7.1270 3.8688 2.8177 26 6 4.1706 0.8074 -1.0983 27 8 4.9246 1.4407 -1.7985 28 8 3.8725 -0.4636 -1.4106 29 6 4.4930 -1.0121 -2.6033 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9982 3.1543 -1.3072 36 1 2.0699 1.5876 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.5138 3.5536 -0.1119 39 1 5.1632 5.0712 0.5512 40 1 7.4035 6.2556 0.4395 41 1 9.4485 6.7568 1.7091 42 1 10.0355 5.4256 3.6868 43 1 11.8529 3.4901 4.4996 44 1 6.4757 3.0647 3.1269 45 1 4.1991 -0.4207 -3.4705 46 1 5.5772 -0.9838 -2.4947 47 1 4.1681 -2.0436 -2.7403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190161270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:00 Heat of formation + Delta-G solvation = -98.703822 kcal Electronic energy + Delta-G solvation = -29124.071405 eV Core-core repulsion = 25078.763463 eV Total energy + Delta-G solvation = -4045.307942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.03523 -39.69375 -37.73905 -36.89298 -36.45106 -34.38076 -33.83324 -32.90252 -30.26815 -29.74100 -28.71104 -27.90105 -26.68914 -25.21987 -24.15582 -22.34097 -21.29708 -20.77507 -20.16815 -19.95899 -18.22237 -17.72574 -17.49944 -16.85335 -16.52989 -15.73338 -15.33287 -15.02278 -14.76579 -14.71699 -14.59970 -14.38026 -13.89238 -13.83423 -13.53816 -13.06163 -12.98771 -12.82034 -12.48668 -12.32983 -12.15605 -12.08730 -11.89527 -11.65622 -11.26674 -11.23180 -11.07534 -11.05979 -10.93073 -10.66450 -10.63603 -10.54362 -10.43517 -10.13846 -9.71376 -9.57785 -9.22774 -9.05910 -8.85957 -7.34389 -6.80438 -6.59187 -4.27569 2.20420 2.38610 2.77932 2.91815 3.11668 3.13704 3.17278 3.27589 3.76422 4.03196 4.25818 4.43008 4.51780 4.62448 4.74128 4.76193 4.98343 5.02915 5.07097 5.14989 5.23122 5.30086 5.39443 5.41383 5.58448 5.65959 5.70084 5.78633 5.81856 6.01986 6.12815 6.27231 6.29702 6.38867 6.46382 6.75881 6.84226 7.10876 7.16112 7.30704 7.39106 7.72962 7.74865 7.86216 8.06025 8.16728 8.31572 8.45288 8.73736 8.94772 9.03613 9.08326 10.34058 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002801 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.852347 B = 9993.845564 C =10518.192403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.155 4.155 6 C 0.182 3.818 7 H 0.128 0.872 8 N -0.730 5.730 9 C 0.704 3.296 10 O -0.560 6.560 11 N -0.677 5.677 12 C 0.167 3.833 13 C -0.259 4.259 14 C -0.094 4.094 15 C -0.169 4.169 16 C 0.119 3.881 17 C -0.458 4.458 18 H 0.075 0.925 19 C 0.073 3.927 20 N -0.802 5.802 21 Si 0.911 3.089 22 H -0.266 1.266 23 H -0.279 1.279 24 H -0.265 1.265 25 C -0.207 4.207 26 C 0.450 3.550 27 O -0.493 6.493 28 O -0.355 6.355 29 C 0.032 3.968 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.069 0.931 38 H 0.398 0.602 39 H 0.395 0.605 40 H 0.088 0.912 41 H 0.092 0.908 42 H 0.121 0.879 43 H 0.279 0.721 44 H 0.107 0.893 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.152 -5.006 -10.189 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.112 4.112 4 H 0.114 0.886 5 C -0.213 4.213 6 C 0.073 3.927 7 H 0.146 0.854 8 N -0.387 5.387 9 C 0.404 3.596 10 O -0.434 6.434 11 N -0.323 5.323 12 C 0.075 3.925 13 C -0.281 4.281 14 C -0.113 4.113 15 C -0.189 4.189 16 C 0.116 3.884 17 C -0.489 4.489 18 H 0.094 0.906 19 C -0.143 4.143 20 N -0.428 5.428 21 Si 0.736 3.264 22 H -0.191 1.191 23 H -0.204 1.204 24 H -0.189 1.189 25 C -0.229 4.229 26 C 0.290 3.710 27 O -0.378 6.378 28 O -0.272 6.272 29 C -0.061 4.061 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.088 0.912 38 H 0.233 0.767 39 H 0.228 0.772 40 H 0.107 0.893 41 H 0.110 0.890 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -18.030 -5.695 -10.025 21.401 hybrid contribution 0.111 0.306 -0.131 0.351 sum -17.919 -5.389 -10.157 21.291 Atomic orbital electron populations 1.21794 0.95427 1.01781 1.01791 1.21712 0.95979 0.94570 1.04176 1.21437 0.90808 0.98861 1.00077 0.88577 1.21988 1.02347 1.00437 0.96481 1.20360 0.93782 0.83578 0.95011 0.85412 1.44835 1.23092 1.06992 1.63830 1.15900 0.80783 0.83943 0.78939 1.91005 1.55947 1.43629 1.52850 1.42506 1.27819 1.06324 1.55608 1.17225 0.85832 0.97663 0.91759 1.20030 0.98947 1.04776 1.04320 1.20463 0.95379 0.98970 0.96451 1.21401 1.02288 0.96500 0.98726 1.17495 0.89808 0.89879 0.91175 1.19502 0.92326 1.27669 1.09356 0.90639 1.25877 0.96250 0.94195 0.97993 1.69802 1.01069 1.37358 1.34588 0.86323 0.77639 0.80238 0.82187 1.19070 1.20429 1.18941 1.20989 1.02570 1.03092 0.96226 1.24451 0.79296 0.80265 0.87032 1.90685 1.33139 1.63324 1.50695 1.86554 1.66264 1.29211 1.45142 1.23248 0.98838 0.98783 0.85280 0.92557 0.92707 0.92622 0.89744 0.91099 0.92382 0.92679 0.91160 0.76650 0.77194 0.89335 0.89031 0.86091 0.91035 0.87458 0.92201 0.91848 0.88196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.67 37.16 0.36 -0.54 16 2 C -0.13 -0.95 4.88 -26.73 -0.13 -1.08 16 3 C -0.09 -0.76 2.32 -90.62 -0.21 -0.97 16 4 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 5 C -0.16 -1.14 8.50 37.16 0.32 -0.82 16 6 C 0.18 2.25 2.29 -69.09 -0.16 2.09 16 7 H 0.13 1.75 7.57 -51.93 -0.39 1.35 16 8 N -0.73 -9.97 4.54 -59.82 -0.27 -10.24 16 9 C 0.70 13.55 8.14 -86.92 -0.71 12.84 16 10 O -0.56 -13.56 13.72 5.29 0.07 -13.49 16 11 N -0.68 -12.74 5.35 -14.27 -0.08 -12.82 16 12 C 0.17 3.94 6.26 -83.76 -0.52 3.42 16 13 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 14 C -0.09 -2.26 10.02 -39.69 -0.40 -2.65 16 15 C -0.17 -4.57 8.66 -38.84 -0.34 -4.91 16 16 C 0.12 3.37 5.55 -106.85 -0.59 2.78 16 17 C -0.46 -12.88 9.06 -37.74 -0.34 -13.23 16 18 H 0.08 2.05 7.87 -52.49 -0.41 1.64 16 19 C 0.07 1.93 5.25 -17.34 -0.09 1.84 16 20 N -0.80 -21.79 10.81 55.55 0.60 -21.19 16 21 Si 0.91 19.64 29.57 -169.99 -5.03 14.62 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 23 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 C -0.21 -5.53 8.39 -38.69 -0.32 -5.86 16 26 C 0.45 6.39 5.77 36.00 0.21 6.60 16 27 O -0.49 -8.75 16.08 -18.75 -0.30 -9.05 16 28 O -0.36 -4.17 7.79 -39.26 -0.31 -4.48 16 29 C 0.03 0.31 10.56 101.05 1.07 1.37 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.30 6.56 -51.93 -0.34 -0.04 16 33 H 0.08 0.69 5.77 -51.93 -0.30 0.39 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.41 6.77 -51.93 -0.35 0.06 16 36 H 0.05 0.47 7.07 -51.93 -0.37 0.11 16 37 H 0.07 0.40 6.56 -51.93 -0.34 0.06 16 38 H 0.40 4.09 7.20 -40.82 -0.29 3.80 16 39 H 0.39 5.70 8.83 -40.82 -0.36 5.34 16 40 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 41 H 0.09 1.95 8.06 -52.49 -0.42 1.52 16 42 H 0.12 3.34 6.18 -52.48 -0.32 3.02 16 43 H 0.28 6.91 8.30 -40.82 -0.34 6.57 16 44 H 0.11 2.95 6.44 -52.49 -0.34 2.61 16 45 H 0.06 0.54 8.13 -51.93 -0.42 0.11 16 46 H 0.06 0.69 8.13 -51.93 -0.42 0.27 16 47 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 LS Contribution 382.70 15.07 5.77 5.77 Total: -1.00 -35.15 382.70 -8.56 -43.71 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -6.76 Total: 12.60 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.26 Total: -5.43 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: 0.25 Total: -44.26 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.54 Total: -27.01 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.15 -8.56 -43.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190161270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.990 kcal (2) G-P(sol) polarization free energy of solvation -35.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds