Wall clock time and date at job start Tue Mar 31 2020 17:59:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47251 * 2 1 4 4 H 1.08995 * 109.47417 * 304.98730 * 3 2 1 5 5 C 1.50700 * 109.47187 * 184.98600 * 3 2 1 6 6 H 1.07999 * 119.99952 * 245.24756 * 5 3 2 7 7 C 1.37874 * 120.00063 * 65.24121 * 5 3 2 8 8 N 1.31523 * 119.99803 * 7.07422 * 7 5 3 9 9 Si 1.86793 * 120.00155 * 187.06561 * 7 5 3 10 10 H 1.48501 * 109.47281 * 94.99562 * 9 7 5 11 11 H 1.48505 * 109.47301 * 214.99600 * 9 7 5 12 12 H 1.48503 * 109.47471 * 334.99565 * 9 7 5 13 13 N 1.46498 * 109.46857 * 64.98714 * 3 2 1 14 14 C 1.34772 * 120.00260 * 274.99724 * 13 3 2 15 15 O 1.21519 * 119.99906 * 0.02562 * 14 13 3 16 16 C 1.48182 * 120.00610 * 179.97438 * 14 13 3 17 17 C 1.39099 * 119.70192 * 179.72411 * 16 14 13 18 18 C 1.39236 * 118.98478 * 179.77963 * 17 16 14 19 19 O 1.35738 * 120.81613 * 180.22630 * 18 17 16 20 20 C 1.42903 * 117.00151 * 5.11379 * 19 18 17 21 21 C 1.53172 * 109.54910 * 273.68286 * 20 19 18 22 22 C 1.53103 * 109.16059 * 183.24045 * 21 20 19 23 23 O 1.42906 * 109.48480 * 57.47340 * 22 21 20 24 24 C 1.42900 * 114.09735 * 298.88740 * 23 22 21 25 25 C 1.53095 * 109.41414 * 61.16242 * 24 23 22 26 26 C 1.39223 * 118.36932 * 0.49366 * 18 17 16 27 27 C 1.38309 * 119.28574 * 359.75017 * 26 18 17 28 28 N 1.31618 * 120.97460 * 359.97438 * 27 26 18 29 29 H 1.09005 * 109.46978 * 299.99254 * 1 2 3 30 30 H 1.08998 * 109.47248 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47237 * 59.99488 * 1 2 3 32 32 H 1.08997 * 109.47237 * 120.00512 * 2 1 3 33 33 H 1.09003 * 109.46729 * 240.00267 * 2 1 3 34 34 H 0.97001 * 119.99804 * 179.97438 * 8 7 5 35 35 H 0.96998 * 120.00200 * 94.99728 * 13 3 2 36 36 H 1.08004 * 120.50908 * 0.02562 * 17 16 14 37 37 H 1.09007 * 109.53722 * 33.86389 * 20 19 18 38 38 H 1.09001 * 109.52396 * 303.06153 * 21 20 19 39 39 H 1.09003 * 109.52295 * 63.23824 * 21 20 19 40 40 H 1.09002 * 109.40063 * 297.49606 * 22 21 20 41 41 H 1.09000 * 109.49302 * 177.51049 * 22 21 20 42 42 H 1.08996 * 109.48657 * 301.17990 * 24 23 22 43 43 H 1.09005 * 109.49012 * 181.14753 * 24 23 22 44 44 H 1.09001 * 109.52205 * 182.48534 * 25 24 23 45 45 H 1.09005 * 109.52203 * 62.29392 * 25 24 23 46 46 H 1.08000 * 120.35362 * 179.77390 * 26 18 17 47 47 H 1.08000 * 119.50895 * 180.02562 * 27 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6056 1.9815 -0.8419 5 6 3.5420 1.4442 -0.1235 6 1 4.1502 1.8117 0.6898 7 6 4.1396 0.9766 -1.2746 8 7 3.4020 0.6597 -2.3164 9 14 5.9968 0.7934 -1.3547 10 1 6.3715 -0.6031 -1.0158 11 1 6.4671 1.1131 -2.7265 12 1 6.6284 1.7244 -0.3854 13 7 1.6522 2.0975 1.2517 14 6 0.4349 2.6644 1.3666 15 8 -0.3411 2.6319 0.4320 16 6 0.0423 3.3265 2.6328 17 6 -1.2134 3.9147 2.7425 18 6 -1.5686 4.5286 3.9406 19 8 -2.7860 5.1100 4.0899 20 6 -3.7121 4.9625 3.0116 21 6 -3.4773 6.0695 1.9794 22 6 -4.5252 5.9519 0.8693 23 8 -5.8336 6.0300 1.4387 24 6 -6.1253 4.9907 2.3751 25 6 -5.1432 5.0711 3.5468 26 6 -0.6422 4.5366 4.9799 27 6 0.5892 3.9350 4.7932 28 7 0.8946 3.3574 3.6507 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8225 0.3311 -3.1264 35 1 2.2715 2.1232 1.9978 36 1 -1.9039 3.8920 1.9123 37 1 -3.5716 3.9893 2.5411 38 1 -3.5674 7.0427 2.4620 39 1 -2.4796 5.9645 1.5531 40 1 -4.4069 4.9957 0.3597 41 1 -4.3906 6.7639 0.1546 42 1 -6.0280 4.0220 1.8852 43 1 -7.1435 5.1102 2.7455 44 1 -5.3359 4.2526 4.2404 45 1 -5.2681 6.0235 4.0621 46 1 -0.8827 5.0070 5.9218 47 1 1.3104 3.9387 5.5972 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199544229.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:29 Heat of formation + Delta-G solvation = -114.546118 kcal Electronic energy + Delta-G solvation = -29133.282379 eV Core-core repulsion = 25087.287464 eV Total energy + Delta-G solvation = -4045.994916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.10267 -40.90713 -40.02782 -38.84931 -36.98458 -34.43029 -34.12774 -33.11737 -32.48919 -32.08047 -31.94770 -29.03518 -26.39282 -25.96375 -24.86198 -24.56089 -23.94377 -22.35177 -21.50201 -21.23858 -20.06990 -18.56945 -18.27231 -17.50485 -17.30654 -17.17623 -16.96885 -16.70255 -16.48891 -16.19916 -16.17245 -15.78576 -15.45733 -15.06728 -14.91424 -14.68383 -14.56387 -14.43033 -14.02895 -13.70139 -13.45507 -13.39534 -13.28835 -13.02050 -12.92722 -12.64698 -12.42884 -12.24947 -12.16878 -12.09922 -11.78726 -11.67091 -11.50101 -11.19543 -11.10025 -10.78001 -10.58798 -10.55050 -10.36466 -9.98090 -9.68077 -8.19922 -6.33750 -0.41357 0.18341 1.44346 1.44866 1.55904 1.79384 1.82672 2.27518 2.48170 2.83762 2.83982 3.11706 3.24449 3.45530 3.51540 3.60549 3.75963 3.83438 3.85429 3.99841 4.13323 4.16013 4.39641 4.44176 4.45591 4.50080 4.50442 4.54414 4.65176 4.66499 4.70049 4.70487 4.87155 4.92991 4.95020 5.02972 5.06989 5.19768 5.38214 5.41449 5.47637 5.59013 5.72328 5.86502 6.04684 6.05026 6.11275 6.68085 6.73128 6.98201 7.29117 7.45123 8.88590 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016133 B = 0.002780 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1735.110087 B =10068.788645 C =11026.388572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.113 4.113 3 C 0.275 3.725 4 H 0.008 0.992 5 C -0.550 4.550 6 H 0.068 0.932 7 C 0.019 3.981 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.264 1.264 13 N -0.681 5.681 14 C 0.548 3.452 15 O -0.574 6.574 16 C 0.105 3.895 17 C -0.210 4.210 18 C 0.159 3.841 19 O -0.298 6.298 20 C 0.074 3.926 21 C -0.178 4.178 22 C 0.063 3.937 23 O -0.395 6.395 24 C 0.059 3.941 25 C -0.142 4.142 26 C -0.175 4.175 27 C 0.134 3.866 28 N -0.500 5.500 29 H 0.040 0.960 30 H 0.050 0.950 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.059 0.941 34 H 0.266 0.734 35 H 0.408 0.592 36 H 0.143 0.857 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.069 0.931 40 H 0.054 0.946 41 H 0.111 0.889 42 H 0.059 0.941 43 H 0.126 0.874 44 H 0.098 0.902 45 H 0.087 0.913 46 H 0.181 0.819 47 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.227 9.254 16.742 24.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.152 4.152 3 C 0.172 3.828 4 H 0.026 0.974 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.793 3.207 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.189 1.189 13 N -0.329 5.329 14 C 0.333 3.667 15 O -0.455 6.455 16 C -0.032 4.032 17 C -0.233 4.233 18 C 0.106 3.894 19 O -0.209 6.209 20 C 0.018 3.982 21 C -0.216 4.216 22 C -0.014 4.014 23 O -0.314 6.314 24 C -0.018 4.018 25 C -0.180 4.180 26 C -0.196 4.196 27 C -0.024 4.024 28 N -0.215 5.215 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.243 0.757 36 H 0.160 0.840 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.072 0.928 41 H 0.129 0.871 42 H 0.077 0.923 43 H 0.144 0.856 44 H 0.117 0.883 45 H 0.106 0.894 46 H 0.199 0.801 47 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -15.174 9.014 15.846 23.719 hybrid contribution 0.686 -0.106 -0.456 0.831 sum -14.488 8.908 15.390 22.937 Atomic orbital electron populations 1.21684 0.96647 0.99522 1.00340 1.21709 0.94146 0.98776 1.00610 1.18504 0.94009 0.89269 0.81025 0.97410 1.21524 0.91229 1.43697 1.02384 0.91338 1.25748 1.03281 0.94572 0.94554 1.70114 1.37432 1.44114 1.03615 0.85390 0.79135 0.78778 0.77404 1.19691 1.21116 1.18851 1.46188 1.14911 1.53956 1.17813 1.18348 0.82640 0.79028 0.86654 1.90714 1.52576 1.61587 1.40576 1.20858 0.91546 0.97459 0.93302 1.22150 0.98429 1.03246 0.99425 1.19367 0.86447 0.90719 0.92912 1.86111 1.20870 1.70353 1.43578 1.22756 0.89368 0.99163 0.86914 1.22740 1.00712 1.00389 0.97714 1.22601 0.81256 1.03145 0.94351 1.87935 1.32278 1.51528 1.59639 1.22801 0.99828 0.90947 0.88201 1.22289 0.90391 1.05381 0.99923 1.22081 0.93305 1.04019 1.00160 1.23380 0.95030 0.89984 0.93964 1.67625 1.34283 1.18604 1.01014 0.94103 0.93079 0.95035 0.93581 0.92269 0.92519 0.75663 0.83982 0.90948 0.89447 0.91189 0.92776 0.87086 0.92313 0.85628 0.88335 0.89401 0.80139 0.77433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.62 8.51 71.98 0.61 -5.01 16 2 C -0.11 -5.63 5.49 30.59 0.17 -5.46 16 3 C 0.27 14.51 2.11 44.24 0.09 14.60 16 4 H 0.01 0.50 7.54 -2.39 -0.02 0.48 16 5 C -0.55 -29.94 8.67 25.60 0.22 -29.72 16 6 H 0.07 3.56 7.73 -2.91 -0.02 3.54 16 7 C 0.02 1.04 5.20 84.65 0.44 1.48 16 8 N -0.91 -53.08 12.03 21.45 0.26 -52.82 16 9 Si 0.97 42.70 29.54 68.60 2.03 44.73 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 11 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 13 N -0.68 -30.69 5.01 -448.67 -2.25 -32.94 16 14 C 0.55 23.64 6.38 86.89 0.55 24.19 16 15 O -0.57 -27.76 13.45 -3.78 -0.05 -27.81 16 16 C 0.11 3.63 6.75 41.85 0.28 3.91 16 17 C -0.21 -6.18 7.94 22.72 0.18 -6.00 16 18 C 0.16 3.69 6.66 22.75 0.15 3.85 16 19 O -0.30 -6.15 9.82 -90.62 -0.89 -7.04 16 20 C 0.07 1.38 2.19 30.71 0.07 1.45 16 21 C -0.18 -3.39 5.49 30.69 0.17 -3.22 16 22 C 0.06 1.15 6.84 72.02 0.49 1.64 16 23 O -0.39 -7.35 10.77 -148.98 -1.60 -8.95 16 24 C 0.06 0.78 6.84 72.01 0.49 1.27 16 25 C -0.14 -1.93 5.79 30.69 0.18 -1.75 16 26 C -0.18 -3.18 10.08 22.52 0.23 -2.95 16 27 C 0.13 2.69 11.17 84.74 0.95 3.64 16 28 N -0.50 -14.82 9.54 -185.14 -1.77 -16.58 16 29 H 0.04 1.80 5.65 -2.38 -0.01 1.79 16 30 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 31 H 0.03 1.52 7.84 -2.39 -0.02 1.50 16 32 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 33 H 0.06 3.22 6.68 -2.39 -0.02 3.21 16 34 H 0.27 14.55 8.31 -92.71 -0.77 13.78 16 35 H 0.41 16.86 7.85 -92.71 -0.73 16.14 16 36 H 0.14 4.32 5.22 -2.91 -0.02 4.30 16 37 H 0.07 1.50 6.27 -2.38 -0.01 1.48 16 38 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.54 7.11 -2.39 -0.02 1.53 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 43 H 0.13 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 46 H 0.18 1.94 8.06 -2.91 -0.02 1.92 16 47 H 0.21 2.33 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -69.51 377.20 1.27 -68.25 By element: Atomic # 1 Polarization: 31.00 SS G_CDS: 0.26 Total: 31.27 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 5.28 Total: 1.90 kcal Atomic # 7 Polarization: -98.58 SS G_CDS: -3.76 Total: -102.34 kcal Atomic # 8 Polarization: -41.26 SS G_CDS: -2.54 Total: -43.80 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.73 kcal Total: -69.51 1.27 -68.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199544229.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.301 kcal (2) G-P(sol) polarization free energy of solvation -69.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds