Wall clock time and date at job start Tue Mar 31 2020 17:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 H 1.08995 * 109.47417 * 304.98730 * 3 2 1 5 5 C 1.50700 * 109.47187 * 184.98600 * 3 2 1 6 6 H 1.07999 * 119.99952 * 245.24756 * 5 3 2 7 7 C 1.37874 * 120.00063 * 65.24121 * 5 3 2 8 8 N 1.31523 * 119.99803 * 7.07422 * 7 5 3 9 9 Si 1.86793 * 120.00155 * 187.06561 * 7 5 3 10 10 H 1.48501 * 109.47281 * 94.99562 * 9 7 5 11 11 H 1.48505 * 109.47301 * 214.99600 * 9 7 5 12 12 H 1.48503 * 109.47471 * 334.99565 * 9 7 5 13 13 N 1.46498 * 109.46857 * 64.98714 * 3 2 1 14 14 C 1.34772 * 120.00260 * 274.99724 * 13 3 2 15 15 O 1.21519 * 119.99906 * 0.02562 * 14 13 3 16 16 C 1.48182 * 120.00610 * 179.97438 * 14 13 3 17 17 C 1.39099 * 119.70192 * 179.72411 * 16 14 13 18 18 C 1.39236 * 118.98478 * 179.77963 * 17 16 14 19 19 O 1.35738 * 120.81613 * 180.22630 * 18 17 16 20 20 C 1.42903 * 117.00151 * 5.11379 * 19 18 17 21 21 C 1.53172 * 109.54910 * 273.68286 * 20 19 18 22 22 C 1.53103 * 109.16059 * 183.24045 * 21 20 19 23 23 O 1.42906 * 109.48480 * 57.47340 * 22 21 20 24 24 C 1.42900 * 114.09735 * 298.88740 * 23 22 21 25 25 C 1.53095 * 109.41414 * 61.16242 * 24 23 22 26 26 C 1.39223 * 118.36932 * 0.49366 * 18 17 16 27 27 C 1.38309 * 119.28574 * 359.75017 * 26 18 17 28 28 N 1.31618 * 120.97460 * 359.97438 * 27 26 18 29 29 H 1.09005 * 109.46978 * 299.99254 * 1 2 3 30 30 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47237 * 59.99488 * 1 2 3 32 32 H 1.08997 * 109.47237 * 120.00512 * 2 1 3 33 33 H 1.09003 * 109.46729 * 240.00267 * 2 1 3 34 34 H 0.97001 * 119.99804 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00200 * 94.99728 * 13 3 2 36 36 H 1.08004 * 120.50908 * 0.02562 * 17 16 14 37 37 H 1.09007 * 109.53722 * 33.86389 * 20 19 18 38 38 H 1.09001 * 109.52396 * 303.06153 * 21 20 19 39 39 H 1.09003 * 109.52295 * 63.23824 * 21 20 19 40 40 H 1.09002 * 109.40063 * 297.49606 * 22 21 20 41 41 H 1.09000 * 109.49302 * 177.51049 * 22 21 20 42 42 H 1.08996 * 109.48657 * 301.17990 * 24 23 22 43 43 H 1.09005 * 109.49012 * 181.14753 * 24 23 22 44 44 H 1.09001 * 109.52205 * 182.48534 * 25 24 23 45 45 H 1.09005 * 109.52203 * 62.29392 * 25 24 23 46 46 H 1.08000 * 120.35362 * 179.77390 * 26 18 17 47 47 H 1.08000 * 119.50895 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1235 6 1 4.1502 1.8117 0.6898 7 6 4.1396 0.9766 -1.2746 8 7 3.4020 0.6597 -2.3164 9 14 5.9968 0.7934 -1.3547 10 1 6.3715 -0.6031 -1.0158 11 1 6.4671 1.1131 -2.7265 12 1 6.6284 1.7244 -0.3854 13 7 1.6522 2.0975 1.2517 14 6 0.4349 2.6644 1.3666 15 8 -0.3411 2.6319 0.4320 16 6 0.0423 3.3265 2.6328 17 6 -1.2134 3.9147 2.7425 18 6 -1.5686 4.5286 3.9406 19 8 -2.7860 5.1100 4.0899 20 6 -3.7121 4.9625 3.0116 21 6 -3.4773 6.0695 1.9794 22 6 -4.5252 5.9519 0.8693 23 8 -5.8336 6.0300 1.4387 24 6 -6.1253 4.9907 2.3751 25 6 -5.1432 5.0711 3.5468 26 6 -0.6422 4.5366 4.9799 27 6 0.5892 3.9350 4.7932 28 7 0.8946 3.3574 3.6507 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8225 0.3311 -3.1264 35 1 2.2715 2.1232 1.9978 36 1 -1.9039 3.8920 1.9123 37 1 -3.5716 3.9893 2.5411 38 1 -3.5674 7.0427 2.4620 39 1 -2.4796 5.9645 1.5531 40 1 -4.4069 4.9957 0.3597 41 1 -4.3906 6.7639 0.1546 42 1 -6.0280 4.0220 1.8852 43 1 -7.1435 5.1102 2.7455 44 1 -5.3359 4.2526 4.2404 45 1 -5.2681 6.0235 4.0621 46 1 -0.8827 5.0070 5.9218 47 1 1.3104 3.9387 5.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199544229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:29 Heat of formation + Delta-G solvation = -93.807826 kcal Electronic energy + Delta-G solvation = -29132.383100 eV Core-core repulsion = 25087.287464 eV Total energy + Delta-G solvation = -4045.095636 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.09007 -39.80900 -38.75209 -37.86053 -35.10321 -33.41465 -32.41140 -31.69161 -31.54190 -31.10667 -30.59843 -27.09954 -25.53714 -24.64134 -23.94657 -23.02578 -22.87842 -20.78838 -20.74322 -19.45437 -18.72677 -17.31997 -16.99656 -16.54673 -16.34644 -15.81931 -15.68640 -15.44488 -15.31873 -15.09690 -14.70584 -14.62663 -14.24297 -14.00829 -13.72119 -13.59485 -13.28908 -12.98272 -12.71003 -12.68152 -12.19905 -11.96267 -11.75141 -11.48896 -11.38793 -11.29127 -11.04701 -11.00437 -10.79791 -10.78032 -10.36223 -10.21815 -10.09071 -9.87030 -9.68621 -9.25583 -9.14155 -9.08724 -9.01088 -8.49329 -7.85520 -6.13730 -4.19590 0.72657 1.19255 2.66442 3.17329 3.26058 3.33230 3.35764 3.49032 3.80424 4.10134 4.20637 4.26586 4.32889 4.41003 4.50527 4.54892 4.62923 4.81244 4.86081 5.02130 5.03849 5.12365 5.19373 5.19686 5.30418 5.33145 5.36157 5.54618 5.57850 5.63490 5.65945 5.81281 5.94148 6.33196 6.37811 6.38084 6.57896 6.78035 6.97584 6.98715 7.13914 7.29568 7.37746 7.58590 7.70469 7.78851 7.90542 8.07469 8.66120 8.77815 9.07316 9.46358 10.94335 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002780 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.110087 B =10068.788645 C =11026.388572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.121 4.121 3 C 0.266 3.734 4 H 0.057 0.943 5 C -0.535 4.535 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.899 3.101 10 H -0.279 1.279 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.550 3.450 15 O -0.543 6.543 16 C 0.132 3.868 17 C -0.210 4.210 18 C 0.162 3.838 19 O -0.301 6.301 20 C 0.080 3.920 21 C -0.182 4.182 22 C 0.063 3.937 23 O -0.381 6.381 24 C 0.064 3.936 25 C -0.150 4.150 26 C -0.197 4.197 27 C 0.133 3.867 28 N -0.481 5.481 29 H 0.038 0.962 30 H 0.024 0.976 31 H 0.052 0.948 32 H 0.035 0.965 33 H 0.084 0.916 34 H 0.264 0.736 35 H 0.400 0.600 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.103 0.897 42 H 0.056 0.944 43 H 0.103 0.897 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.143 0.857 47 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.144 8.647 13.709 22.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.160 4.160 3 C 0.165 3.835 4 H 0.075 0.925 5 C -0.573 4.573 6 H 0.081 0.919 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.726 3.274 10 H -0.205 1.205 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.326 5.326 14 C 0.333 3.667 15 O -0.422 6.422 16 C -0.006 4.006 17 C -0.232 4.232 18 C 0.109 3.891 19 O -0.213 6.213 20 C 0.024 3.976 21 C -0.220 4.220 22 C -0.014 4.014 23 O -0.299 6.299 24 C -0.013 4.013 25 C -0.188 4.188 26 C -0.218 4.218 27 C -0.025 4.025 28 N -0.195 5.195 29 H 0.057 0.943 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.054 0.946 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.235 0.765 36 H 0.169 0.831 37 H 0.099 0.901 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.121 0.879 44 H 0.103 0.897 45 H 0.103 0.897 46 H 0.161 0.839 47 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -15.079 8.397 12.782 21.477 hybrid contribution 0.759 -0.003 0.400 0.858 sum -14.320 8.394 13.181 21.196 Atomic orbital electron populations 1.21849 0.98165 0.98230 1.01348 1.21860 0.92865 0.99733 1.01506 1.18900 0.94629 0.89049 0.80962 0.92511 1.21208 0.90462 1.43618 1.02022 0.91884 1.24883 0.98556 0.95061 0.95033 1.69977 1.35429 1.43402 1.03052 0.86470 0.84951 0.78485 0.77446 1.20540 1.21152 1.19759 1.46416 1.14014 1.53343 1.18783 1.17797 0.83620 0.79855 0.85438 1.90746 1.51908 1.60617 1.38881 1.21503 0.90072 0.94992 0.94071 1.22216 0.99396 1.03099 0.98453 1.19221 0.85587 0.91006 0.93329 1.86095 1.21295 1.70678 1.43206 1.22584 0.88408 0.99640 0.86994 1.22801 1.01387 1.00271 0.97542 1.22595 0.81378 1.03017 0.94395 1.87954 1.32330 1.50591 1.59070 1.22588 0.98748 0.91336 0.88654 1.22299 0.92116 1.04668 0.99678 1.21625 0.94525 1.06121 0.99554 1.22670 0.93880 0.91436 0.94564 1.67705 1.34166 1.17493 1.00178 0.94254 0.95678 0.92913 0.94582 0.89782 0.92594 0.76538 0.83149 0.90057 0.89730 0.89635 0.92271 0.87893 0.92539 0.87885 0.89739 0.89692 0.83928 0.81554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 8.51 37.16 0.32 -2.73 16 2 C -0.12 -2.90 5.49 -26.73 -0.15 -3.05 16 3 C 0.27 6.73 2.11 -69.08 -0.15 6.58 16 4 H 0.06 1.65 7.54 -51.93 -0.39 1.26 16 5 C -0.53 -14.24 8.67 -34.44 -0.30 -14.54 16 6 H 0.06 1.63 7.73 -52.49 -0.41 1.22 16 7 C 0.07 1.84 5.20 -17.82 -0.09 1.75 16 8 N -0.88 -24.80 12.03 55.43 0.67 -24.13 16 9 Si 0.90 20.71 29.54 -169.99 -5.02 15.69 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 11 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 13 N -0.68 -14.79 5.01 -55.78 -0.28 -15.07 16 14 C 0.55 11.40 6.38 -12.18 -0.08 11.32 16 15 O -0.54 -12.40 13.45 5.35 0.07 -12.33 16 16 C 0.13 2.26 6.75 -83.04 -0.56 1.70 16 17 C -0.21 -3.08 7.94 -38.89 -0.31 -3.39 16 18 C 0.16 2.03 6.66 -38.84 -0.26 1.77 16 19 O -0.30 -3.42 9.82 -18.92 -0.19 -3.60 16 20 C 0.08 0.78 2.19 -26.55 -0.06 0.72 16 21 C -0.18 -1.75 5.49 -26.59 -0.15 -1.90 16 22 C 0.06 0.57 6.84 37.21 0.25 0.82 16 23 O -0.38 -3.71 10.77 -35.23 -0.38 -4.09 16 24 C 0.06 0.47 6.84 37.21 0.25 0.73 16 25 C -0.15 -1.16 5.79 -26.59 -0.15 -1.31 16 26 C -0.20 -2.16 10.08 -39.19 -0.39 -2.55 16 27 C 0.13 1.55 11.17 -17.62 -0.20 1.35 16 28 N -0.48 -7.43 9.54 -9.87 -0.09 -7.52 16 29 H 0.04 0.85 5.65 -51.93 -0.29 0.55 16 30 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 1.22 7.84 -51.93 -0.41 0.82 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.08 2.21 6.68 -51.93 -0.35 1.86 16 34 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.40 8.13 7.85 -40.82 -0.32 7.81 16 36 H 0.15 2.18 5.22 -52.48 -0.27 1.90 16 37 H 0.08 0.84 6.27 -51.92 -0.33 0.51 16 38 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.91 7.11 -51.93 -0.37 0.54 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 47 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 LS Contribution 377.20 15.07 5.68 5.68 Total: -1.00 -30.88 377.20 -8.47 -39.35 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.92 Total: 8.75 kcal Atomic # 6 Polarization: -0.71 SS G_CDS: -2.01 Total: -2.73 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.29 Total: -46.72 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: -0.49 Total: -20.02 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.88 -8.47 -39.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199544229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.460 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds