Wall clock time and date at job start Tue Mar 31 2020 17:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46759 * 2 1 4 4 H 1.08999 * 109.47308 * 299.15631 * 3 2 1 5 5 C 1.53004 * 109.46703 * 179.15616 * 3 2 1 6 6 C 1.52996 * 109.47113 * 63.21100 * 5 3 2 7 7 F 1.39904 * 109.47379 * 53.59587 * 6 5 3 8 8 F 1.39897 * 109.47263 * 173.59475 * 6 5 3 9 9 F 1.39899 * 109.47114 * 293.59909 * 6 5 3 10 10 C 1.50699 * 109.46928 * 59.15974 * 3 2 1 11 11 O 1.21279 * 120.00203 * 35.73404 * 10 3 2 12 12 N 1.34782 * 119.99930 * 215.73336 * 10 3 2 13 13 C 1.47287 * 136.54245 * 356.24713 * 12 10 3 14 14 C 1.54079 * 87.60648 * 151.38886 * 13 12 10 15 15 H 1.08997 * 115.04533 * 141.63356 * 14 13 12 16 16 C 1.53069 * 111.39090 * 273.97446 * 14 13 12 17 17 C 1.52703 * 109.28045 * 142.29066 * 16 14 13 18 18 N 1.46547 * 108.48995 * 301.79155 * 17 16 14 19 19 C 1.36930 * 119.73564 * 236.40229 * 18 17 16 20 20 H 1.08001 * 119.99858 * 151.08412 * 19 18 17 21 21 C 1.38808 * 120.00356 * 331.09115 * 19 18 17 22 22 N 1.31621 * 120.00107 * 152.42591 * 21 19 18 23 23 Si 1.86802 * 119.99740 * 332.42347 * 21 19 18 24 24 H 1.48501 * 109.46714 * 92.13762 * 23 21 19 25 25 H 1.48495 * 109.47155 * 332.13752 * 23 21 19 26 26 H 1.48500 * 109.47224 * 212.13165 * 23 21 19 27 27 C 1.45698 * 120.52116 * 56.12450 * 18 17 16 28 28 C 1.46462 * 136.54637 * 176.25145 * 12 10 3 29 29 H 1.08998 * 111.44258 * 97.08907 * 28 12 10 30 30 H 1.09006 * 109.47077 * 183.74500 * 1 2 3 31 31 H 1.09002 * 109.46895 * 303.74095 * 1 2 3 32 32 H 1.08997 * 109.47380 * 63.74010 * 1 2 3 33 33 H 1.08995 * 109.46986 * 240.00856 * 2 1 3 34 34 H 1.08995 * 109.47390 * 120.00351 * 2 1 3 35 35 H 1.09004 * 109.46464 * 183.20834 * 5 3 2 36 36 H 1.08994 * 109.47200 * 303.20448 * 5 3 2 37 37 H 1.09000 * 113.53141 * 266.07315 * 13 12 10 38 38 H 1.09005 * 113.52929 * 36.70410 * 13 12 10 39 39 H 1.09005 * 109.51516 * 262.32199 * 16 14 13 40 40 H 1.09001 * 109.51745 * 22.48471 * 16 14 13 41 41 H 1.08999 * 109.62248 * 182.00961 * 17 16 14 42 42 H 1.08998 * 109.56186 * 61.53428 * 17 16 14 43 43 H 0.97001 * 119.99841 * 179.97438 * 22 21 19 44 44 H 1.08992 * 108.78795 * 81.16825 * 27 18 17 45 45 H 1.09005 * 108.78692 * 199.37541 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6890 1.9520 -0.8974 5 6 3.5698 1.4426 0.0212 6 6 4.0976 0.7862 -1.2560 7 9 3.5305 1.4126 -2.3710 8 9 5.4897 0.9160 -1.3061 9 9 3.7553 -0.5703 -1.2589 10 6 1.5206 2.1589 1.2199 11 8 1.4029 1.5623 2.2693 12 7 1.1869 3.4626 1.1448 13 6 1.2419 4.5232 0.1243 14 6 0.0245 5.1642 0.8178 15 1 0.0389 6.2532 0.8617 16 6 -1.2885 4.5685 0.3039 17 6 -2.2719 4.4388 1.4649 18 7 -1.6648 3.5928 2.4960 19 6 -2.3174 2.4667 2.9215 20 1 -1.7533 1.6212 3.2867 21 6 -3.7038 2.4118 2.8835 22 7 -4.3132 1.2522 2.7551 23 14 -4.7047 3.9835 3.0147 24 1 -4.9813 4.5092 1.6537 25 1 -3.9406 4.9937 3.7898 26 1 -5.9881 3.6970 3.7048 27 6 -0.3696 3.9372 3.0675 28 6 0.6058 4.4646 2.0411 29 1 1.3773 5.0771 2.5077 30 1 -0.3633 -1.0255 0.0671 31 1 -0.3633 0.5708 0.8546 32 1 -0.3634 0.4547 -0.9216 33 1 1.8933 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.9323 2.4690 0.0788 36 1 3.9212 0.8841 0.8888 37 1 2.1441 5.1325 0.1781 38 1 1.0310 4.1679 -0.8844 39 1 -1.7101 5.2213 -0.4605 40 1 -1.0993 3.5830 -0.1217 41 1 -3.1966 3.9820 1.1121 42 1 -2.4827 5.4258 1.8766 43 1 -5.2821 1.2138 2.7289 44 1 -0.5156 4.6963 3.8358 45 1 0.0566 3.0480 3.5324 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001221953157.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:06 Heat of formation + Delta-G solvation = -149.041774 kcal Electronic energy + Delta-G solvation = -31566.424409 eV Core-core repulsion = 26977.076909 eV Total energy + Delta-G solvation = -4589.347500 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -51.15572 -48.65800 -48.58218 -42.08976 -39.84561 -37.28733 -36.37709 -33.93785 -32.72556 -32.36631 -30.81921 -28.82765 -27.42720 -25.38832 -25.06052 -23.89622 -23.14687 -22.71229 -20.92774 -19.78808 -19.52187 -19.20199 -18.66825 -18.34384 -17.73944 -17.16092 -16.92384 -16.63290 -15.76926 -15.67965 -15.56252 -15.53081 -15.30470 -15.15270 -15.00646 -14.77212 -14.75641 -14.67563 -14.49459 -14.30092 -14.19280 -13.93878 -13.69444 -13.42783 -13.06098 -12.90792 -12.82903 -12.61203 -12.57994 -12.33189 -12.24596 -12.07291 -11.99042 -11.81186 -11.62372 -11.41330 -11.16765 -10.64499 -10.50086 -9.56583 -8.86576 -8.18129 -5.44286 1.29532 1.41329 1.52103 1.54646 1.73698 1.99487 2.42414 2.77923 2.97067 3.00624 3.04523 3.35137 3.44985 3.47615 3.60014 3.75714 3.88702 4.07506 4.13887 4.25621 4.33412 4.35366 4.38585 4.43439 4.53521 4.60302 4.63248 4.68283 4.74672 4.77146 4.87283 4.94289 4.97661 5.04556 5.08037 5.16951 5.22358 5.26738 5.34445 5.58431 5.91629 6.13689 6.90417 6.99315 7.26730 7.69497 8.02387 9.02495 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.018531 B = 0.003928 C = 0.003584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.649318 B = 7126.070682 C = 7811.322918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.116 4.116 3 C -0.094 4.094 4 H 0.115 0.885 5 C -0.147 4.147 6 C 0.463 3.537 7 F -0.181 7.181 8 F -0.183 7.183 9 F -0.184 7.184 10 C 0.548 3.452 11 O -0.579 6.579 12 N -0.642 5.642 13 C 0.106 3.894 14 C -0.104 4.104 15 H 0.141 0.859 16 C -0.110 4.110 17 C 0.124 3.876 18 N -0.605 5.605 19 C -0.247 4.247 20 H 0.022 0.978 21 C -0.029 4.029 22 N -0.951 5.951 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.264 1.264 26 H -0.310 1.310 27 C 0.140 3.860 28 C 0.116 3.884 29 H 0.118 0.882 30 H 0.053 0.947 31 H 0.020 0.980 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.061 0.939 35 H 0.139 0.861 36 H 0.117 0.883 37 H 0.129 0.871 38 H 0.091 0.909 39 H 0.096 0.904 40 H 0.041 0.959 41 H 0.043 0.957 42 H 0.041 0.959 43 H 0.261 0.739 44 H 0.030 0.970 45 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.932 9.703 -12.901 24.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.115 4.115 4 H 0.133 0.867 5 C -0.185 4.185 6 C 0.409 3.591 7 F -0.163 7.163 8 F -0.164 7.164 9 F -0.165 7.165 10 C 0.338 3.662 11 O -0.459 6.459 12 N -0.377 5.377 13 C -0.015 4.015 14 C -0.123 4.123 15 H 0.159 0.841 16 C -0.149 4.149 17 C 0.000 4.000 18 N -0.329 5.329 19 C -0.376 4.376 20 H 0.040 0.960 21 C -0.224 4.224 22 N -0.596 5.596 23 Si 0.772 3.228 24 H -0.191 1.191 25 H -0.189 1.189 26 H -0.239 1.239 27 C 0.015 3.985 28 C 0.012 3.988 29 H 0.136 0.864 30 H 0.072 0.928 31 H 0.039 0.961 32 H 0.079 0.921 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.146 0.854 38 H 0.109 0.891 39 H 0.115 0.885 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.058 0.942 43 H 0.070 0.930 44 H 0.048 0.952 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 18.842 9.070 -12.365 24.294 hybrid contribution -1.116 -0.486 0.649 1.379 sum 17.727 8.584 -11.716 22.917 Atomic orbital electron populations 1.21672 0.96374 1.01483 1.00825 1.21786 0.95446 0.94229 1.03931 1.21239 0.94687 0.97929 0.97692 0.86651 1.22753 0.94694 1.06117 0.94974 1.20376 0.75422 0.76752 0.86545 1.93189 1.84727 1.82118 1.56239 1.93196 1.30696 1.95669 1.96866 1.93129 1.91383 1.35139 1.96889 1.20058 0.76651 0.80064 0.89396 1.90717 1.55562 1.66351 1.33221 1.49697 1.61497 1.07344 1.19137 1.23627 0.98916 0.85715 0.93256 1.22822 0.93828 1.01356 0.94248 0.84141 1.21660 0.95277 1.00382 0.97553 1.21172 0.95816 0.93463 0.89558 1.43820 1.19047 1.27164 1.42895 1.18582 0.89180 0.91050 1.38825 0.96039 1.25887 0.97301 0.99259 0.99985 1.70100 1.09077 1.27060 1.53375 0.85879 0.77143 0.81268 0.78517 1.19056 1.18898 1.23911 1.20338 0.85598 0.98046 0.94552 1.22540 0.94931 0.87630 0.93736 0.86449 0.92772 0.96079 0.92084 0.87811 0.92046 0.84319 0.86456 0.85363 0.89075 0.88542 0.93989 0.93823 0.94151 0.93033 0.95188 0.94826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.25 9.71 71.98 0.70 -4.55 16 2 C -0.12 -3.30 4.50 30.60 0.14 -3.16 16 3 C -0.09 -2.27 2.07 -11.54 -0.02 -2.29 16 4 H 0.12 2.36 7.02 -2.39 -0.02 2.34 16 5 C -0.15 -2.49 4.85 30.59 0.15 -2.35 16 6 C 0.46 7.95 3.08 71.98 0.22 8.17 16 7 F -0.18 -3.15 16.49 44.97 0.74 -2.41 16 8 F -0.18 -3.15 17.32 44.97 0.78 -2.37 16 9 F -0.18 -3.71 14.18 44.97 0.64 -3.07 16 10 C 0.55 17.99 5.86 87.66 0.51 18.50 16 11 O -0.58 -25.72 15.08 -3.03 -0.05 -25.76 16 12 N -0.64 -17.60 3.33 -866.25 -2.89 -20.49 16 13 C 0.11 1.66 7.60 81.08 0.62 2.27 16 14 C -0.10 -2.13 4.57 -10.59 -0.05 -2.18 16 15 H 0.14 1.80 8.14 -2.39 -0.02 1.78 16 16 C -0.11 -3.17 5.68 30.52 0.17 -3.00 16 17 C 0.12 5.02 4.23 86.27 0.36 5.38 16 18 N -0.61 -29.22 2.74 -708.10 -1.94 -31.16 16 19 C -0.25 -14.96 9.86 84.03 0.83 -14.13 16 20 H 0.02 1.54 8.01 -2.91 -0.02 1.52 16 21 C -0.03 -1.77 5.02 84.86 0.43 -1.34 16 22 N -0.95 -62.09 13.97 21.65 0.30 -61.79 16 23 Si 0.94 46.94 24.82 68.60 1.70 48.64 16 24 H -0.26 -12.04 6.64 99.48 0.66 -11.38 16 25 H -0.26 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.31 -15.75 7.11 99.48 0.71 -15.04 16 27 C 0.14 5.78 6.17 85.91 0.53 6.31 16 28 C 0.12 3.21 4.03 38.68 0.16 3.37 16 29 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 31 H 0.02 0.96 6.68 -2.39 -0.02 0.95 16 32 H 0.06 1.96 8.14 -2.39 -0.02 1.95 16 33 H 0.10 2.45 5.54 -2.39 -0.01 2.44 16 34 H 0.06 1.93 7.89 -2.39 -0.02 1.91 16 35 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.12 2.09 8.14 -2.39 -0.02 2.07 16 37 H 0.13 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.09 1.24 7.76 -2.38 -0.02 1.22 16 39 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 40 H 0.04 1.43 7.68 -2.39 -0.02 1.41 16 41 H 0.04 2.02 4.84 -2.39 -0.01 2.01 16 42 H 0.04 1.50 7.58 -2.39 -0.02 1.48 16 43 H 0.26 16.06 8.31 -92.71 -0.77 15.29 16 44 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.03 1.66 6.50 -2.38 -0.02 1.64 16 Total: -1.00 -82.65 357.10 4.99 -77.66 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: 0.96 Total: 9.75 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 4.74 Total: 11.00 kcal Atomic # 7 Polarization: -108.91 SS G_CDS: -4.53 Total: -113.44 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -0.05 Total: -25.76 kcal Atomic # 9 Polarization: -10.01 SS G_CDS: 2.16 Total: -7.85 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.70 Total: 48.64 kcal Total: -82.65 4.99 -77.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001221953157.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.382 kcal (2) G-P(sol) polarization free energy of solvation -82.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds