Wall clock time and date at job start Tue Mar 31 2020 17:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47262 * 2 1 4 4 H 1.09000 * 109.47145 * 305.00064 * 3 2 1 5 5 C 1.50699 * 109.46949 * 185.00075 * 3 2 1 6 6 H 1.08001 * 119.99496 * 239.99875 * 5 3 2 7 7 C 1.37871 * 120.00214 * 60.00508 * 5 3 2 8 8 N 1.31519 * 120.00268 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00155 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47383 * 89.99357 * 9 7 5 11 11 H 1.48502 * 109.47106 * 209.99827 * 9 7 5 12 12 H 1.48509 * 109.47054 * 329.99557 * 9 7 5 13 13 N 1.46499 * 109.46800 * 65.00308 * 3 2 1 14 14 C 1.34786 * 119.99652 * 275.00083 * 13 3 2 15 15 O 1.21587 * 120.00136 * 359.97438 * 14 13 3 16 16 C 1.47524 * 119.99834 * 180.02562 * 14 13 3 17 17 C 1.39993 * 120.59819 * 0.24852 * 16 14 13 18 18 C 1.38336 * 118.34999 * 180.26268 * 17 16 14 19 19 C 1.38351 * 119.45516 * 359.75327 * 18 17 16 20 20 N 1.31887 * 121.18815 * 359.97213 * 19 18 17 21 21 C 1.32227 * 121.79776 * 0.02680 * 20 19 18 22 22 O 1.35435 * 119.79923 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99755 * 0.02562 * 22 21 20 24 24 C 1.53173 * 109.54186 * 269.81968 * 23 22 21 25 25 C 1.53103 * 109.15716 * 183.24203 * 24 23 22 26 26 O 1.42904 * 109.48507 * 57.47157 * 25 24 23 27 27 C 1.42898 * 114.10375 * 298.89148 * 26 25 24 28 28 C 1.53085 * 109.41455 * 61.15476 * 27 26 25 29 29 H 1.08998 * 109.46957 * 299.99633 * 1 2 3 30 30 H 1.08999 * 109.47265 * 59.99757 * 1 2 3 31 31 H 1.08998 * 109.47182 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47159 * 240.00288 * 2 1 3 33 33 H 1.08999 * 109.47265 * 120.00243 * 2 1 3 34 34 H 0.96997 * 120.00359 * 180.02562 * 8 7 5 35 35 H 0.96992 * 120.00434 * 94.99939 * 13 3 2 36 36 H 1.08002 * 120.82134 * 359.97438 * 17 16 14 37 37 H 1.07996 * 120.26943 * 179.72843 * 18 17 16 38 38 H 1.08000 * 119.40644 * 180.02562 * 19 18 17 39 39 H 1.09004 * 109.53982 * 30.00046 * 23 22 21 40 40 H 1.08998 * 109.52406 * 303.06102 * 24 23 22 41 41 H 1.09002 * 109.52173 * 63.24895 * 24 23 22 42 42 H 1.09007 * 109.40733 * 297.49170 * 25 24 23 43 43 H 1.08994 * 109.49746 * 177.51126 * 25 24 23 44 44 H 1.09008 * 109.47980 * 301.17573 * 27 26 25 45 45 H 1.09001 * 109.49656 * 181.14826 * 27 26 25 46 46 H 1.09000 * 109.52714 * 182.49067 * 28 27 26 47 47 H 1.09002 * 109.57660 * 62.33342 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6523 7 6 4.1432 0.8784 -1.2280 8 7 3.4062 0.3367 -2.1730 9 14 6.0049 0.8812 -1.3818 10 1 6.5548 -0.3502 -0.7602 11 1 6.3829 0.9224 -2.8173 12 1 6.5570 2.0738 -0.6902 13 7 1.6525 2.0974 1.2519 14 6 0.4351 2.6643 1.3670 15 8 -0.3413 2.6326 0.4318 16 6 0.0450 3.3243 2.6274 17 6 0.9313 3.3736 3.7099 18 6 0.5154 3.9993 4.8715 19 6 -0.7493 4.5573 4.9283 20 7 -1.5663 4.5041 3.8943 21 6 -1.2187 3.9184 2.7610 22 8 -2.0901 3.8868 1.7247 23 6 -3.3623 4.5052 1.9279 24 6 -4.3507 3.4741 2.4812 25 6 -5.7300 4.1240 2.6191 26 8 -6.1487 4.6280 1.3491 27 6 -5.2872 5.6306 0.8063 28 6 -3.8907 5.0407 0.5935 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8293 -0.0617 -2.9496 35 1 2.2719 2.1230 1.9978 36 1 1.9137 2.9300 3.6415 37 1 1.1724 4.0514 5.7270 38 1 -1.0731 5.0460 5.8354 39 1 -3.2589 5.3278 2.6356 40 1 -4.4149 2.6277 1.7975 41 1 -4.0095 3.1299 3.4575 42 1 -5.6741 4.9441 3.3351 43 1 -6.4478 3.3830 2.9707 44 1 -5.2254 6.4704 1.4985 45 1 -5.6857 5.9748 -0.1481 46 1 -3.2207 5.8156 0.2211 47 1 -3.9442 4.2270 -0.1299 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192154019.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:37 Heat of formation + Delta-G solvation = -110.343225 kcal Electronic energy + Delta-G solvation = -29641.199501 eV Core-core repulsion = 25595.386837 eV Total energy + Delta-G solvation = -4045.812664 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.01129 -40.62442 -39.95169 -38.63006 -36.88453 -34.52874 -33.93762 -33.70480 -32.49728 -32.19014 -31.26947 -28.94612 -26.16333 -25.80177 -24.82241 -24.61866 -23.75872 -22.30333 -21.46144 -21.09196 -19.76495 -19.14271 -18.10742 -17.68905 -17.24492 -17.18449 -16.87306 -16.61836 -16.16121 -16.06228 -15.91839 -15.76415 -15.29091 -14.91502 -14.70603 -14.59411 -14.49251 -14.14156 -13.75931 -13.52994 -13.45323 -13.37619 -13.22624 -13.17585 -12.90198 -12.66551 -12.39446 -12.29747 -12.18320 -12.07716 -11.62030 -11.59099 -11.40998 -11.09636 -10.98825 -10.95833 -10.76301 -10.55319 -10.40895 -9.69670 -9.43258 -8.15708 -6.33608 -0.26560 0.25518 1.44840 1.45793 1.56133 1.94315 2.06113 2.33944 2.57551 2.87262 2.87793 3.13672 3.27697 3.62073 3.64481 3.83610 3.86514 3.88759 3.97654 4.05376 4.18878 4.19632 4.44428 4.45954 4.49214 4.53836 4.55204 4.60395 4.67133 4.74033 4.74533 4.90559 4.95865 5.00719 5.04518 5.10604 5.13848 5.23478 5.42144 5.47876 5.54583 5.61923 5.78036 5.92619 6.15630 6.15784 6.29208 6.73198 6.74802 7.00078 7.33497 7.58788 8.89837 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015282 B = 0.003117 C = 0.002773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.830062 B = 8980.855025 C =10093.467301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.282 3.718 4 H -0.005 1.005 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.972 3.028 10 H -0.270 1.270 11 H -0.288 1.288 12 H -0.263 1.263 13 N -0.701 5.701 14 C 0.543 3.457 15 O -0.567 6.567 16 C -0.234 4.234 17 C -0.010 4.010 18 C -0.203 4.203 19 C 0.162 3.838 20 N -0.554 5.554 21 C 0.349 3.651 22 O -0.292 6.292 23 C 0.080 3.920 24 C -0.165 4.165 25 C 0.071 3.929 26 O -0.400 6.400 27 C 0.072 3.928 28 C -0.155 4.155 29 H 0.038 0.962 30 H 0.023 0.977 31 H 0.044 0.956 32 H 0.073 0.927 33 H 0.042 0.958 34 H 0.265 0.735 35 H 0.401 0.599 36 H 0.162 0.838 37 H 0.186 0.814 38 H 0.208 0.792 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.113 0.887 44 H 0.075 0.925 45 H 0.116 0.884 46 H 0.081 0.919 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.336 10.576 18.309 23.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.178 3.822 4 H 0.013 0.987 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.185 4.185 8 N -0.554 5.554 9 Si 0.797 3.203 10 H -0.196 1.196 11 H -0.214 1.214 12 H -0.188 1.188 13 N -0.351 5.351 14 C 0.331 3.669 15 O -0.448 6.448 16 C -0.240 4.240 17 C -0.036 4.036 18 C -0.223 4.223 19 C 0.006 3.994 20 N -0.278 5.278 21 C 0.171 3.829 22 O -0.198 6.198 23 C 0.024 3.976 24 C -0.203 4.203 25 C -0.006 4.006 26 O -0.319 6.319 27 C -0.004 4.004 28 C -0.192 4.192 29 H 0.057 0.943 30 H 0.042 0.958 31 H 0.063 0.937 32 H 0.092 0.908 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.236 0.764 36 H 0.179 0.821 37 H 0.204 0.796 38 H 0.224 0.776 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.097 0.903 42 H 0.092 0.908 43 H 0.131 0.869 44 H 0.093 0.907 45 H 0.134 0.866 46 H 0.100 0.900 47 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -12.849 10.641 17.102 23.892 hybrid contribution 2.213 -0.634 -0.469 2.349 sum -10.636 10.007 16.633 22.134 Atomic orbital electron populations 1.21648 0.97320 0.98874 0.99972 1.21783 0.93374 0.99278 1.01365 1.18349 0.93757 0.88982 0.81072 0.98673 1.21564 0.91180 1.39007 1.06818 0.90823 1.25797 1.03436 0.94356 0.94956 1.70060 1.37126 1.38296 1.09897 0.85348 0.78941 0.78944 0.77110 1.19552 1.21418 1.18759 1.46118 1.15045 1.56279 1.17688 1.18331 0.82275 0.78845 0.87488 1.90772 1.52157 1.60578 1.41292 1.20224 0.95902 1.10227 0.97642 1.22027 0.98451 0.92499 0.90641 1.22369 0.98829 1.01573 0.99496 1.23474 0.89159 0.91367 0.95417 1.67459 1.37991 1.21953 1.00400 1.19986 0.87316 0.89103 0.86538 1.86621 1.25685 1.72891 1.34558 1.22579 0.80258 0.96119 0.98602 1.22589 0.96846 0.98916 1.01948 1.22643 0.93773 0.98959 0.85214 1.87916 1.50092 1.57465 1.36382 1.22664 0.86992 0.89905 1.00869 1.22355 0.98901 1.01714 0.96279 0.94317 0.95780 0.93691 0.90846 0.93927 0.92619 0.76374 0.82092 0.79649 0.77585 0.88447 0.92701 0.90253 0.90802 0.86883 0.90693 0.86558 0.90019 0.92282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.82 8.51 71.98 0.61 -5.20 16 2 C -0.12 -6.07 5.45 30.59 0.17 -5.90 16 3 C 0.28 14.84 2.24 44.25 0.10 14.94 16 4 H 0.00 -0.29 7.58 -2.39 -0.02 -0.31 16 5 C -0.55 -29.12 8.73 25.60 0.22 -28.89 16 6 H 0.07 3.62 7.74 -2.91 -0.02 3.60 16 7 C 0.01 0.79 5.29 84.65 0.45 1.24 16 8 N -0.92 -52.98 11.29 21.45 0.24 -52.74 16 9 Si 0.97 42.03 29.54 68.60 2.03 44.06 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 13 N -0.70 -30.18 4.98 -449.27 -2.24 -32.42 16 14 C 0.54 23.69 6.34 86.69 0.55 24.24 16 15 O -0.57 -29.58 12.33 16.83 0.21 -29.37 16 16 C -0.23 -7.89 5.90 -19.91 -0.12 -8.01 16 17 C -0.01 -0.24 9.64 22.72 0.22 -0.02 16 18 C -0.20 -3.08 10.09 22.32 0.23 -2.86 16 19 C 0.16 2.63 11.17 84.71 0.95 3.57 16 20 N -0.55 -13.71 8.64 -308.00 -2.66 -16.37 16 21 C 0.35 11.49 7.48 85.13 0.64 12.13 16 22 O -0.29 -10.76 7.87 -66.49 -0.52 -11.28 16 23 C 0.08 2.22 2.46 30.71 0.08 2.29 16 24 C -0.16 -4.04 5.77 30.69 0.18 -3.86 16 25 C 0.07 1.30 6.84 72.02 0.49 1.80 16 26 O -0.40 -8.88 10.77 -148.98 -1.60 -10.48 16 27 C 0.07 1.36 6.84 72.01 0.49 1.85 16 28 C -0.15 -3.95 5.79 30.68 0.18 -3.77 16 29 H 0.04 1.84 5.64 -2.39 -0.01 1.82 16 30 H 0.02 1.24 7.84 -2.39 -0.02 1.22 16 31 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 32 H 0.07 4.15 5.95 -2.38 -0.01 4.13 16 33 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 35 H 0.40 14.22 6.64 -92.71 -0.62 13.60 16 36 H 0.16 3.06 6.52 -2.91 -0.02 3.04 16 37 H 0.19 1.19 8.06 -2.91 -0.02 1.17 16 38 H 0.21 1.36 8.06 -2.91 -0.02 1.33 16 39 H 0.10 2.41 6.99 -2.39 -0.02 2.40 16 40 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 43 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 44 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 47 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -76.33 376.02 1.25 -75.08 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: 0.37 Total: 29.97 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 5.42 Total: 3.55 kcal Atomic # 7 Polarization: -96.87 SS G_CDS: -4.65 Total: -101.52 kcal Atomic # 8 Polarization: -49.22 SS G_CDS: -1.92 Total: -51.14 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -76.33 1.25 -75.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192154019.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.261 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds