Wall clock time and date at job start Tue Mar 31 2020 17:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46759 * 2 1 4 4 H 1.08999 * 109.47308 * 299.15631 * 3 2 1 5 5 C 1.53004 * 109.46703 * 179.15616 * 3 2 1 6 6 C 1.52996 * 109.47113 * 63.21100 * 5 3 2 7 7 F 1.39904 * 109.47379 * 53.59587 * 6 5 3 8 8 F 1.39897 * 109.47263 * 173.59475 * 6 5 3 9 9 F 1.39899 * 109.47114 * 293.59909 * 6 5 3 10 10 C 1.50699 * 109.46928 * 59.15974 * 3 2 1 11 11 O 1.21279 * 120.00203 * 35.73404 * 10 3 2 12 12 N 1.34782 * 119.99930 * 215.73336 * 10 3 2 13 13 C 1.47287 * 136.54245 * 356.24713 * 12 10 3 14 14 C 1.54079 * 87.60648 * 151.38886 * 13 12 10 15 15 H 1.08997 * 115.04533 * 141.63356 * 14 13 12 16 16 C 1.53069 * 111.39090 * 273.97446 * 14 13 12 17 17 C 1.52703 * 109.28045 * 142.29066 * 16 14 13 18 18 N 1.46547 * 108.48995 * 301.79155 * 17 16 14 19 19 C 1.36930 * 119.73564 * 236.40229 * 18 17 16 20 20 H 1.08001 * 119.99858 * 151.08412 * 19 18 17 21 21 C 1.38808 * 120.00356 * 331.09115 * 19 18 17 22 22 N 1.31621 * 120.00107 * 152.42591 * 21 19 18 23 23 Si 1.86802 * 119.99740 * 332.42347 * 21 19 18 24 24 H 1.48501 * 109.46714 * 92.13762 * 23 21 19 25 25 H 1.48495 * 109.47155 * 332.13752 * 23 21 19 26 26 H 1.48500 * 109.47224 * 212.13165 * 23 21 19 27 27 C 1.45698 * 120.52116 * 56.12450 * 18 17 16 28 28 C 1.46462 * 136.54637 * 176.25145 * 12 10 3 29 29 H 1.08998 * 111.44258 * 97.08907 * 28 12 10 30 30 H 1.09006 * 109.47077 * 183.74500 * 1 2 3 31 31 H 1.09002 * 109.46895 * 303.74095 * 1 2 3 32 32 H 1.08997 * 109.47380 * 63.74010 * 1 2 3 33 33 H 1.08995 * 109.46986 * 240.00856 * 2 1 3 34 34 H 1.08995 * 109.47390 * 120.00351 * 2 1 3 35 35 H 1.09004 * 109.46464 * 183.20834 * 5 3 2 36 36 H 1.08994 * 109.47200 * 303.20448 * 5 3 2 37 37 H 1.09000 * 113.53141 * 266.07315 * 13 12 10 38 38 H 1.09005 * 113.52929 * 36.70410 * 13 12 10 39 39 H 1.09005 * 109.51516 * 262.32199 * 16 14 13 40 40 H 1.09001 * 109.51745 * 22.48471 * 16 14 13 41 41 H 1.08999 * 109.62248 * 182.00961 * 17 16 14 42 42 H 1.08998 * 109.56186 * 61.53428 * 17 16 14 43 43 H 0.97001 * 119.99841 * 179.97438 * 22 21 19 44 44 H 1.08992 * 108.78795 * 81.16825 * 27 18 17 45 45 H 1.09005 * 108.78692 * 199.37541 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6890 1.9520 -0.8974 5 6 3.5698 1.4426 0.0212 6 6 4.0976 0.7862 -1.2560 7 9 3.5305 1.4126 -2.3710 8 9 5.4897 0.9160 -1.3061 9 9 3.7553 -0.5703 -1.2589 10 6 1.5206 2.1589 1.2199 11 8 1.4029 1.5623 2.2693 12 7 1.1869 3.4626 1.1448 13 6 1.2419 4.5232 0.1243 14 6 0.0245 5.1642 0.8178 15 1 0.0389 6.2532 0.8617 16 6 -1.2885 4.5685 0.3039 17 6 -2.2719 4.4388 1.4649 18 7 -1.6648 3.5928 2.4960 19 6 -2.3174 2.4667 2.9215 20 1 -1.7533 1.6212 3.2867 21 6 -3.7038 2.4118 2.8835 22 7 -4.3132 1.2522 2.7551 23 14 -4.7047 3.9835 3.0147 24 1 -4.9813 4.5092 1.6537 25 1 -3.9406 4.9937 3.7898 26 1 -5.9881 3.6970 3.7048 27 6 -0.3696 3.9372 3.0675 28 6 0.6058 4.4646 2.0411 29 1 1.3773 5.0771 2.5077 30 1 -0.3633 -1.0255 0.0671 31 1 -0.3633 0.5708 0.8546 32 1 -0.3634 0.4547 -0.9216 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9323 2.4690 0.0788 36 1 3.9212 0.8841 0.8888 37 1 2.1441 5.1325 0.1781 38 1 1.0310 4.1679 -0.8844 39 1 -1.7101 5.2213 -0.4605 40 1 -1.0993 3.5830 -0.1217 41 1 -3.1966 3.9820 1.1121 42 1 -2.4827 5.4258 1.8766 43 1 -5.2821 1.2138 2.7289 44 1 -0.5156 4.6963 3.8358 45 1 0.0566 3.0480 3.5324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001221953157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:07 Heat of formation + Delta-G solvation = -126.847726 kcal Electronic energy + Delta-G solvation = -31565.462003 eV Core-core repulsion = 26977.076909 eV Total energy + Delta-G solvation = -4588.385094 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.36184 -47.85579 -47.79699 -40.91811 -38.59063 -35.57860 -35.21564 -31.96917 -31.30364 -31.12587 -29.46235 -27.30755 -26.35354 -23.70077 -23.65890 -22.94385 -21.92963 -21.22970 -19.72166 -18.89389 -18.70669 -17.88695 -17.50057 -17.02169 -16.37165 -15.72036 -15.44451 -15.10097 -14.85435 -14.74726 -14.56048 -14.18810 -14.11383 -13.95548 -13.87329 -13.80392 -13.65848 -13.49462 -13.21597 -12.88895 -12.63896 -12.47050 -12.18975 -12.06798 -12.00473 -11.76607 -11.47300 -11.15367 -11.06255 -10.90228 -10.79659 -10.66416 -10.54869 -10.30613 -9.99034 -9.71101 -9.47510 -9.20736 -8.58021 -8.33725 -6.90746 -5.92308 -3.22229 2.45017 2.87588 2.99589 3.34989 3.51868 3.56509 3.58359 3.81143 3.82996 4.43576 4.50503 4.55841 4.58729 4.67053 4.94163 4.95943 5.06054 5.17875 5.21158 5.33064 5.39755 5.41302 5.51945 5.58587 5.68055 5.78650 5.79493 5.86252 5.96541 6.00638 6.19091 6.28532 6.32662 6.35619 6.43967 6.59787 6.71353 6.78286 6.84525 6.94166 8.01989 8.07614 8.42435 8.47038 9.05177 9.79943 10.14168 11.23363 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003928 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.649318 B = 7126.070682 C = 7811.322918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.123 4.123 3 C -0.103 4.103 4 H 0.097 0.903 5 C -0.155 4.155 6 C 0.457 3.543 7 F -0.182 7.182 8 F -0.185 7.185 9 F -0.175 7.175 10 C 0.558 3.442 11 O -0.517 6.517 12 N -0.632 5.632 13 C 0.093 3.907 14 C -0.112 4.112 15 H 0.095 0.905 16 C -0.116 4.116 17 C 0.133 3.867 18 N -0.593 5.593 19 C -0.256 4.256 20 H 0.083 0.917 21 C 0.029 3.971 22 N -0.897 5.897 23 Si 0.866 3.134 24 H -0.288 1.288 25 H -0.273 1.273 26 H -0.302 1.302 27 C 0.143 3.857 28 C 0.126 3.874 29 H 0.079 0.921 30 H 0.057 0.943 31 H 0.075 0.925 32 H 0.047 0.953 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.059 0.941 40 H 0.068 0.932 41 H 0.075 0.925 42 H 0.022 0.978 43 H 0.261 0.739 44 H 0.023 0.977 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.921 5.504 -10.223 20.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.125 4.125 4 H 0.115 0.885 5 C -0.194 4.194 6 C 0.402 3.598 7 F -0.164 7.164 8 F -0.167 7.167 9 F -0.157 7.157 10 C 0.346 3.654 11 O -0.392 6.392 12 N -0.369 5.369 13 C -0.030 4.030 14 C -0.132 4.132 15 H 0.113 0.887 16 C -0.155 4.155 17 C 0.007 3.993 18 N -0.316 5.316 19 C -0.385 4.385 20 H 0.101 0.899 21 C -0.170 4.170 22 N -0.539 5.539 23 Si 0.696 3.304 24 H -0.216 1.216 25 H -0.198 1.198 26 H -0.230 1.230 27 C 0.016 3.984 28 C 0.022 3.978 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.066 0.934 33 H 0.098 0.902 34 H 0.095 0.905 35 H 0.128 0.872 36 H 0.137 0.863 37 H 0.099 0.901 38 H 0.094 0.906 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.094 0.906 42 H 0.040 0.960 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.795 4.791 -9.634 19.946 hybrid contribution -0.506 0.894 -0.225 1.052 sum 16.289 5.685 -9.858 19.870 Atomic orbital electron populations 1.21777 0.93791 1.02661 1.02864 1.21826 0.98010 0.92558 1.03616 1.21331 0.92582 0.99636 0.98917 0.88452 1.22797 0.97265 1.04288 0.95050 1.20469 0.75391 0.77220 0.86674 1.93186 1.84729 1.82211 1.56229 1.93188 1.30880 1.95720 1.96887 1.93147 1.91324 1.34352 1.96861 1.19431 0.77244 0.79490 0.89197 1.90738 1.52899 1.64837 1.30744 1.49478 1.62627 1.07169 1.17583 1.23361 0.98230 0.87583 0.93832 1.22806 0.94999 0.99241 0.96113 0.88684 1.21770 0.94418 1.00419 0.98907 1.21060 0.95644 0.94026 0.88550 1.43775 1.18059 1.28136 1.41668 1.18876 0.89118 0.90891 1.39567 0.89933 1.25247 0.96306 0.95835 0.99599 1.69955 1.08928 1.24329 1.50727 0.87131 0.79714 0.85970 0.77623 1.21604 1.19828 1.23028 1.20286 0.86038 0.99588 0.92483 1.22339 0.94873 0.86853 0.93700 0.90320 0.92385 0.90564 0.93350 0.90193 0.90472 0.87187 0.86340 0.90108 0.90578 0.92249 0.91364 0.90636 0.96022 0.92925 0.95917 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.71 37.16 0.36 -2.22 16 2 C -0.12 -1.70 4.50 -26.73 -0.12 -1.82 16 3 C -0.10 -1.30 2.07 -91.77 -0.19 -1.49 16 4 H 0.10 1.14 7.02 -51.93 -0.36 0.77 16 5 C -0.16 -1.51 4.85 -26.73 -0.13 -1.64 16 6 C 0.46 4.54 3.08 37.16 0.11 4.65 16 7 F -0.18 -1.90 16.49 2.25 0.04 -1.86 16 8 F -0.19 -1.86 17.32 2.25 0.04 -1.82 16 9 F -0.18 -1.93 14.18 2.25 0.03 -1.89 16 10 C 0.56 9.09 5.86 -10.98 -0.06 9.02 16 11 O -0.52 -10.66 15.08 5.56 0.08 -10.57 16 12 N -0.63 -9.35 3.33 -187.73 -0.63 -9.98 16 13 C 0.09 1.00 7.60 -11.55 -0.09 0.91 16 14 C -0.11 -1.46 4.57 -90.31 -0.41 -1.87 16 15 H 0.10 1.00 8.14 -51.93 -0.42 0.57 16 16 C -0.12 -1.87 5.68 -26.85 -0.15 -2.02 16 17 C 0.13 2.78 4.23 -4.17 -0.02 2.76 16 18 N -0.59 -13.95 2.74 -175.16 -0.48 -14.43 16 19 C -0.26 -7.24 9.86 -15.06 -0.15 -7.39 16 20 H 0.08 2.61 8.01 -52.49 -0.42 2.19 16 21 C 0.03 0.85 5.02 -17.43 -0.09 0.76 16 22 N -0.90 -27.55 13.97 55.49 0.78 -26.77 16 23 Si 0.87 22.02 24.82 -169.99 -4.22 17.81 16 24 H -0.29 -7.01 6.64 56.52 0.38 -6.63 16 25 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 27 C 0.14 2.88 6.17 -5.43 -0.03 2.85 16 28 C 0.13 1.93 4.03 -77.70 -0.31 1.62 16 29 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 1.62 6.68 -51.93 -0.35 1.28 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.98 5.54 -51.93 -0.29 0.69 16 34 H 0.08 1.14 7.89 -51.93 -0.41 0.73 16 35 H 0.11 0.87 8.14 -51.93 -0.42 0.45 16 36 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 0.75 7.76 -51.93 -0.40 0.35 16 39 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.22 7.68 -51.93 -0.40 0.82 16 41 H 0.08 1.77 4.84 -51.93 -0.25 1.52 16 42 H 0.02 0.44 7.58 -51.93 -0.39 0.05 16 43 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.08 1.78 6.50 -51.93 -0.34 1.44 16 LS Contribution 357.10 15.07 5.38 5.38 Total: -1.00 -32.86 357.10 -6.84 -39.70 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -6.58 Total: 0.31 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.28 Total: 4.13 kcal Atomic # 7 Polarization: -50.85 SS G_CDS: -0.33 Total: -51.18 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.57 kcal Atomic # 9 Polarization: -5.68 SS G_CDS: 0.11 Total: -5.57 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.22 Total: 17.81 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.86 -6.84 -39.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221953157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.147 kcal (2) G-P(sol) polarization free energy of solvation -32.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds