Wall clock time and date at job start Tue Mar 31 2020 17:55:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.47367 * 2 1 4 4 H 1.08995 * 109.47426 * 54.99455 * 3 2 1 5 5 C 1.53007 * 109.46883 * 294.99737 * 3 2 1 6 6 C 1.53002 * 109.47121 * 174.99844 * 3 2 1 7 7 H 1.08994 * 109.46886 * 305.00178 * 6 3 2 8 8 N 1.46492 * 109.47004 * 184.99701 * 6 3 2 9 9 C 1.34780 * 120.00173 * 155.00197 * 8 6 3 10 10 O 1.21584 * 119.99814 * 0.02562 * 9 8 6 11 11 N 1.34770 * 120.00301 * 180.02562 * 9 8 6 12 12 C 1.39129 * 120.00040 * 175.54671 * 11 9 8 13 13 C 1.38647 * 120.28696 * 28.43531 * 12 11 9 14 14 C 1.38218 * 120.03749 * 179.97438 * 13 12 11 15 15 C 1.38867 * 120.61186 * 0.02562 * 14 13 12 16 16 C 1.36463 * 120.58289 * 359.97438 * 15 14 13 17 17 C 1.40738 * 119.94027 * 0.02562 * 16 15 14 18 18 C 1.41071 * 120.30122 * 180.02562 * 17 16 15 19 19 H 1.07996 * 120.00021 * 208.07892 * 18 17 16 20 20 C 1.39946 * 119.99648 * 28.07756 * 18 17 16 21 21 N 1.30864 * 120.00415 * 12.13596 * 20 18 17 22 22 Si 1.86803 * 119.99877 * 192.13226 * 20 18 17 23 23 H 1.48502 * 109.47142 * 60.00287 * 22 20 18 24 24 H 1.48502 * 109.47189 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47290 * 300.00169 * 22 20 18 26 26 C 1.50708 * 109.46765 * 64.99789 * 6 3 2 27 27 O 1.20825 * 119.99641 * 120.00547 * 26 6 3 28 28 O 1.34227 * 119.99953 * 299.99622 * 26 6 3 29 29 C 1.45199 * 116.99628 * 180.02562 * 28 26 6 30 30 H 1.08998 * 109.47182 * 300.00617 * 1 2 3 31 31 H 1.09000 * 109.46865 * 60.00221 * 1 2 3 32 32 H 1.08997 * 109.47474 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47182 * 239.99383 * 2 1 3 34 34 H 1.09000 * 109.46865 * 119.99779 * 2 1 3 35 35 H 1.08998 * 109.47088 * 60.00019 * 5 3 2 36 36 H 1.08997 * 109.46817 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47065 * 299.99900 * 5 3 2 38 38 H 0.97008 * 120.00449 * 334.99998 * 8 6 3 39 39 H 0.97001 * 119.99922 * 355.54173 * 11 9 8 40 40 H 1.08001 * 119.97951 * 359.97438 * 13 12 11 41 41 H 1.07998 * 119.69128 * 180.27506 * 14 13 12 42 42 H 1.08003 * 119.70650 * 179.97438 * 15 14 13 43 43 H 1.07990 * 120.03157 * 180.02562 * 16 15 14 44 44 H 0.96995 * 119.99994 * 179.97438 * 21 20 18 45 45 H 1.09004 * 109.47014 * 180.02562 * 29 28 26 46 46 H 1.08998 * 109.47314 * 300.00195 * 29 28 26 47 47 H 1.09003 * 109.47505 * 60.00352 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1265 -1.3075 6 6 3.5649 1.4442 0.1258 7 1 3.8570 0.8799 1.0113 8 7 4.0433 2.8236 0.2458 9 6 5.2191 3.0787 0.8533 10 8 5.8829 2.1638 1.3014 11 7 5.6590 4.3477 0.9642 12 6 6.8256 4.6203 1.6717 13 6 7.8293 3.6677 1.7587 14 6 8.9863 3.9442 2.4625 15 6 9.1571 5.1721 3.0882 16 6 8.1855 6.1278 3.0187 17 6 6.9978 5.8717 2.3085 18 6 5.9886 6.8545 2.2313 19 1 4.9564 6.5603 2.1119 20 6 6.3252 8.2106 2.3095 21 7 7.5769 8.5807 2.2150 22 14 4.9878 9.4926 2.5487 23 1 4.2696 9.2273 3.8212 24 1 5.6008 10.8442 2.5983 25 1 4.0295 9.4255 1.4163 26 6 4.1706 0.8071 -1.0984 27 8 4.9246 1.4403 -1.7985 28 8 3.8724 -0.4639 -1.4106 29 6 4.4928 -1.0125 -2.6033 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 0.5490 2.1252 -1.3970 36 1 1.9991 3.1540 -1.3076 37 1 2.0700 1.5874 -2.1492 38 1 3.5140 3.5535 -0.1121 39 1 5.1624 5.0711 0.5506 40 1 7.7070 2.7092 1.2763 41 1 9.7664 3.1998 2.5230 42 1 10.0669 5.3724 3.6346 43 1 8.3278 7.0798 3.5083 44 1 7.8101 9.5207 2.2688 45 1 4.1678 -2.0439 -2.7402 46 1 4.1989 -0.4211 -3.4705 47 1 5.5770 -0.9842 -2.4948 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001190162827.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:55:02 Heat of formation + Delta-G solvation = -116.546285 kcal Electronic energy + Delta-G solvation = -29464.611258 eV Core-core repulsion = 25418.529608 eV Total energy + Delta-G solvation = -4046.081649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.16942 -41.14618 -39.29555 -38.06440 -37.53403 -35.51941 -35.50014 -34.85753 -31.52162 -31.18490 -29.87412 -29.35159 -27.70180 -26.99222 -24.88724 -23.75361 -22.94615 -22.20164 -21.53805 -20.92383 -19.56685 -19.08970 -18.57168 -18.45419 -17.67251 -17.49929 -16.90737 -16.43398 -16.12796 -15.84433 -15.75282 -15.64052 -15.05821 -14.80464 -14.64424 -14.43945 -14.36887 -14.14053 -13.90136 -13.54435 -13.16746 -13.14145 -12.91987 -12.87687 -12.80975 -12.69979 -12.57792 -12.13886 -12.02460 -11.99415 -11.85603 -11.73858 -11.56356 -11.53894 -11.31751 -11.15585 -11.03597 -10.67419 -10.38433 -9.29039 -8.78564 -8.46598 -6.28926 0.90241 1.08112 1.11565 1.40751 1.43367 1.53839 1.57424 1.83324 2.23762 2.29816 2.80806 3.29775 3.46585 3.71865 3.76028 3.83546 4.01128 4.28144 4.29490 4.32868 4.50570 4.53552 4.60266 4.64957 4.66034 4.74582 4.77186 4.79094 5.01785 5.05617 5.09801 5.15215 5.22833 5.24186 5.29428 5.31814 5.32564 5.45967 5.50610 5.61263 5.73052 5.81563 6.04032 6.19613 6.22687 6.33916 6.67316 6.69866 6.88491 7.02233 7.11574 7.57561 8.39923 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013311 B = 0.003289 C = 0.002828 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2103.067659 B = 8511.732941 C = 9898.084628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C -0.083 4.083 4 H 0.110 0.890 5 C -0.155 4.155 6 C 0.178 3.822 7 H 0.118 0.882 8 N -0.713 5.713 9 C 0.699 3.301 10 O -0.617 6.617 11 N -0.647 5.647 12 C 0.030 3.970 13 C -0.114 4.114 14 C -0.227 4.227 15 C -0.121 4.121 16 C -0.169 4.169 17 C 0.073 3.927 18 C -0.490 4.490 19 H 0.084 0.916 20 C 0.036 3.964 21 N -0.830 5.830 22 Si 0.984 3.016 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.254 1.254 26 C 0.451 3.549 27 O -0.535 6.535 28 O -0.348 6.348 29 C 0.025 3.975 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.092 0.908 36 H 0.056 0.944 37 H 0.042 0.958 38 H 0.414 0.586 39 H 0.410 0.590 40 H 0.112 0.888 41 H 0.111 0.889 42 H 0.112 0.888 43 H 0.111 0.889 44 H 0.287 0.713 45 H 0.138 0.862 46 H 0.062 0.938 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.458 -12.467 -7.089 21.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.128 0.872 5 C -0.212 4.212 6 C 0.070 3.930 7 H 0.136 0.864 8 N -0.370 5.370 9 C 0.401 3.599 10 O -0.498 6.498 11 N -0.292 5.292 12 C -0.065 4.065 13 C -0.134 4.134 14 C -0.247 4.247 15 C -0.140 4.140 16 C -0.190 4.190 17 C 0.069 3.931 18 C -0.519 4.519 19 H 0.102 0.898 20 C -0.179 4.179 21 N -0.456 5.456 22 Si 0.805 3.195 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.178 1.178 26 C 0.293 3.707 27 O -0.424 6.424 28 O -0.263 6.263 29 C -0.068 4.068 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.061 0.939 38 H 0.252 0.748 39 H 0.246 0.754 40 H 0.130 0.870 41 H 0.129 0.871 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.156 0.844 46 H 0.081 0.919 47 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -15.523 -12.917 -6.962 21.361 hybrid contribution 0.074 1.318 -0.512 1.416 sum -15.449 -11.598 -7.474 20.713 Atomic orbital electron populations 1.21772 0.93953 1.02368 1.02367 1.21690 0.97148 0.93516 1.03741 1.21478 0.87595 1.00023 1.01121 0.87158 1.22005 1.03707 1.00102 0.95391 1.20656 0.96287 0.82197 0.93862 0.86433 1.44681 1.21271 1.08486 1.62549 1.16098 0.81634 0.83199 0.79005 1.90794 1.57915 1.45072 1.56046 1.41826 1.25778 1.06991 1.54602 1.17710 0.87903 0.97853 1.03018 1.21027 0.93006 0.98702 1.00687 1.20621 0.98669 0.98116 1.07265 1.20710 0.98774 0.93917 1.00626 1.20960 0.95747 0.99253 1.02994 1.17704 0.94499 0.91163 0.89742 1.19526 0.94766 0.90935 1.46703 0.89787 1.26730 0.98376 1.01473 0.91304 1.69879 1.20269 1.19437 1.36010 0.85214 0.78160 0.76081 0.80027 1.18751 1.19921 1.17821 1.24756 0.78336 0.80699 0.86880 1.90673 1.35107 1.64364 1.52230 1.86561 1.65973 1.27863 1.45944 1.23531 0.97944 1.00795 0.84515 0.92269 0.91971 0.91958 0.90335 0.91307 0.88946 0.92454 0.93904 0.74832 0.75380 0.86975 0.87052 0.87003 0.87143 0.90273 0.84375 0.91898 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.67 71.98 0.70 -0.78 16 2 C -0.12 -1.67 4.88 30.59 0.15 -1.52 16 3 C -0.08 -1.33 2.32 -10.79 -0.03 -1.35 16 4 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 5 C -0.15 -2.27 8.50 71.98 0.61 -1.66 16 6 C 0.18 4.48 2.29 44.25 0.10 4.58 16 7 H 0.12 3.21 7.58 -2.39 -0.02 3.20 16 8 N -0.71 -21.00 4.55 -461.42 -2.10 -23.10 16 9 C 0.70 28.50 8.27 179.06 1.48 29.98 16 10 O -0.62 -29.47 13.05 -3.98 -0.05 -29.52 16 11 N -0.65 -28.03 5.04 -315.94 -1.59 -29.62 16 12 C 0.03 1.56 6.44 38.88 0.25 1.81 16 13 C -0.11 -5.90 8.75 22.36 0.20 -5.70 16 14 C -0.23 -11.12 10.04 22.42 0.22 -10.89 16 15 C -0.12 -5.98 9.96 22.01 0.22 -5.76 16 16 C -0.17 -9.09 8.61 22.47 0.19 -8.89 16 17 C 0.07 3.92 5.57 -21.18 -0.12 3.80 16 18 C -0.49 -24.77 8.35 23.38 0.20 -24.58 16 19 H 0.08 3.93 7.28 -2.91 -0.02 3.90 16 20 C 0.04 1.71 5.23 85.25 0.45 2.16 16 21 N -0.83 -42.33 10.87 21.83 0.24 -42.09 16 22 Si 0.98 36.22 29.58 68.60 2.03 38.25 16 23 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 25 H -0.25 -8.79 7.11 99.48 0.71 -8.09 16 26 C 0.45 12.86 5.76 71.24 0.41 13.27 16 27 O -0.53 -19.48 16.07 21.97 0.35 -19.12 16 28 O -0.35 -7.81 7.79 -51.39 -0.40 -8.21 16 29 C 0.03 0.45 10.56 113.37 1.20 1.64 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.06 0.55 6.56 -2.39 -0.02 0.54 16 32 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.08 1.16 5.77 -2.39 -0.01 1.15 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 0.96 6.56 -2.39 -0.02 0.94 16 36 H 0.06 0.87 6.77 -2.39 -0.02 0.85 16 37 H 0.04 0.74 7.07 -2.39 -0.02 0.72 16 38 H 0.41 9.80 7.19 -92.70 -0.67 9.13 16 39 H 0.41 15.82 7.74 -92.71 -0.72 15.10 16 40 H 0.11 5.97 5.71 -2.91 -0.02 5.95 16 41 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 42 H 0.11 4.81 8.06 -2.91 -0.02 4.79 16 43 H 0.11 6.07 6.21 -2.92 -0.02 6.06 16 44 H 0.29 13.34 8.30 -92.71 -0.77 12.57 16 45 H 0.14 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 47 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 Total: -1.00 -71.14 379.31 4.34 -66.80 By element: Atomic # 1 Polarization: 50.86 SS G_CDS: -0.37 Total: 50.50 kcal Atomic # 6 Polarization: -10.11 SS G_CDS: 6.23 Total: -3.88 kcal Atomic # 7 Polarization: -91.36 SS G_CDS: -3.45 Total: -94.81 kcal Atomic # 8 Polarization: -56.75 SS G_CDS: -0.10 Total: -56.85 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -71.14 4.34 -66.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001190162827.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.748 kcal (2) G-P(sol) polarization free energy of solvation -71.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.337 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds