Wall clock time and date at job start Tue Mar 31 2020 17:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47200 * 2 1 4 4 H 1.09001 * 109.47029 * 54.99496 * 3 2 1 5 5 C 1.53000 * 109.47107 * 294.99998 * 3 2 1 6 6 C 1.52997 * 109.47474 * 174.99932 * 3 2 1 7 7 H 1.09007 * 109.47144 * 304.99774 * 6 3 2 8 8 N 1.46496 * 109.47438 * 185.00135 * 6 3 2 9 9 C 1.34775 * 120.00495 * 154.72371 * 8 6 3 10 10 O 1.21590 * 119.99618 * 0.26907 * 9 8 6 11 11 N 1.34775 * 120.00366 * 180.27718 * 9 8 6 12 12 C 1.39958 * 119.99942 * 174.82011 * 11 9 8 13 13 C 1.39289 * 119.94707 * 146.38432 * 12 11 9 14 14 C 1.38487 * 120.43098 * 179.97438 * 13 12 11 15 15 C 1.37681 * 120.32027 * 0.02562 * 14 13 12 16 16 C 1.40744 * 119.88463 * 0.02562 * 15 14 13 17 17 C 1.41405 * 120.21170 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00439 * 151.77292 * 17 16 15 19 19 C 1.39940 * 119.99964 * 331.76372 * 17 16 15 20 20 N 1.30824 * 119.99613 * 348.99930 * 19 17 16 21 21 Si 1.86793 * 119.99882 * 168.99636 * 19 17 16 22 22 H 1.48501 * 109.47385 * 60.00477 * 21 19 17 23 23 H 1.48505 * 109.46995 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47364 * 300.00264 * 21 19 17 25 25 C 1.38233 * 119.94614 * 326.10162 * 12 11 9 26 26 C 1.50694 * 109.47078 * 64.99893 * 6 3 2 27 27 O 1.20832 * 120.00136 * 120.00510 * 26 6 3 28 28 O 1.34233 * 119.99936 * 299.99933 * 26 6 3 29 29 C 1.45206 * 116.99584 * 180.02562 * 28 26 6 30 30 H 1.08999 * 109.47057 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.47238 * 300.00318 * 1 2 3 32 32 H 1.09000 * 109.46592 * 60.00342 * 1 2 3 33 33 H 1.09002 * 109.47757 * 239.99987 * 2 1 3 34 34 H 1.08997 * 109.47318 * 119.99735 * 2 1 3 35 35 H 1.08999 * 109.47074 * 179.97438 * 5 3 2 36 36 H 1.09000 * 109.47289 * 299.99651 * 5 3 2 37 37 H 1.08998 * 109.47352 * 59.99727 * 5 3 2 38 38 H 0.97002 * 119.99712 * 335.00046 * 8 6 3 39 39 H 0.96997 * 119.99932 * 354.81696 * 11 9 8 40 40 H 1.07999 * 119.78486 * 359.97438 * 13 12 11 41 41 H 1.08000 * 119.84034 * 180.02562 * 14 13 12 42 42 H 1.08003 * 120.05910 * 179.97438 * 15 14 13 43 43 H 0.97003 * 119.99523 * 179.97438 * 20 19 17 44 44 H 1.07996 * 120.15989 * 0.02562 * 25 12 11 45 45 H 1.09002 * 109.46835 * 299.99872 * 29 28 26 46 46 H 1.09002 * 109.47298 * 60.00392 * 29 28 26 47 47 H 1.09007 * 109.46734 * 180.02562 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 3.8571 0.8801 1.0114 8 7 4.0433 2.8238 0.2458 9 6 5.2163 3.0794 0.8583 10 8 5.8798 2.1646 1.3069 11 7 5.6537 4.3490 0.9737 12 6 6.8158 4.6251 1.7032 13 6 7.6538 5.6654 1.3086 14 6 8.8058 5.9477 2.0234 15 6 9.1358 5.2020 3.1327 16 6 8.2992 4.1471 3.5428 17 6 8.6312 3.3771 4.6814 18 1 7.8509 2.9096 5.2635 19 6 9.9710 3.2207 5.0539 20 7 10.9242 3.5982 4.2412 21 14 10.3983 2.4729 6.7114 22 1 9.8406 1.0990 6.7933 23 1 11.8745 2.4182 6.8640 24 1 9.8198 3.3074 7.7950 25 6 7.1270 3.8688 2.8177 26 6 4.1706 0.8074 -1.0983 27 8 4.9246 1.4407 -1.7985 28 8 3.8725 -0.4636 -1.4106 29 6 4.4930 -1.0121 -2.6033 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 1.8935 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.9982 3.1543 -1.3072 36 1 2.0699 1.5876 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 3.5138 3.5536 -0.1119 39 1 5.1632 5.0712 0.5512 40 1 7.4035 6.2556 0.4395 41 1 9.4485 6.7568 1.7091 42 1 10.0355 5.4256 3.6868 43 1 11.8529 3.4901 4.4996 44 1 6.4757 3.0647 3.1269 45 1 4.1991 -0.4207 -3.4705 46 1 5.5772 -0.9838 -2.4947 47 1 4.1681 -2.0436 -2.7403 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190161270.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:59 Heat of formation + Delta-G solvation = -121.248360 kcal Electronic energy + Delta-G solvation = -29125.049010 eV Core-core repulsion = 25078.763463 eV Total energy + Delta-G solvation = -4046.285547 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.20999 -41.16933 -39.28047 -38.11482 -37.56186 -36.19845 -35.13540 -34.63733 -31.73939 -31.20472 -29.72043 -29.31308 -27.65396 -27.21976 -24.91670 -23.76933 -22.83372 -22.40303 -21.62307 -20.97480 -19.70323 -19.49550 -18.58484 -18.09281 -17.62189 -17.33250 -17.02106 -16.47847 -16.15818 -15.98334 -15.83948 -15.65574 -15.10722 -14.93898 -14.71120 -14.62350 -14.35841 -14.01096 -13.89665 -13.61300 -13.17732 -13.11866 -12.93000 -12.84677 -12.81228 -12.59225 -12.57058 -12.22447 -12.03377 -12.01207 -11.87185 -11.76565 -11.60742 -11.56549 -11.37790 -11.33348 -11.08034 -10.74790 -10.41724 -9.35657 -8.69697 -8.56128 -6.37407 0.92648 1.02047 1.08608 1.24997 1.36392 1.49057 1.51493 1.80362 2.20269 2.23213 2.77572 3.15912 3.43726 3.68400 3.75050 3.81666 3.99764 4.25767 4.27210 4.30913 4.46538 4.50839 4.59775 4.62989 4.63901 4.73246 4.77884 5.00924 5.01760 5.04337 5.11398 5.12612 5.13388 5.16748 5.20579 5.26998 5.31783 5.34201 5.49716 5.60080 5.67671 5.82038 6.03687 6.11122 6.14302 6.37099 6.63667 6.69963 6.95688 6.97546 7.02403 7.49355 8.38612 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.002801 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.852347 B = 9993.845564 C =10518.192403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.126 4.126 3 C -0.082 4.082 4 H 0.113 0.887 5 C -0.154 4.154 6 C 0.176 3.824 7 H 0.112 0.888 8 N -0.706 5.706 9 C 0.701 3.299 10 O -0.614 6.614 11 N -0.665 5.665 12 C 0.174 3.826 13 C -0.250 4.250 14 C -0.092 4.092 15 C -0.195 4.195 16 C 0.088 3.912 17 C -0.502 4.502 18 H 0.067 0.933 19 C 0.031 3.969 20 N -0.833 5.833 21 Si 0.987 3.013 22 H -0.265 1.265 23 H -0.264 1.264 24 H -0.255 1.255 25 C -0.232 4.232 26 C 0.450 3.550 27 O -0.534 6.534 28 O -0.349 6.349 29 C 0.025 3.975 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.062 0.938 36 H 0.041 0.959 37 H 0.093 0.907 38 H 0.418 0.582 39 H 0.419 0.581 40 H 0.130 0.870 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.287 0.713 44 H 0.087 0.913 45 H 0.066 0.934 46 H 0.045 0.955 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.098 -4.579 -11.173 24.309 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.100 4.100 4 H 0.131 0.869 5 C -0.211 4.211 6 C 0.068 3.932 7 H 0.130 0.870 8 N -0.364 5.364 9 C 0.401 3.599 10 O -0.493 6.493 11 N -0.313 5.313 12 C 0.080 3.920 13 C -0.271 4.271 14 C -0.111 4.111 15 C -0.215 4.215 16 C 0.086 3.914 17 C -0.532 4.532 18 H 0.085 0.915 19 C -0.182 4.182 20 N -0.460 5.460 21 Si 0.807 3.193 22 H -0.190 1.190 23 H -0.188 1.188 24 H -0.179 1.179 25 C -0.254 4.254 26 C 0.293 3.707 27 O -0.423 6.423 28 O -0.265 6.265 29 C -0.068 4.068 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.081 0.919 36 H 0.060 0.940 37 H 0.111 0.889 38 H 0.257 0.743 39 H 0.257 0.743 40 H 0.148 0.852 41 H 0.142 0.858 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.085 0.915 46 H 0.064 0.936 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.068 -5.243 -11.065 23.509 hybrid contribution 0.612 0.143 -0.003 0.629 sum -19.456 -5.100 -11.069 22.957 Atomic orbital electron populations 1.21767 0.93772 1.02350 1.02481 1.21707 0.97295 0.93777 1.03590 1.21475 0.87199 0.99922 1.01447 0.86870 1.22004 1.03780 1.00230 0.95091 1.20666 0.96537 0.82319 0.93706 0.86986 1.44581 1.21133 1.08492 1.62211 1.16132 0.81655 0.83286 0.78784 1.90978 1.57949 1.45232 1.55120 1.42256 1.26817 1.07229 1.55031 1.17286 0.87093 0.96833 0.90816 1.20453 0.97729 1.04145 1.04759 1.20836 0.96094 0.98964 0.95191 1.21374 1.02196 0.97485 1.00427 1.17846 0.90889 0.90727 0.91969 1.19747 0.93408 1.29431 1.10577 0.91470 1.26767 0.95398 0.94262 1.01820 1.69861 1.01634 1.38143 1.36365 0.85199 0.78028 0.79105 0.76974 1.19006 1.18789 1.17947 1.20949 1.02595 1.03808 0.98001 1.24748 0.78360 0.80736 0.86894 1.90663 1.34987 1.64385 1.52273 1.86563 1.65938 1.27939 1.46017 1.23537 0.97836 1.00866 0.84540 0.92148 0.92169 0.91726 0.90424 0.91680 0.91923 0.94022 0.88867 0.74306 0.74325 0.85191 0.85828 0.87525 0.90253 0.89459 0.91547 0.93637 0.84436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 71.98 0.70 -0.66 16 2 C -0.13 -1.67 4.88 30.60 0.15 -1.52 16 3 C -0.08 -1.18 2.32 -10.79 -0.03 -1.21 16 4 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 5 C -0.15 -1.86 8.50 71.98 0.61 -1.25 16 6 C 0.18 4.29 2.29 44.24 0.10 4.40 16 7 H 0.11 3.16 7.57 -2.38 -0.02 3.14 16 8 N -0.71 -18.69 4.54 -461.43 -2.10 -20.79 16 9 C 0.70 27.06 8.14 179.06 1.46 28.52 16 10 O -0.61 -30.91 13.72 -4.00 -0.05 -30.97 16 11 N -0.67 -24.38 5.35 -317.32 -1.70 -26.08 16 12 C 0.17 8.15 6.26 38.10 0.24 8.39 16 13 C -0.25 -10.94 9.97 22.58 0.23 -10.72 16 14 C -0.09 -4.36 10.02 22.20 0.22 -4.13 16 15 C -0.19 -10.81 8.66 22.75 0.20 -10.61 16 16 C 0.09 5.23 5.55 -21.31 -0.12 5.11 16 17 C -0.50 -29.72 9.06 23.46 0.21 -29.51 16 18 H 0.07 3.90 7.87 -2.91 -0.02 3.88 16 19 C 0.03 1.67 5.25 85.26 0.45 2.12 16 20 N -0.83 -46.67 10.81 21.83 0.24 -46.43 16 21 Si 0.99 41.20 29.57 68.60 2.03 43.23 16 22 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 24 H -0.26 -10.19 7.11 99.48 0.71 -9.48 16 25 C -0.23 -12.89 8.39 22.85 0.19 -12.70 16 26 C 0.45 12.79 5.77 71.23 0.41 13.20 16 27 O -0.53 -19.09 16.08 21.95 0.35 -18.74 16 28 O -0.35 -8.04 7.79 -51.44 -0.40 -8.44 16 29 C 0.03 0.46 10.56 113.37 1.20 1.66 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.06 0.49 6.56 -2.39 -0.02 0.48 16 33 H 0.08 1.14 5.77 -2.39 -0.01 1.13 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.06 0.70 6.77 -2.39 -0.02 0.68 16 36 H 0.04 0.63 7.07 -2.39 -0.02 0.62 16 37 H 0.09 0.73 6.56 -2.39 -0.02 0.72 16 38 H 0.42 7.69 7.20 -92.71 -0.67 7.02 16 39 H 0.42 11.03 8.83 -92.71 -0.82 10.21 16 40 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 41 H 0.12 4.97 8.06 -2.91 -0.02 4.95 16 42 H 0.11 6.12 6.18 -2.91 -0.02 6.11 16 43 H 0.29 14.50 8.30 -92.71 -0.77 13.73 16 44 H 0.09 5.11 6.44 -2.91 -0.02 5.09 16 45 H 0.07 1.13 8.13 -2.39 -0.02 1.11 16 46 H 0.04 1.00 8.13 -2.39 -0.02 0.98 16 47 H 0.14 1.42 8.14 -2.38 -0.02 1.40 16 Total: -1.00 -81.45 382.70 4.11 -77.34 By element: Atomic # 1 Polarization: 40.26 SS G_CDS: -0.47 Total: 39.79 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: 6.21 Total: -8.91 kcal Atomic # 7 Polarization: -89.74 SS G_CDS: -3.56 Total: -93.30 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -0.10 Total: -58.15 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Total: -81.45 4.11 -77.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190161270.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.905 kcal (2) G-P(sol) polarization free energy of solvation -81.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds