Wall clock time and date at job start Tue Mar 31 2020 17:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.50704 * 109.46955 * 119.99924 * 2 1 3 5 5 O 1.21278 * 120.00213 * 119.99894 * 4 2 1 6 6 N 1.34776 * 119.99969 * 300.00262 * 4 2 1 7 7 C 1.46501 * 120.00046 * 179.97438 * 6 4 2 8 8 H 1.09003 * 112.88471 * 23.65353 * 7 6 4 9 9 C 1.53947 * 113.66461 * 252.18692 * 7 6 4 10 10 C 1.53957 * 87.29654 * 270.26059 * 9 7 6 11 11 H 1.08999 * 113.74605 * 89.74708 * 10 9 7 12 12 N 1.46499 * 113.66372 * 220.79461 * 10 9 7 13 13 C 1.36939 * 119.99933 * 252.46113 * 12 10 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 10 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 10 16 16 N 1.31624 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47080 * 120.00466 * 17 15 13 20 20 H 1.48506 * 109.47018 * 240.00565 * 17 15 13 21 21 C 1.52908 * 86.77901 * 335.26633 * 10 9 7 22 22 C 1.52908 * 121.13642 * 259.17649 * 21 10 9 23 23 C 1.53946 * 86.78542 * 209.38235 * 22 21 10 24 24 C 1.52910 * 121.13509 * 150.61875 * 21 10 9 25 25 C 1.53000 * 109.47666 * 239.99841 * 2 1 3 26 26 F 1.39908 * 109.46836 * 300.00388 * 25 2 1 27 27 F 1.39901 * 109.46693 * 59.99835 * 25 2 1 28 28 F 1.39890 * 109.47323 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.47997 * 300.00050 * 1 2 3 30 30 H 1.09008 * 109.47032 * 60.00349 * 1 2 3 31 31 H 1.09006 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47260 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46974 * 300.00035 * 3 2 1 34 34 H 1.09002 * 109.46690 * 59.99716 * 3 2 1 35 35 H 0.96994 * 120.00019 * 359.97438 * 6 4 2 36 36 H 1.09000 * 113.58267 * 155.65971 * 9 7 6 37 37 H 1.08999 * 113.57745 * 24.86211 * 9 7 6 38 38 H 0.97001 * 119.99790 * 72.18086 * 12 10 9 39 39 H 0.96998 * 119.99409 * 179.97438 * 16 15 13 40 40 H 1.09002 * 113.66478 * 323.85928 * 22 21 10 41 41 H 1.09008 * 113.65934 * 94.91137 * 22 21 10 42 42 H 1.08996 * 113.58314 * 270.13495 * 23 22 21 43 43 H 1.08999 * 113.65166 * 139.34935 * 23 22 21 44 44 H 1.09004 * 113.66092 * 265.08702 * 24 21 10 45 45 H 1.08994 * 113.66382 * 36.05415 * 24 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1944 -0.9409 3.6508 8 1 3.0981 -1.5217 3.4660 9 6 1.1005 -1.7193 4.4041 10 6 0.8416 -0.4328 5.2092 11 1 0.0985 0.2250 4.7584 12 7 0.6029 -0.6695 6.6351 13 6 -0.6572 -0.5257 7.1515 14 1 -1.4742 -0.2335 6.5084 15 6 -0.8844 -0.7556 8.5014 16 7 0.1114 -1.1114 9.2852 17 14 -2.6032 -0.5587 9.2060 18 1 -3.5378 -0.1542 8.1253 19 1 -3.0501 -1.8494 9.7889 20 1 -2.5881 0.4834 10.2639 21 6 2.2840 -0.0424 4.8848 22 6 3.4016 -0.2205 5.9131 23 6 4.0936 0.9788 5.2403 24 6 2.6984 1.4247 4.7663 25 6 2.0401 -0.7213 -1.2492 26 9 1.5737 -2.0403 -1.2492 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7217 -1.2488 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.1492 0.5389 2.5436 36 1 1.4868 -2.5408 5.0073 37 1 0.2624 -2.0147 3.7728 38 1 1.3367 -0.9321 7.2126 39 1 -0.0474 -1.2717 10.2285 40 1 3.0877 -0.0257 6.9386 41 1 3.9486 -1.1574 5.8068 42 1 4.7611 0.6966 4.4261 43 1 4.5557 1.6692 5.9459 44 1 2.6837 1.8022 3.7438 45 1 2.1857 2.0822 5.4684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203640988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:42 Heat of formation + Delta-G solvation = -140.205941 kcal Electronic energy + Delta-G solvation = -30732.115798 eV Core-core repulsion = 26143.151449 eV Total energy + Delta-G solvation = -4588.964349 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.25919 -47.76397 -47.64014 -40.90696 -39.44394 -35.68663 -35.16732 -34.13093 -32.22692 -29.82357 -27.95789 -26.44501 -25.56166 -25.07297 -24.21673 -23.45817 -22.05065 -20.65743 -20.00352 -18.99045 -18.46977 -18.26547 -17.48301 -17.02825 -16.66492 -15.78792 -15.39875 -15.19984 -15.05198 -14.71306 -14.41178 -14.34737 -14.09132 -13.92849 -13.85998 -13.82334 -13.72266 -13.45630 -13.22854 -12.74481 -12.74071 -12.72121 -12.51882 -12.16900 -11.92657 -11.82592 -11.73471 -11.55427 -11.44239 -10.99040 -10.88270 -10.72795 -10.25889 -10.15795 -10.02363 -9.91783 -9.72175 -9.43278 -8.90357 -8.86132 -7.01557 -5.84633 -3.13262 2.33292 2.34168 2.83789 3.38045 3.43883 3.44624 3.46168 3.76446 3.88283 4.33302 4.40282 4.51586 4.52552 4.67262 4.89936 4.97535 5.01185 5.11345 5.14045 5.16161 5.16984 5.19622 5.38459 5.54512 5.58823 5.62462 5.76096 5.86011 5.95160 5.98200 6.05308 6.12960 6.16268 6.29637 6.35535 6.39554 6.56175 6.71966 6.86082 6.96968 7.34885 7.63469 7.98844 8.34069 9.45801 10.03164 10.37742 11.37669 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003081 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.852676 B = 9084.346653 C = 9814.988457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.148 4.148 4 C 0.528 3.472 5 O -0.522 6.522 6 N -0.692 5.692 7 C 0.142 3.858 8 H 0.098 0.902 9 C -0.174 4.174 10 C 0.181 3.819 11 H 0.074 0.926 12 N -0.708 5.708 13 C -0.245 4.245 14 H 0.071 0.929 15 C -0.011 4.011 16 N -0.930 5.930 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.291 1.291 21 C -0.125 4.125 22 C -0.105 4.105 23 C -0.140 4.140 24 C -0.123 4.123 25 C 0.475 3.525 26 F -0.171 7.171 27 F -0.182 7.182 28 F -0.172 7.172 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.402 0.598 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.387 0.613 39 H 0.255 0.745 40 H 0.098 0.902 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.667 6.681 -19.665 21.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.137 4.137 3 C -0.206 4.206 4 C 0.311 3.689 5 O -0.397 6.397 6 N -0.342 5.342 7 C 0.037 3.963 8 H 0.116 0.884 9 C -0.217 4.217 10 C 0.068 3.932 11 H 0.092 0.908 12 N -0.346 5.346 13 C -0.376 4.376 14 H 0.089 0.911 15 C -0.207 4.207 16 N -0.578 5.578 17 Si 0.737 3.263 18 H -0.206 1.206 19 H -0.218 1.218 20 H -0.219 1.219 21 C -0.128 4.128 22 C -0.142 4.142 23 C -0.178 4.178 24 C -0.160 4.160 25 C 0.421 3.579 26 F -0.153 7.153 27 F -0.163 7.163 28 F -0.154 7.154 29 H 0.105 0.895 30 H 0.101 0.899 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.101 0.899 34 H 0.104 0.896 35 H 0.237 0.763 36 H 0.106 0.894 37 H 0.078 0.922 38 H 0.222 0.778 39 H 0.065 0.935 40 H 0.116 0.884 41 H 0.082 0.918 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.076 0.924 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.986 5.979 -19.676 21.160 hybrid contribution -0.924 0.159 0.451 1.041 sum 4.062 6.138 -19.225 20.586 Atomic orbital electron populations 1.21970 0.88875 1.04857 1.04983 1.22117 1.00930 0.98973 0.91665 1.21958 1.02957 0.90698 1.04951 1.19597 0.80690 0.84478 0.84096 1.90805 1.37220 1.25401 1.86273 1.45431 1.52640 1.31548 1.04536 1.21595 0.98513 0.94215 0.82017 0.88358 1.24311 0.97486 1.00844 0.99027 1.21385 0.92018 0.93211 0.86581 0.90790 1.42373 1.08757 1.80705 1.02755 1.19320 0.86746 1.39257 0.92255 0.91127 1.24748 0.97429 1.02177 0.96352 1.69664 1.29975 1.53216 1.04982 0.86142 0.83964 0.77294 0.78904 1.20565 1.21840 1.21858 1.23444 0.98721 0.95148 0.95451 1.22468 0.94922 0.97902 0.98950 1.22825 0.96351 0.98534 1.00059 1.22635 0.96744 0.96045 1.00579 1.19748 0.75973 0.77742 0.84468 1.93212 1.88288 1.37120 1.96637 1.93163 1.88588 1.80882 1.53673 1.93199 1.29199 1.96317 1.96646 0.89506 0.89906 0.90402 0.90531 0.89894 0.89617 0.76318 0.89429 0.92217 0.77765 0.93461 0.88364 0.91804 0.90956 0.91843 0.92395 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.13 37.15 0.30 -0.80 16 2 C -0.13 -1.25 0.44 -155.66 -0.07 -1.32 16 3 C -0.15 -1.01 8.13 37.16 0.30 -0.71 16 4 C 0.53 6.68 6.25 -10.98 -0.07 6.62 16 5 O -0.52 -8.75 14.43 5.56 0.08 -8.67 16 6 N -0.69 -8.05 4.59 -53.37 -0.24 -8.29 16 7 C 0.14 2.03 4.12 -67.48 -0.28 1.75 16 8 H 0.10 1.54 7.46 -51.93 -0.39 1.15 16 9 C -0.17 -2.93 7.68 -25.75 -0.20 -3.13 16 10 C 0.18 3.24 4.27 -67.48 -0.29 2.96 16 11 H 0.07 1.29 8.10 -51.93 -0.42 0.87 16 12 N -0.71 -16.49 5.30 -52.99 -0.28 -16.77 16 13 C -0.24 -6.44 9.97 -15.06 -0.15 -6.59 16 14 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 15 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 16 N -0.93 -27.08 13.06 55.49 0.72 -26.35 16 17 Si 0.91 21.65 29.55 -169.99 -5.02 16.62 16 18 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 C -0.13 -1.84 0.92 -154.71 -0.14 -1.99 16 22 C -0.10 -1.59 7.15 -26.29 -0.19 -1.77 16 23 C -0.14 -1.79 8.08 -25.75 -0.21 -2.00 16 24 C -0.12 -1.58 7.62 -26.28 -0.20 -1.78 16 25 C 0.48 5.47 1.95 37.16 0.07 5.54 16 26 F -0.17 -2.31 15.88 2.25 0.04 -2.27 16 27 F -0.18 -1.83 16.28 2.25 0.04 -1.80 16 28 F -0.17 -2.26 15.88 2.25 0.04 -2.22 16 29 H 0.09 0.52 7.57 -51.93 -0.39 0.12 16 30 H 0.08 0.48 7.80 -51.92 -0.41 0.08 16 31 H 0.08 0.66 7.80 -51.93 -0.41 0.26 16 32 H 0.08 0.58 7.80 -51.93 -0.41 0.17 16 33 H 0.08 0.45 7.80 -51.93 -0.41 0.04 16 34 H 0.08 0.44 7.56 -51.93 -0.39 0.05 16 35 H 0.40 3.75 7.26 -40.82 -0.30 3.45 16 36 H 0.09 1.61 8.14 -51.93 -0.42 1.18 16 37 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.39 9.61 6.23 -40.82 -0.25 9.35 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.10 1.73 7.03 -51.93 -0.36 1.36 16 41 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.06 0.63 7.58 -51.93 -0.39 0.23 16 45 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 371.49 15.07 5.60 5.60 Total: -1.00 -30.99 371.49 -6.85 -37.84 By element: Atomic # 1 Polarization: 16.53 SS G_CDS: -6.61 Total: 9.92 kcal Atomic # 6 Polarization: -2.40 SS G_CDS: -1.21 Total: -3.61 kcal Atomic # 7 Polarization: -51.62 SS G_CDS: 0.20 Total: -51.42 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 9 Polarization: -6.40 SS G_CDS: 0.11 Total: -6.29 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -30.99 -6.85 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.361 kcal (2) G-P(sol) polarization free energy of solvation -30.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.206 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds