Wall clock time and date at job start Tue Mar 31 2020 17:34:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47148 * 2 1 4 4 C 1.50704 * 109.46955 * 119.99924 * 2 1 3 5 5 O 1.21278 * 120.00213 * 119.99894 * 4 2 1 6 6 N 1.34776 * 119.99969 * 300.00262 * 4 2 1 7 7 C 1.46501 * 120.00046 * 179.97438 * 6 4 2 8 8 H 1.09003 * 112.88471 * 23.65353 * 7 6 4 9 9 C 1.53947 * 113.66461 * 252.18692 * 7 6 4 10 10 C 1.53957 * 87.29654 * 270.26059 * 9 7 6 11 11 H 1.08999 * 113.74605 * 89.74708 * 10 9 7 12 12 N 1.46499 * 113.66372 * 220.79461 * 10 9 7 13 13 C 1.36939 * 119.99933 * 252.46113 * 12 10 9 14 14 H 1.08001 * 119.99700 * 359.72658 * 13 12 10 15 15 C 1.38810 * 120.00095 * 179.71972 * 13 12 10 16 16 N 1.31624 * 119.99740 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00044 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47201 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47080 * 120.00466 * 17 15 13 20 20 H 1.48506 * 109.47018 * 240.00565 * 17 15 13 21 21 C 1.52908 * 86.77901 * 335.26633 * 10 9 7 22 22 C 1.52908 * 121.13642 * 259.17649 * 21 10 9 23 23 C 1.53946 * 86.78542 * 209.38235 * 22 21 10 24 24 C 1.52910 * 121.13509 * 150.61875 * 21 10 9 25 25 C 1.53000 * 109.47666 * 239.99841 * 2 1 3 26 26 F 1.39908 * 109.46836 * 300.00388 * 25 2 1 27 27 F 1.39901 * 109.46693 * 59.99835 * 25 2 1 28 28 F 1.39890 * 109.47323 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.47997 * 300.00050 * 1 2 3 30 30 H 1.09008 * 109.47032 * 60.00349 * 1 2 3 31 31 H 1.09006 * 109.47376 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47260 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.46974 * 300.00035 * 3 2 1 34 34 H 1.09002 * 109.46690 * 59.99716 * 3 2 1 35 35 H 0.96994 * 120.00019 * 359.97438 * 6 4 2 36 36 H 1.09000 * 113.58267 * 155.65971 * 9 7 6 37 37 H 1.08999 * 113.57745 * 24.86211 * 9 7 6 38 38 H 0.97001 * 119.99790 * 72.18086 * 12 10 9 39 39 H 0.96998 * 119.99409 * 179.97438 * 16 15 13 40 40 H 1.09002 * 113.66478 * 323.85928 * 22 21 10 41 41 H 1.09008 * 113.65934 * 94.91137 * 22 21 10 42 42 H 1.08996 * 113.58314 * 270.13495 * 23 22 21 43 43 H 1.08999 * 113.65166 * 139.34935 * 23 22 21 44 44 H 1.09004 * 113.66092 * 265.08702 * 24 21 10 45 45 H 1.08994 * 113.66382 * 36.05415 * 24 21 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7066 -0.2500 2.4546 7 6 2.1944 -0.9409 3.6508 8 1 3.0981 -1.5217 3.4660 9 6 1.1005 -1.7193 4.4041 10 6 0.8416 -0.4328 5.2092 11 1 0.0985 0.2250 4.7584 12 7 0.6029 -0.6695 6.6351 13 6 -0.6572 -0.5257 7.1515 14 1 -1.4742 -0.2335 6.5084 15 6 -0.8844 -0.7556 8.5014 16 7 0.1114 -1.1114 9.2852 17 14 -2.6032 -0.5587 9.2060 18 1 -3.5378 -0.1542 8.1253 19 1 -3.0501 -1.8494 9.7889 20 1 -2.5881 0.4834 10.2639 21 6 2.2840 -0.0424 4.8848 22 6 3.4016 -0.2205 5.9131 23 6 4.0936 0.9788 5.2403 24 6 2.6984 1.4247 4.7663 25 6 2.0401 -0.7213 -1.2492 26 9 1.5737 -2.0403 -1.2492 27 9 1.5737 -0.0618 -2.3915 28 9 3.4390 -0.7217 -1.2488 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 3.1299 1.4425 0.0005 33 1 1.6766 1.9563 -0.8899 34 1 1.6765 1.9563 0.8900 35 1 1.1492 0.5389 2.5436 36 1 1.4868 -2.5408 5.0073 37 1 0.2624 -2.0147 3.7728 38 1 1.3367 -0.9321 7.2126 39 1 -0.0474 -1.2717 10.2285 40 1 3.0877 -0.0257 6.9386 41 1 3.9486 -1.1574 5.8068 42 1 4.7611 0.6966 4.4261 43 1 4.5557 1.6692 5.9459 44 1 2.6837 1.8022 3.7438 45 1 2.1857 2.0822 5.4684 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203640988.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:42 Heat of formation + Delta-G solvation = -158.966410 kcal Electronic energy + Delta-G solvation = -30732.929313 eV Core-core repulsion = 26143.151449 eV Total energy + Delta-G solvation = -4589.777864 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.16016 -48.63680 -48.60528 -42.08750 -40.54303 -36.52181 -36.45509 -35.72783 -33.72129 -31.59019 -28.48270 -27.22174 -26.73134 -26.68845 -25.44130 -24.81067 -23.36827 -21.80276 -21.07207 -19.95573 -19.42782 -19.38208 -19.14806 -18.17956 -17.67451 -17.01365 -16.67197 -16.39475 -16.15368 -15.97802 -15.54897 -15.41273 -15.31580 -15.01395 -14.96400 -14.79083 -14.73310 -14.41059 -14.13563 -13.98086 -13.88154 -13.47425 -13.40271 -13.32237 -13.20231 -13.15441 -12.86077 -12.71566 -12.57590 -12.45422 -12.30445 -12.10420 -11.98014 -11.80733 -11.35050 -11.21595 -10.95854 -10.83475 -10.64854 -10.05437 -8.93035 -7.92073 -5.19296 1.35186 1.46434 1.48958 1.49980 1.59060 1.89733 2.58260 2.60636 2.96099 3.02896 3.39374 3.44927 3.52643 3.65203 3.68033 3.73941 3.81014 3.95443 4.01414 4.17213 4.31788 4.54707 4.56868 4.58741 4.63933 4.65634 4.67703 4.73334 4.84167 4.97695 4.98412 5.07948 5.08984 5.12678 5.13211 5.13568 5.22495 5.50606 5.52855 5.62536 5.67886 6.30133 6.36099 7.02396 7.37302 8.15217 8.37417 9.31430 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.017832 B = 0.003081 C = 0.002852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1569.852676 B = 9084.346653 C = 9814.988457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.148 4.148 4 C 0.527 3.473 5 O -0.566 6.566 6 N -0.679 5.679 7 C 0.162 3.838 8 H 0.088 0.912 9 C -0.174 4.174 10 C 0.168 3.832 11 H 0.086 0.914 12 N -0.721 5.721 13 C -0.238 4.238 14 H 0.079 0.921 15 C -0.075 4.075 16 N -0.970 5.970 17 Si 0.967 3.033 18 H -0.263 1.263 19 H -0.300 1.300 20 H -0.295 1.295 21 C -0.114 4.114 22 C -0.116 4.116 23 C -0.127 4.127 24 C -0.112 4.112 25 C 0.467 3.533 26 F -0.188 7.188 27 F -0.172 7.172 28 F -0.185 7.185 29 H 0.107 0.893 30 H 0.103 0.897 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.376 0.624 39 H 0.249 0.751 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.071 0.929 44 H 0.088 0.912 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.885 8.986 -21.676 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.126 4.126 3 C -0.205 4.205 4 C 0.313 3.687 5 O -0.445 6.445 6 N -0.329 5.329 7 C 0.056 3.944 8 H 0.106 0.894 9 C -0.216 4.216 10 C 0.058 3.942 11 H 0.104 0.896 12 N -0.359 5.359 13 C -0.370 4.370 14 H 0.097 0.903 15 C -0.267 4.267 16 N -0.620 5.620 17 Si 0.797 3.203 18 H -0.188 1.188 19 H -0.227 1.227 20 H -0.223 1.223 21 C -0.117 4.117 22 C -0.155 4.155 23 C -0.165 4.165 24 C -0.150 4.150 25 C 0.412 3.588 26 F -0.169 7.169 27 F -0.153 7.153 28 F -0.166 7.166 29 H 0.125 0.875 30 H 0.122 0.878 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.121 0.879 34 H 0.127 0.873 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.209 0.791 39 H 0.058 0.942 40 H 0.088 0.912 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.090 0.910 44 H 0.107 0.893 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.179 8.329 -21.755 23.667 hybrid contribution -0.652 -0.610 0.975 1.323 sum 3.526 7.719 -20.780 22.446 Atomic orbital electron populations 1.22078 0.87000 1.04605 1.07085 1.22140 1.02186 0.99720 0.88556 1.22080 1.02596 0.88724 1.07141 1.20161 0.79697 0.83864 0.84994 1.90795 1.39233 1.27485 1.86943 1.45244 1.52511 1.31673 1.03480 1.21189 0.97029 0.93523 0.82673 0.89392 1.24161 0.98493 0.99857 0.99060 1.21713 0.94445 0.94079 0.83951 0.89610 1.42554 1.07542 1.80977 1.04817 1.19738 0.88034 1.36840 0.92350 0.90268 1.25496 1.00708 1.03438 0.97072 1.69818 1.31858 1.55587 1.04783 0.85156 0.80395 0.76457 0.78260 1.18770 1.22724 1.22286 1.23263 0.96168 0.97083 0.95162 1.22463 0.95905 0.99313 0.97775 1.22777 0.96517 0.96985 1.00184 1.22595 0.96134 0.94069 1.02180 1.20154 0.75474 0.77398 0.85732 1.93178 1.88400 1.38559 1.96782 1.93176 1.88363 1.80489 1.53320 1.93171 1.30360 1.96340 1.96775 0.87482 0.87786 0.91870 0.91274 0.87930 0.87276 0.74482 0.91621 0.92061 0.79105 0.94213 0.91230 0.92006 0.89523 0.91021 0.89303 0.90475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 8.13 71.98 0.58 -1.14 16 2 C -0.12 -1.97 0.44 -52.93 -0.02 -2.00 16 3 C -0.15 -1.43 8.13 71.98 0.58 -0.84 16 4 C 0.53 12.32 6.25 87.66 0.55 12.87 16 5 O -0.57 -18.64 14.43 -3.02 -0.04 -18.68 16 6 N -0.68 -13.98 4.59 -441.15 -2.03 -16.01 16 7 C 0.16 4.42 4.12 45.28 0.19 4.61 16 8 H 0.09 2.69 7.46 -2.39 -0.02 2.67 16 9 C -0.17 -5.79 7.68 31.23 0.24 -5.55 16 10 C 0.17 5.90 4.27 45.28 0.19 6.10 16 11 H 0.09 2.80 8.10 -2.39 -0.02 2.78 16 12 N -0.72 -33.96 5.30 -321.55 -1.70 -35.66 16 13 C -0.24 -12.47 9.97 84.03 0.84 -11.64 16 14 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 15 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 16 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 17 Si 0.97 44.77 29.55 68.60 2.03 46.80 16 18 H -0.26 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 20 H -0.30 -13.73 7.11 99.48 0.71 -13.03 16 21 C -0.11 -3.23 0.92 -52.31 -0.05 -3.28 16 22 C -0.12 -3.53 7.15 30.88 0.22 -3.30 16 23 C -0.13 -2.97 8.08 31.23 0.25 -2.71 16 24 C -0.11 -2.57 7.62 30.89 0.24 -2.33 16 25 C 0.47 10.04 1.95 71.98 0.14 10.18 16 26 F -0.19 -4.97 15.88 44.97 0.71 -4.26 16 27 F -0.17 -3.09 16.28 44.97 0.73 -2.36 16 28 F -0.19 -4.69 15.88 44.97 0.71 -3.97 16 29 H 0.11 0.80 7.57 -2.39 -0.02 0.78 16 30 H 0.10 0.79 7.80 -2.38 -0.02 0.77 16 31 H 0.06 0.94 7.80 -2.38 -0.02 0.92 16 32 H 0.07 0.81 7.80 -2.39 -0.02 0.79 16 33 H 0.10 0.64 7.80 -2.39 -0.02 0.62 16 34 H 0.11 0.55 7.56 -2.39 -0.02 0.54 16 35 H 0.42 6.09 7.26 -92.71 -0.67 5.42 16 36 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.38 19.28 6.23 -92.71 -0.58 18.71 16 39 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 40 H 0.07 2.54 7.03 -2.39 -0.02 2.52 16 41 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 44 H 0.09 1.50 7.58 -2.39 -0.02 1.49 16 45 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 Total: -1.00 -69.21 371.49 4.90 -64.31 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: -0.22 Total: 30.23 kcal Atomic # 6 Polarization: -7.15 SS G_CDS: 4.42 Total: -2.73 kcal Atomic # 7 Polarization: -105.88 SS G_CDS: -3.45 Total: -109.33 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: -0.04 Total: -18.68 kcal Atomic # 9 Polarization: -12.75 SS G_CDS: 2.16 Total: -10.59 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -69.21 4.90 -64.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203640988.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.653 kcal (2) G-P(sol) polarization free energy of solvation -69.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -163.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds