Wall clock time and date at job start Tue Mar 31 2020 17:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47367 * 2 1 4 4 H 1.08995 * 109.47426 * 54.99455 * 3 2 1 5 5 C 1.53007 * 109.46883 * 294.99737 * 3 2 1 6 6 C 1.53002 * 109.47121 * 174.99844 * 3 2 1 7 7 H 1.08994 * 109.46886 * 305.00178 * 6 3 2 8 8 N 1.46492 * 109.47004 * 184.99701 * 6 3 2 9 9 C 1.34780 * 120.00173 * 155.00197 * 8 6 3 10 10 O 1.21584 * 119.99814 * 0.02562 * 9 8 6 11 11 N 1.34770 * 120.00301 * 180.02562 * 9 8 6 12 12 C 1.39129 * 120.00040 * 175.54671 * 11 9 8 13 13 C 1.38647 * 120.28696 * 28.43531 * 12 11 9 14 14 C 1.38218 * 120.03749 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.61186 * 0.02562 * 14 13 12 16 16 C 1.36463 * 120.58289 * 359.97438 * 15 14 13 17 17 C 1.40738 * 119.94027 * 0.02562 * 16 15 14 18 18 C 1.41071 * 120.30122 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00021 * 208.07892 * 18 17 16 20 20 C 1.39946 * 119.99648 * 28.07756 * 18 17 16 21 21 N 1.30864 * 120.00415 * 12.13596 * 20 18 17 22 22 Si 1.86803 * 119.99877 * 192.13226 * 20 18 17 23 23 H 1.48502 * 109.47142 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47290 * 300.00169 * 22 20 18 26 26 C 1.50708 * 109.46765 * 64.99789 * 6 3 2 27 27 O 1.20825 * 119.99641 * 120.00547 * 26 6 3 28 28 O 1.34227 * 119.99953 * 299.99622 * 26 6 3 29 29 C 1.45199 * 116.99628 * 180.02562 * 28 26 6 30 30 H 1.08998 * 109.47182 * 300.00617 * 1 2 3 31 31 H 1.09000 * 109.46865 * 60.00221 * 1 2 3 32 32 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47182 * 239.99383 * 2 1 3 34 34 H 1.09000 * 109.46865 * 119.99779 * 2 1 3 35 35 H 1.08998 * 109.47088 * 60.00019 * 5 3 2 36 36 H 1.08997 * 109.46817 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47065 * 299.99900 * 5 3 2 38 38 H 0.97008 * 120.00449 * 334.99998 * 8 6 3 39 39 H 0.97001 * 119.99922 * 355.54173 * 11 9 8 40 40 H 1.08001 * 119.97951 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.69128 * 180.27506 * 14 13 12 42 42 H 1.08003 * 119.70650 * 179.97438 * 15 14 13 43 43 H 1.07990 * 120.03157 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99994 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47014 * 180.02562 * 29 28 26 46 46 H 1.08998 * 109.47314 * 300.00195 * 29 28 26 47 47 H 1.09003 * 109.47505 * 60.00352 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5649 1.4442 0.1258 7 1 3.8570 0.8799 1.0113 8 7 4.0433 2.8236 0.2458 9 6 5.2191 3.0787 0.8533 10 8 5.8829 2.1638 1.3014 11 7 5.6590 4.3477 0.9642 12 6 6.8256 4.6203 1.6717 13 6 7.8293 3.6677 1.7587 14 6 8.9863 3.9442 2.4625 15 6 9.1571 5.1721 3.0882 16 6 8.1855 6.1278 3.0187 17 6 6.9978 5.8717 2.3085 18 6 5.9886 6.8545 2.2313 19 1 4.9564 6.5603 2.1119 20 6 6.3252 8.2106 2.3095 21 7 7.5769 8.5807 2.2150 22 14 4.9878 9.4926 2.5487 23 1 4.2696 9.2273 3.8212 24 1 5.6008 10.8442 2.5983 25 1 4.0295 9.4255 1.4163 26 6 4.1706 0.8071 -1.0984 27 8 4.9246 1.4403 -1.7985 28 8 3.8724 -0.4639 -1.4106 29 6 4.4928 -1.0125 -2.6033 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 2.0700 1.5874 -2.1492 38 1 3.5140 3.5535 -0.1121 39 1 5.1624 5.0711 0.5506 40 1 7.7070 2.7092 1.2763 41 1 9.7664 3.1998 2.5230 42 1 10.0669 5.3724 3.6346 43 1 8.3278 7.0798 3.5083 44 1 7.8101 9.5207 2.2688 45 1 4.1678 -2.0439 -2.7402 46 1 4.1989 -0.4211 -3.4705 47 1 5.5770 -0.9842 -2.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001190162827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:03 Heat of formation + Delta-G solvation = -97.802227 kcal Electronic energy + Delta-G solvation = -29463.798454 eV Core-core repulsion = 25418.529608 eV Total energy + Delta-G solvation = -4045.268846 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.97388 -39.62092 -37.74694 -36.86495 -36.41427 -33.82162 -33.72818 -33.50152 -30.24926 -29.54304 -28.67928 -28.07597 -26.71809 -25.15390 -24.08489 -22.27443 -21.36985 -20.73287 -20.09728 -19.79886 -18.01375 -17.47205 -17.29768 -17.01255 -16.52205 -16.15856 -15.26109 -14.97696 -14.90743 -14.72423 -14.56178 -14.15501 -13.79263 -13.72998 -13.50694 -13.02006 -12.93475 -12.63291 -12.44439 -12.28846 -12.25298 -12.08924 -11.85211 -11.68429 -11.31658 -11.19340 -11.15735 -11.03173 -10.96750 -10.88149 -10.62388 -10.52342 -10.46400 -10.15449 -9.69640 -9.35499 -9.22408 -9.05882 -8.83489 -7.31571 -6.91611 -6.61285 -4.35776 2.24757 2.43519 2.77319 3.01171 3.04636 3.06370 3.13962 3.25565 3.88268 3.90737 4.32917 4.55174 4.59271 4.67057 4.79706 4.84104 4.99371 5.07423 5.07747 5.21651 5.28014 5.36938 5.40602 5.47281 5.65116 5.70866 5.72963 5.77200 5.84910 6.07359 6.16481 6.33197 6.38518 6.48167 6.56829 6.71150 6.92396 7.10263 7.13697 7.34367 7.42850 7.71170 7.77795 7.86358 8.08897 8.17812 8.21716 8.61463 8.61803 8.88480 8.93100 9.22038 10.21254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.003289 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.067659 B = 8511.732941 C = 9898.084628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.126 4.126 3 C -0.094 4.094 4 H 0.096 0.904 5 C -0.156 4.156 6 C 0.183 3.817 7 H 0.126 0.874 8 N -0.731 5.731 9 C 0.701 3.299 10 O -0.583 6.583 11 N -0.647 5.647 12 C 0.036 3.964 13 C -0.097 4.097 14 C -0.221 4.221 15 C -0.118 4.118 16 C -0.146 4.146 17 C 0.099 3.901 18 C -0.470 4.470 19 H 0.073 0.927 20 C 0.076 3.924 21 N -0.799 5.799 22 Si 0.909 3.091 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.267 1.267 26 C 0.449 3.551 27 O -0.492 6.492 28 O -0.356 6.356 29 C 0.032 3.968 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.059 0.941 37 H 0.054 0.946 38 H 0.400 0.600 39 H 0.401 0.599 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.122 0.878 44 H 0.280 0.720 45 H 0.099 0.901 46 H 0.059 0.941 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.915 -12.368 -6.741 19.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.163 4.163 3 C -0.113 4.113 4 H 0.114 0.886 5 C -0.213 4.213 6 C 0.074 3.926 7 H 0.144 0.856 8 N -0.388 5.388 9 C 0.402 3.598 10 O -0.461 6.461 11 N -0.291 5.291 12 C -0.058 4.058 13 C -0.118 4.118 14 C -0.241 4.241 15 C -0.137 4.137 16 C -0.166 4.166 17 C 0.095 3.905 18 C -0.500 4.500 19 H 0.092 0.908 20 C -0.141 4.141 21 N -0.425 5.425 22 Si 0.734 3.266 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.192 1.192 26 C 0.289 3.711 27 O -0.377 6.377 28 O -0.273 6.273 29 C -0.062 4.062 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.235 0.765 39 H 0.236 0.764 40 H 0.138 0.862 41 H 0.107 0.893 42 H 0.105 0.895 43 H 0.140 0.860 44 H 0.091 0.909 45 H 0.117 0.883 46 H 0.078 0.922 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.924 -12.784 -6.583 19.334 hybrid contribution -0.734 1.411 -0.567 1.688 sum -13.657 -11.373 -7.150 19.157 Atomic orbital electron populations 1.21796 0.95471 1.01698 1.01854 1.21702 0.95956 0.94648 1.04027 1.21441 0.90935 0.98728 1.00155 0.88562 1.21991 1.02314 1.00611 0.96391 1.20328 0.93725 0.83785 0.94735 0.85604 1.44860 1.23082 1.06823 1.64043 1.15956 0.80700 0.84141 0.79011 1.90828 1.56496 1.44294 1.54528 1.41927 1.26402 1.06085 1.54657 1.17592 0.86814 0.98223 1.03193 1.20914 0.92175 0.98807 0.99857 1.20344 0.98400 0.97600 1.07792 1.20477 0.98233 0.94314 1.00721 1.20904 0.94669 0.99087 1.01963 1.17365 0.93816 0.90241 0.89113 1.19239 0.94496 0.90264 1.46008 0.90848 1.25838 0.96099 0.99735 0.92390 1.69804 1.18209 1.18541 1.35898 0.86363 0.81245 0.79127 0.79886 1.18978 1.20391 1.19171 1.24538 0.79324 0.80166 0.87112 1.90687 1.33166 1.63237 1.50643 1.86558 1.66328 1.29332 1.45058 1.23231 0.98725 0.98761 0.85439 0.92704 0.92592 0.92623 0.89795 0.91218 0.91196 0.92221 0.92737 0.76511 0.76385 0.86168 0.89302 0.89468 0.86027 0.90891 0.88278 0.92196 0.91952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.67 37.16 0.36 -0.61 16 2 C -0.13 -0.98 4.88 -26.73 -0.13 -1.11 16 3 C -0.09 -0.83 2.32 -90.62 -0.21 -1.04 16 4 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 5 C -0.16 -1.30 8.50 37.16 0.32 -0.99 16 6 C 0.18 2.35 2.29 -69.08 -0.16 2.20 16 7 H 0.13 1.72 7.58 -51.93 -0.39 1.33 16 8 N -0.73 -10.89 4.55 -59.82 -0.27 -11.16 16 9 C 0.70 14.09 8.27 -86.92 -0.72 13.38 16 10 O -0.58 -13.59 13.05 5.29 0.07 -13.52 16 11 N -0.65 -13.81 5.04 -13.83 -0.07 -13.88 16 12 C 0.04 0.90 6.44 -83.17 -0.54 0.37 16 13 C -0.10 -2.47 8.75 -39.44 -0.35 -2.81 16 14 C -0.22 -5.38 10.04 -39.36 -0.40 -5.78 16 15 C -0.12 -2.89 9.96 -39.99 -0.40 -3.29 16 16 C -0.15 -3.84 8.61 -39.28 -0.34 -4.17 16 17 C 0.10 2.60 5.57 -106.65 -0.59 2.00 16 18 C -0.47 -11.83 8.35 -37.87 -0.32 -12.15 16 19 H 0.07 1.73 7.28 -52.49 -0.38 1.34 16 20 C 0.08 1.85 5.23 -17.32 -0.09 1.76 16 21 N -0.80 -20.24 10.87 55.55 0.60 -19.63 16 22 Si 0.91 18.06 29.58 -169.99 -5.03 13.03 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.86 16 24 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 25 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 26 C 0.45 6.43 5.76 36.01 0.21 6.64 16 27 O -0.49 -8.82 16.07 -18.75 -0.30 -9.12 16 28 O -0.36 -4.15 7.79 -39.25 -0.31 -4.46 16 29 C 0.03 0.30 10.56 101.05 1.07 1.37 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.34 6.56 -51.93 -0.34 0.00 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.70 5.77 -51.93 -0.30 0.40 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.47 6.56 -51.93 -0.34 0.13 16 36 H 0.06 0.51 6.77 -51.93 -0.35 0.16 16 37 H 0.05 0.51 7.07 -51.93 -0.37 0.14 16 38 H 0.40 4.92 7.19 -40.82 -0.29 4.63 16 39 H 0.40 7.70 7.74 -40.82 -0.32 7.38 16 40 H 0.12 3.10 5.71 -52.49 -0.30 2.80 16 41 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.09 1.89 8.06 -52.48 -0.42 1.47 16 43 H 0.12 3.25 6.21 -52.49 -0.33 2.92 16 44 H 0.28 6.52 8.30 -40.82 -0.34 6.18 16 45 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 47 H 0.06 0.65 8.13 -51.93 -0.42 0.23 16 LS Contribution 379.31 15.07 5.72 5.72 Total: -1.00 -32.21 379.31 -8.52 -40.73 By element: Atomic # 1 Polarization: 23.19 SS G_CDS: -6.65 Total: 16.54 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -2.28 Total: -4.24 kcal Atomic # 7 Polarization: -44.93 SS G_CDS: 0.26 Total: -44.67 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.54 Total: -27.11 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -32.21 -8.52 -40.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190162827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.069 kcal (2) G-P(sol) polarization free energy of solvation -32.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds