Wall clock time and date at job start Tue Mar 31 2020 17:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 H 1.09000 * 109.47145 * 305.00064 * 3 2 1 5 5 C 1.50699 * 109.46949 * 185.00075 * 3 2 1 6 6 H 1.08001 * 119.99496 * 239.99875 * 5 3 2 7 7 C 1.37871 * 120.00214 * 60.00508 * 5 3 2 8 8 N 1.31519 * 120.00268 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00155 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47383 * 89.99357 * 9 7 5 11 11 H 1.48502 * 109.47106 * 209.99827 * 9 7 5 12 12 H 1.48509 * 109.47054 * 329.99557 * 9 7 5 13 13 N 1.46499 * 109.46800 * 65.00308 * 3 2 1 14 14 C 1.34786 * 119.99652 * 275.00083 * 13 3 2 15 15 O 1.21587 * 120.00136 * 359.97438 * 14 13 3 16 16 C 1.47524 * 119.99834 * 180.02562 * 14 13 3 17 17 C 1.39993 * 120.59819 * 0.24852 * 16 14 13 18 18 C 1.38336 * 118.34999 * 180.26268 * 17 16 14 19 19 C 1.38351 * 119.45516 * 359.75327 * 18 17 16 20 20 N 1.31887 * 121.18815 * 359.97213 * 19 18 17 21 21 C 1.32227 * 121.79776 * 0.02680 * 20 19 18 22 22 O 1.35435 * 119.79923 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99755 * 0.02562 * 22 21 20 24 24 C 1.53173 * 109.54186 * 269.81968 * 23 22 21 25 25 C 1.53103 * 109.15716 * 183.24203 * 24 23 22 26 26 O 1.42904 * 109.48507 * 57.47157 * 25 24 23 27 27 C 1.42898 * 114.10375 * 298.89148 * 26 25 24 28 28 C 1.53085 * 109.41455 * 61.15476 * 27 26 25 29 29 H 1.08998 * 109.46957 * 299.99633 * 1 2 3 30 30 H 1.08999 * 109.47265 * 59.99757 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47159 * 240.00288 * 2 1 3 33 33 H 1.08999 * 109.47265 * 120.00243 * 2 1 3 34 34 H 0.96997 * 120.00359 * 180.02562 * 8 7 5 35 35 H 0.96992 * 120.00434 * 94.99939 * 13 3 2 36 36 H 1.08002 * 120.82134 * 359.97438 * 17 16 14 37 37 H 1.07996 * 120.26943 * 179.72843 * 18 17 16 38 38 H 1.08000 * 119.40644 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.53982 * 30.00046 * 23 22 21 40 40 H 1.08998 * 109.52406 * 303.06102 * 24 23 22 41 41 H 1.09002 * 109.52173 * 63.24895 * 24 23 22 42 42 H 1.09007 * 109.40733 * 297.49170 * 25 24 23 43 43 H 1.08994 * 109.49746 * 177.51126 * 25 24 23 44 44 H 1.09008 * 109.47980 * 301.17573 * 27 26 25 45 45 H 1.09001 * 109.49656 * 181.14826 * 27 26 25 46 46 H 1.09000 * 109.52714 * 182.49067 * 28 27 26 47 47 H 1.09002 * 109.57660 * 62.33342 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6326 0.4318 16 6 0.0450 3.3243 2.6274 17 6 0.9313 3.3736 3.7099 18 6 0.5154 3.9993 4.8715 19 6 -0.7493 4.5573 4.9283 20 7 -1.5663 4.5041 3.8943 21 6 -1.2187 3.9184 2.7610 22 8 -2.0901 3.8868 1.7247 23 6 -3.3623 4.5052 1.9279 24 6 -4.3507 3.4741 2.4812 25 6 -5.7300 4.1240 2.6191 26 8 -6.1487 4.6280 1.3491 27 6 -5.2872 5.6306 0.8063 28 6 -3.8907 5.0407 0.5935 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0617 -2.9496 35 1 2.2719 2.1230 1.9978 36 1 1.9137 2.9300 3.6415 37 1 1.1724 4.0514 5.7270 38 1 -1.0731 5.0460 5.8354 39 1 -3.2589 5.3278 2.6356 40 1 -4.4149 2.6277 1.7975 41 1 -4.0095 3.1299 3.4575 42 1 -5.6741 4.9441 3.3351 43 1 -6.4478 3.3830 2.9707 44 1 -5.2254 6.4704 1.4985 45 1 -5.6857 5.9748 -0.1481 46 1 -3.2207 5.8156 0.2211 47 1 -3.9442 4.2270 -0.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192154019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:38 Heat of formation + Delta-G solvation = -88.142246 kcal Electronic energy + Delta-G solvation = -29640.236795 eV Core-core repulsion = 25595.386837 eV Total energy + Delta-G solvation = -4044.849958 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.91014 -39.53667 -38.50705 -37.60991 -34.99786 -33.03182 -32.93132 -32.06537 -31.33113 -30.86407 -30.10604 -27.00011 -25.23776 -24.48960 -23.75944 -23.09697 -22.62702 -20.78165 -20.29726 -19.34588 -18.60104 -17.62470 -17.05466 -16.30217 -16.15377 -15.92870 -15.60100 -15.18599 -15.03187 -14.87091 -14.49546 -14.42215 -13.94438 -13.79607 -13.58931 -13.44013 -12.90847 -12.67688 -12.65085 -12.37110 -12.25117 -11.96106 -11.50052 -11.48710 -11.34726 -11.24190 -10.98904 -10.81965 -10.67264 -10.49044 -10.31211 -10.18040 -10.01289 -9.90171 -9.76015 -9.59729 -9.03634 -8.93700 -8.49445 -8.47111 -7.77586 -6.12010 -4.21615 0.79068 1.22465 2.96034 3.23672 3.30744 3.32452 3.34700 3.65889 3.93450 4.12806 4.24567 4.39611 4.56025 4.59341 4.74051 4.76540 4.86555 4.94678 5.00252 5.02430 5.17856 5.20105 5.25896 5.41415 5.45424 5.45980 5.63326 5.65439 5.80364 5.85565 5.99402 6.04713 6.09591 6.34300 6.42590 6.50046 6.69874 6.95344 7.07464 7.22685 7.32267 7.39427 7.47126 7.62572 7.69900 7.78739 7.91752 8.19163 8.67193 8.78745 9.15445 9.45861 10.93246 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003117 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.830062 B = 8980.855025 C =10093.467301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.127 4.127 3 C 0.273 3.727 4 H 0.050 0.950 5 C -0.534 4.534 6 H 0.060 0.940 7 C 0.067 3.933 8 N -0.881 5.881 9 Si 0.900 3.100 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.274 1.274 13 N -0.705 5.705 14 C 0.546 3.454 15 O -0.521 6.521 16 C -0.195 4.195 17 C -0.013 4.013 18 C -0.222 4.222 19 C 0.153 3.847 20 N -0.550 5.550 21 C 0.367 3.633 22 O -0.255 6.255 23 C 0.085 3.915 24 C -0.172 4.172 25 C 0.068 3.932 26 O -0.383 6.383 27 C 0.068 3.932 28 C -0.155 4.155 29 H 0.038 0.962 30 H 0.050 0.950 31 H 0.021 0.979 32 H 0.099 0.901 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.384 0.616 36 H 0.146 0.854 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.078 0.922 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.052 0.948 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.043 9.214 14.378 20.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.166 4.166 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.573 4.573 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.728 3.272 10 H -0.206 1.206 11 H -0.211 1.211 12 H -0.199 1.199 13 N -0.354 5.354 14 C 0.330 3.670 15 O -0.399 6.399 16 C -0.202 4.202 17 C -0.039 4.039 18 C -0.242 4.242 19 C -0.004 4.004 20 N -0.274 5.274 21 C 0.187 3.813 22 O -0.159 6.159 23 C 0.029 3.971 24 C -0.210 4.210 25 C -0.009 4.009 26 O -0.301 6.301 27 C -0.009 4.009 28 C -0.193 4.193 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.041 0.959 32 H 0.117 0.883 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.217 0.783 36 H 0.163 0.837 37 H 0.158 0.842 38 H 0.177 0.823 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.115 0.885 44 H 0.070 0.930 45 H 0.119 0.881 46 H 0.101 0.899 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -13.561 9.266 13.125 21.024 hybrid contribution 2.464 -0.281 0.637 2.561 sum -11.096 8.986 13.762 19.831 Atomic orbital electron populations 1.21832 0.98274 0.97976 1.01326 1.21938 0.92661 0.99764 1.02221 1.18788 0.94141 0.89148 0.80818 0.93181 1.21219 0.90693 1.39075 1.06303 0.92151 1.24880 0.98552 0.94835 0.95376 1.69896 1.35093 1.37502 1.09344 0.86468 0.84939 0.78402 0.77399 1.20564 1.21075 1.19887 1.46413 1.14249 1.56161 1.18564 1.17695 0.83216 0.79703 0.86345 1.90804 1.50986 1.58932 1.39128 1.20503 0.94076 1.07360 0.98238 1.21744 0.98543 0.92662 0.90934 1.21882 0.98577 1.04174 0.99603 1.22528 0.89484 0.93170 0.95193 1.67349 1.37270 1.22126 1.00661 1.19852 0.87484 0.88221 0.85746 1.86660 1.24182 1.72114 1.32992 1.22356 0.81170 0.95666 0.97954 1.22649 0.95562 0.99911 1.02857 1.22526 0.95053 0.97984 0.85337 1.87936 1.49744 1.56909 1.35528 1.22561 0.88944 0.89951 0.99427 1.22323 0.97059 1.02643 0.97243 0.94290 0.93091 0.95949 0.88273 0.95112 0.92555 0.78283 0.83662 0.84211 0.82322 0.89456 0.90022 0.90358 0.92953 0.88489 0.92990 0.88076 0.89930 0.89436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.51 37.16 0.32 -2.82 16 2 C -0.13 -3.11 5.45 -26.73 -0.15 -3.25 16 3 C 0.27 6.85 2.24 -69.08 -0.15 6.70 16 4 H 0.05 1.47 7.58 -51.93 -0.39 1.07 16 5 C -0.53 -13.98 8.73 -34.44 -0.30 -14.28 16 6 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.69 16 8 N -0.88 -24.60 11.29 55.43 0.63 -23.97 16 9 Si 0.90 20.45 29.54 -169.99 -5.02 15.43 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.10 16 12 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 13 N -0.71 -14.70 4.98 -55.98 -0.28 -14.98 16 14 C 0.55 11.33 6.34 -12.47 -0.08 11.26 16 15 O -0.52 -12.55 12.33 -16.48 -0.20 -12.76 16 16 C -0.20 -3.28 5.90 -104.69 -0.62 -3.89 16 17 C -0.01 -0.16 9.64 -38.89 -0.37 -0.54 16 18 C -0.22 -2.21 10.09 -39.50 -0.40 -2.61 16 19 C 0.15 1.58 11.17 -17.49 -0.20 1.39 16 20 N -0.55 -7.38 8.64 -12.98 -0.11 -7.49 16 21 C 0.37 5.99 7.48 -16.62 -0.12 5.86 16 22 O -0.26 -4.43 7.87 -39.77 -0.31 -4.75 16 23 C 0.09 1.14 2.46 -26.55 -0.07 1.08 16 24 C -0.17 -2.06 5.77 -26.59 -0.15 -2.21 16 25 C 0.07 0.67 6.84 37.21 0.25 0.92 16 26 O -0.38 -4.40 10.77 -35.23 -0.38 -4.78 16 27 C 0.07 0.66 6.84 37.20 0.25 0.92 16 28 C -0.15 -1.87 5.79 -26.59 -0.15 -2.02 16 29 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 30 H 0.05 1.24 7.84 -51.93 -0.41 0.84 16 31 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 2.67 5.95 -51.93 -0.31 2.37 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 35 H 0.38 6.84 6.64 -40.82 -0.27 6.57 16 36 H 0.15 1.57 6.52 -52.49 -0.34 1.23 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 38 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 39 H 0.09 1.11 6.99 -51.93 -0.36 0.74 16 40 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 43 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 45 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 46 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 LS Contribution 376.02 15.07 5.67 5.67 Total: -1.00 -32.16 376.02 -9.04 -41.20 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.99 Total: 8.27 kcal Atomic # 6 Polarization: 0.20 SS G_CDS: -2.03 Total: -1.83 kcal Atomic # 7 Polarization: -46.68 SS G_CDS: 0.24 Total: -46.45 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.90 Total: -22.29 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.16 -9.04 -41.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192154019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.939 kcal (2) G-P(sol) polarization free energy of solvation -32.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds