Wall clock time and date at job start Tue Mar 31 2020 17:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 H 1.08998 * 109.46803 * 304.73121 * 3 2 1 5 5 C 1.50700 * 109.47001 * 184.73133 * 3 2 1 6 6 H 1.07994 * 120.00408 * 243.63232 * 5 3 2 7 7 C 1.37887 * 119.99962 * 63.63582 * 5 3 2 8 8 N 1.31520 * 119.99629 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 120.00242 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47288 * 89.99473 * 9 7 5 11 11 H 1.48499 * 109.47414 * 209.99545 * 9 7 5 12 12 H 1.48506 * 109.47272 * 329.99854 * 9 7 5 13 13 N 1.46898 * 109.46884 * 64.73710 * 3 2 1 14 14 C 1.46908 * 110.99606 * 205.11420 * 13 3 2 15 15 H 1.08995 * 109.46861 * 29.53082 * 14 13 3 16 16 C 1.53002 * 109.46884 * 149.53034 * 14 13 3 17 17 C 1.50702 * 109.46985 * 294.71314 * 16 14 13 18 18 O 1.20824 * 120.00067 * 355.00189 * 17 16 14 19 19 O 1.34234 * 119.99616 * 175.00384 * 17 16 14 20 20 C 1.45200 * 116.99653 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46991 * 179.97438 * 20 19 17 22 22 C 1.38233 * 119.99937 * 269.72735 * 21 20 19 23 23 C 1.38238 * 119.99675 * 179.76263 * 22 21 20 24 24 C 1.38229 * 120.00134 * 0.51084 * 23 22 21 25 25 C 1.38239 * 120.00080 * 359.74138 * 24 23 22 26 26 C 1.38235 * 119.99711 * 90.00029 * 21 20 19 27 27 C 1.50696 * 109.47173 * 269.53169 * 14 13 3 28 28 N 1.34777 * 120.00268 * 153.06094 * 27 14 13 29 29 O 1.21283 * 120.00183 * 333.05592 * 27 14 13 30 30 H 1.09000 * 109.47377 * 298.41883 * 1 2 3 31 31 H 1.09000 * 109.47671 * 58.42144 * 1 2 3 32 32 H 1.08999 * 109.47479 * 178.42494 * 1 2 3 33 33 H 1.09003 * 109.46977 * 239.99848 * 2 1 3 34 34 H 1.09008 * 109.47320 * 120.00122 * 2 1 3 35 35 H 0.96995 * 119.99749 * 180.02562 * 8 7 5 36 36 H 1.00900 * 111.00555 * 81.16455 * 13 3 2 37 37 H 1.08994 * 109.47205 * 54.71424 * 16 14 13 38 38 H 1.08999 * 109.46961 * 174.71551 * 16 14 13 39 39 H 1.08994 * 109.47325 * 299.99530 * 20 19 17 40 40 H 1.09002 * 109.47087 * 60.00326 * 20 19 17 41 41 H 1.08001 * 120.00140 * 0.02562 * 22 21 20 42 42 H 1.08007 * 119.99872 * 180.23058 * 23 22 21 43 43 H 1.08008 * 120.00221 * 179.72426 * 24 23 22 44 44 H 1.08003 * 120.00090 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.00062 * 0.02562 * 26 21 20 46 46 H 0.96996 * 119.99606 * 359.97438 * 28 27 14 47 47 H 0.96993 * 120.00133 * 180.02562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6090 1.9801 -0.8446 5 6 3.5424 1.4441 -0.1172 6 1 4.1464 1.8368 0.6873 7 6 4.1459 0.9441 -1.2517 8 7 3.4103 0.4654 -2.2312 9 14 6.0081 0.9467 -1.3973 10 1 6.5492 -0.3236 -0.8504 11 1 6.3928 1.0741 -2.8260 12 1 6.5631 2.0915 -0.6312 13 7 1.6459 2.1011 1.2525 14 6 1.5652 3.5576 1.0786 15 1 1.2959 3.7860 0.0474 16 6 0.5022 4.1257 2.0211 17 6 -0.8544 3.6065 1.6195 18 8 -0.9727 2.9325 0.6237 19 8 -1.9311 3.8930 2.3680 20 6 -3.2054 3.3592 1.9213 21 6 -4.2900 3.7804 2.8790 22 6 -4.6038 2.9814 3.9625 23 6 -5.5954 3.3702 4.8438 24 6 -6.2803 4.5527 4.6356 25 6 -5.9700 5.3492 3.5491 26 6 -4.9749 4.9629 2.6708 27 6 2.9017 4.1764 1.3975 28 7 3.2575 5.3439 0.8258 29 8 3.6573 3.6239 2.1687 30 1 -0.3634 0.4891 0.9038 31 1 -0.3634 0.5381 -0.8755 32 1 -0.3634 -1.0272 -0.0282 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8349 0.1134 -3.0291 36 1 2.2776 1.8609 2.0018 37 1 0.7211 3.8175 3.0434 38 1 0.5072 5.2140 1.9607 39 1 -3.4307 3.7416 0.9258 40 1 -3.1522 2.2709 1.8890 41 1 -4.0715 2.0555 4.1230 42 1 -5.8381 2.7478 5.6925 43 1 -7.0581 4.8543 5.3217 44 1 -6.5055 6.2729 3.3862 45 1 -4.7330 5.5847 1.8216 46 1 2.6534 5.7857 0.2087 47 1 4.1179 5.7420 1.0308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255154422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:14 Heat of formation + Delta-G solvation = -105.900700 kcal Electronic energy + Delta-G solvation = -29091.125920 eV Core-core repulsion = 25045.505898 eV Total energy + Delta-G solvation = -4045.620022 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.37043 -39.44616 -38.99076 -36.39531 -35.58156 -33.48258 -32.87976 -32.32669 -31.40998 -31.16257 -29.49994 -26.94232 -25.91921 -24.32649 -22.84191 -22.45849 -21.63284 -20.82790 -19.59168 -19.48652 -17.76458 -17.25869 -16.88449 -16.67920 -16.39432 -16.08668 -15.77561 -15.19772 -15.10080 -14.73263 -14.23247 -14.03842 -13.67799 -13.58833 -13.30595 -13.18195 -13.08031 -12.81123 -12.67982 -12.27740 -12.22829 -11.60618 -11.35257 -11.32575 -11.22319 -11.05756 -10.93082 -10.87149 -10.56739 -10.47635 -10.15659 -10.09826 -9.70006 -9.50803 -9.34215 -9.25898 -9.17617 -9.09050 -8.86380 -8.30547 -7.37593 -5.92871 -4.02612 0.95194 1.14811 2.63251 2.78992 3.22278 3.32300 3.38902 3.44699 3.63752 4.02759 4.47590 4.48730 4.57516 4.73632 4.85836 4.90156 5.03913 5.10437 5.21792 5.26429 5.34977 5.36279 5.40616 5.56462 5.64511 5.72244 5.78289 5.89501 6.09359 6.16998 6.23650 6.33785 6.54197 6.65700 6.66800 6.71951 6.86027 7.14721 7.23522 7.33952 7.47064 7.66049 7.74015 7.89403 8.08888 8.16571 8.19885 8.32836 8.70754 8.73937 9.12501 9.64973 11.09139 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002716 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.917969 B =10304.984993 C =11181.571740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.100 4.100 3 C 0.219 3.781 4 H 0.037 0.963 5 C -0.546 4.546 6 H 0.066 0.934 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.276 1.276 13 N -0.660 5.660 14 C 0.090 3.910 15 H 0.101 0.899 16 C -0.094 4.094 17 C 0.464 3.536 18 O -0.469 6.469 19 O -0.362 6.362 20 C 0.109 3.891 21 C -0.092 4.092 22 C -0.095 4.095 23 C -0.124 4.124 24 C -0.114 4.114 25 C -0.125 4.125 26 C -0.097 4.097 27 C 0.507 3.493 28 N -0.859 5.859 29 O -0.534 6.534 30 H 0.048 0.952 31 H 0.039 0.961 32 H 0.017 0.983 33 H 0.082 0.918 34 H 0.028 0.972 35 H 0.259 0.741 36 H 0.342 0.658 37 H 0.106 0.894 38 H 0.099 0.901 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.126 0.874 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.123 0.877 45 H 0.124 0.876 46 H 0.397 0.603 47 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.016 12.059 9.987 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.139 4.139 3 C 0.112 3.888 4 H 0.055 0.945 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.135 4.135 8 N -0.526 5.526 9 Si 0.714 3.286 10 H -0.207 1.207 11 H -0.215 1.215 12 H -0.201 1.201 13 N -0.291 5.291 14 C -0.026 4.026 15 H 0.119 0.881 16 C -0.133 4.133 17 C 0.304 3.696 18 O -0.352 6.352 19 O -0.281 6.281 20 C 0.035 3.965 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.142 4.142 24 C -0.132 4.132 25 C -0.143 4.143 26 C -0.115 4.115 27 C 0.290 3.710 28 N -0.422 5.422 29 O -0.409 6.409 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.036 0.964 33 H 0.100 0.900 34 H 0.047 0.953 35 H 0.069 0.931 36 H 0.163 0.837 37 H 0.124 0.876 38 H 0.117 0.883 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.144 0.856 42 H 0.142 0.858 43 H 0.140 0.860 44 H 0.141 0.859 45 H 0.142 0.858 46 H 0.225 0.775 47 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -17.390 11.101 9.897 22.882 hybrid contribution 2.107 0.484 -0.626 2.250 sum -15.283 11.585 9.271 21.302 Atomic orbital electron populations 1.21621 0.98425 0.97541 1.00987 1.21416 0.92489 0.98985 1.01024 1.19230 0.92733 0.91349 0.85511 0.94476 1.22118 0.92815 1.40785 1.02774 0.91635 1.24929 0.97611 0.95151 0.95843 1.69930 1.34667 1.41125 1.06844 0.86702 0.86631 0.78491 0.76801 1.20723 1.21462 1.20122 1.61110 1.55520 1.01446 1.11055 1.21330 0.88978 0.92412 0.99845 0.88138 1.21310 0.88245 1.01009 1.02759 1.23394 0.85949 0.78435 0.81784 1.90751 1.85430 1.33627 1.25409 1.86550 1.16339 1.70991 1.54175 1.21706 0.79276 0.99388 0.96104 1.19609 0.96834 0.95869 0.96854 1.21160 0.96952 0.99723 0.93447 1.21171 0.96535 0.97016 0.99474 1.21219 0.99560 0.94838 0.97618 1.21151 0.98044 0.99966 0.95165 1.21110 0.95597 0.95379 0.99407 1.21626 0.90238 0.79873 0.79222 1.43958 1.22898 1.25267 1.50110 1.90687 1.53656 1.60702 1.35894 0.93269 0.94195 0.96390 0.89960 0.95283 0.93103 0.83736 0.87594 0.88286 0.90491 0.90173 0.85594 0.85801 0.86023 0.85877 0.85793 0.77517 0.77676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.56 37.15 0.36 -2.45 16 2 C -0.10 -2.49 5.47 -26.73 -0.15 -2.64 16 3 C 0.22 5.46 1.90 -68.87 -0.13 5.33 16 4 H 0.04 1.03 7.38 -51.93 -0.38 0.64 16 5 C -0.55 -14.99 7.83 -34.44 -0.27 -15.26 16 6 H 0.07 1.88 6.16 -52.49 -0.32 1.56 16 7 C 0.07 1.87 5.30 -17.81 -0.09 1.78 16 8 N -0.89 -25.55 11.57 55.43 0.64 -24.91 16 9 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 10 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 N -0.66 -13.87 4.81 -102.17 -0.49 -14.36 16 14 C 0.09 1.57 1.96 -68.86 -0.14 1.44 16 15 H 0.10 1.84 7.05 -51.93 -0.37 1.47 16 16 C -0.09 -1.28 5.47 -27.88 -0.15 -1.43 16 17 C 0.46 6.96 7.78 36.01 0.28 7.24 16 18 O -0.47 -8.50 14.24 -18.75 -0.27 -8.76 16 19 O -0.36 -4.86 10.20 -39.27 -0.40 -5.26 16 20 C 0.11 1.28 5.59 36.01 0.20 1.49 16 21 C -0.09 -0.96 5.52 -104.62 -0.58 -1.54 16 22 C -0.09 -0.92 9.70 -39.58 -0.38 -1.31 16 23 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 24 C -0.11 -0.88 10.05 -39.58 -0.40 -1.28 16 25 C -0.13 -1.00 10.05 -39.58 -0.40 -1.40 16 26 C -0.10 -0.89 9.70 -39.58 -0.38 -1.28 16 27 C 0.51 9.04 6.42 -10.99 -0.07 8.97 16 28 N -0.86 -11.42 8.87 31.22 0.28 -11.14 16 29 O -0.53 -11.67 15.30 5.55 0.09 -11.58 16 30 H 0.05 1.05 7.04 -51.93 -0.37 0.68 16 31 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 2.26 6.27 -51.93 -0.33 1.94 16 34 H 0.03 0.71 8.14 -51.92 -0.42 0.29 16 35 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.34 7.67 7.10 -39.29 -0.28 7.39 16 37 H 0.11 1.41 8.14 -51.93 -0.42 0.98 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 39 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 40 H 0.08 0.98 8.08 -51.93 -0.42 0.56 16 41 H 0.13 1.13 8.06 -52.49 -0.42 0.70 16 42 H 0.12 0.78 8.06 -52.48 -0.42 0.35 16 43 H 0.12 0.66 8.06 -52.48 -0.42 0.24 16 44 H 0.12 0.71 8.06 -52.48 -0.42 0.29 16 45 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 46 H 0.40 4.03 8.83 -40.82 -0.36 3.66 16 47 H 0.39 4.79 8.93 -40.82 -0.36 4.43 16 LS Contribution 392.44 15.07 5.91 5.91 Total: -1.00 -33.76 392.44 -8.93 -42.69 By element: Atomic # 1 Polarization: 21.13 SS G_CDS: -6.97 Total: 14.16 kcal Atomic # 6 Polarization: -1.09 SS G_CDS: -2.70 Total: -3.79 kcal Atomic # 7 Polarization: -50.84 SS G_CDS: 0.43 Total: -50.41 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -0.58 Total: -25.60 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.76 -8.93 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.209 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds