Wall clock time and date at job start Tue Mar 31 2020 17:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.47192 * 2 1 4 4 H 1.08998 * 109.46803 * 304.73121 * 3 2 1 5 5 C 1.50700 * 109.47001 * 184.73133 * 3 2 1 6 6 H 1.07994 * 120.00408 * 243.63232 * 5 3 2 7 7 C 1.37887 * 119.99962 * 63.63582 * 5 3 2 8 8 N 1.31520 * 119.99629 * 359.97438 * 7 5 3 9 9 Si 1.86790 * 120.00242 * 179.97438 * 7 5 3 10 10 H 1.48505 * 109.47288 * 89.99473 * 9 7 5 11 11 H 1.48499 * 109.47414 * 209.99545 * 9 7 5 12 12 H 1.48506 * 109.47272 * 329.99854 * 9 7 5 13 13 N 1.46898 * 109.46884 * 64.73710 * 3 2 1 14 14 C 1.46908 * 110.99606 * 205.11420 * 13 3 2 15 15 H 1.08995 * 109.46861 * 29.53082 * 14 13 3 16 16 C 1.53002 * 109.46884 * 149.53034 * 14 13 3 17 17 C 1.50702 * 109.46985 * 294.71314 * 16 14 13 18 18 O 1.20824 * 120.00067 * 355.00189 * 17 16 14 19 19 O 1.34234 * 119.99616 * 175.00384 * 17 16 14 20 20 C 1.45200 * 116.99653 * 180.02562 * 19 17 16 21 21 C 1.50701 * 109.46991 * 179.97438 * 20 19 17 22 22 C 1.38233 * 119.99937 * 269.72735 * 21 20 19 23 23 C 1.38238 * 119.99675 * 179.76263 * 22 21 20 24 24 C 1.38229 * 120.00134 * 0.51084 * 23 22 21 25 25 C 1.38239 * 120.00080 * 359.74138 * 24 23 22 26 26 C 1.38235 * 119.99711 * 90.00029 * 21 20 19 27 27 C 1.50696 * 109.47173 * 269.53169 * 14 13 3 28 28 N 1.34777 * 120.00268 * 153.06094 * 27 14 13 29 29 O 1.21283 * 120.00183 * 333.05592 * 27 14 13 30 30 H 1.09000 * 109.47377 * 298.41883 * 1 2 3 31 31 H 1.09000 * 109.47671 * 58.42144 * 1 2 3 32 32 H 1.08999 * 109.47479 * 178.42494 * 1 2 3 33 33 H 1.09003 * 109.46977 * 239.99848 * 2 1 3 34 34 H 1.09008 * 109.47320 * 120.00122 * 2 1 3 35 35 H 0.96995 * 119.99749 * 180.02562 * 8 7 5 36 36 H 1.00900 * 111.00555 * 81.16455 * 13 3 2 37 37 H 1.08994 * 109.47205 * 54.71424 * 16 14 13 38 38 H 1.08999 * 109.46961 * 174.71551 * 16 14 13 39 39 H 1.08994 * 109.47325 * 299.99530 * 20 19 17 40 40 H 1.09002 * 109.47087 * 60.00326 * 20 19 17 41 41 H 1.08001 * 120.00140 * 0.02562 * 22 21 20 42 42 H 1.08007 * 119.99872 * 180.23058 * 23 22 21 43 43 H 1.08008 * 120.00221 * 179.72426 * 24 23 22 44 44 H 1.08003 * 120.00090 * 179.97438 * 25 24 23 45 45 H 1.07995 * 120.00062 * 0.02562 * 26 21 20 46 46 H 0.96996 * 119.99606 * 359.97438 * 28 27 14 47 47 H 0.96993 * 120.00133 * 180.02562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6090 1.9801 -0.8446 5 6 3.5424 1.4441 -0.1172 6 1 4.1464 1.8368 0.6873 7 6 4.1459 0.9441 -1.2517 8 7 3.4103 0.4654 -2.2312 9 14 6.0081 0.9467 -1.3973 10 1 6.5492 -0.3236 -0.8504 11 1 6.3928 1.0741 -2.8260 12 1 6.5631 2.0915 -0.6312 13 7 1.6459 2.1011 1.2525 14 6 1.5652 3.5576 1.0786 15 1 1.2959 3.7860 0.0474 16 6 0.5022 4.1257 2.0211 17 6 -0.8544 3.6065 1.6195 18 8 -0.9727 2.9325 0.6237 19 8 -1.9311 3.8930 2.3680 20 6 -3.2054 3.3592 1.9213 21 6 -4.2900 3.7804 2.8790 22 6 -4.6038 2.9814 3.9625 23 6 -5.5954 3.3702 4.8438 24 6 -6.2803 4.5527 4.6356 25 6 -5.9700 5.3492 3.5491 26 6 -4.9749 4.9629 2.6708 27 6 2.9017 4.1764 1.3975 28 7 3.2575 5.3439 0.8258 29 8 3.6573 3.6239 2.1687 30 1 -0.3634 0.4891 0.9038 31 1 -0.3634 0.5381 -0.8755 32 1 -0.3634 -1.0272 -0.0282 33 1 1.8932 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.8349 0.1134 -3.0291 36 1 2.2776 1.8609 2.0018 37 1 0.7211 3.8175 3.0434 38 1 0.5072 5.2140 1.9607 39 1 -3.4307 3.7416 0.9258 40 1 -3.1522 2.2709 1.8890 41 1 -4.0715 2.0555 4.1230 42 1 -5.8381 2.7478 5.6925 43 1 -7.0581 4.8543 5.3217 44 1 -6.5055 6.2729 3.3862 45 1 -4.7330 5.5847 1.8216 46 1 2.6534 5.7857 0.2087 47 1 4.1179 5.7420 1.0308 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255154422.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:13 Heat of formation + Delta-G solvation = -128.765138 kcal Electronic energy + Delta-G solvation = -29092.117397 eV Core-core repulsion = 25045.505898 eV Total energy + Delta-G solvation = -4046.611498 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.54912 -40.63520 -39.93002 -37.77814 -37.16373 -35.01765 -34.38661 -33.43195 -33.03544 -31.79666 -31.05006 -28.33265 -27.37891 -25.77636 -24.37142 -23.48310 -22.44510 -21.93236 -21.47122 -20.91918 -19.17309 -18.48367 -18.10932 -18.00873 -17.53452 -17.37199 -16.92992 -16.74157 -16.04987 -15.95762 -15.60247 -15.49187 -15.22462 -14.67763 -14.54272 -14.44056 -14.25235 -14.09782 -13.86832 -13.61321 -13.30624 -13.17639 -13.12691 -12.99102 -12.71086 -12.55356 -12.37835 -12.11555 -12.02497 -11.99021 -11.58853 -11.51078 -11.43220 -11.32875 -11.13299 -10.80641 -10.52352 -10.45483 -9.82245 -9.78150 -9.16543 -8.05444 -6.23216 0.24992 0.50263 1.32961 1.35801 1.45223 1.45334 1.62756 1.96266 2.39966 2.74303 2.96977 3.16342 3.46824 3.68435 3.85908 3.91295 4.03750 4.15114 4.26891 4.28327 4.30159 4.34142 4.52794 4.58182 4.63807 4.66047 4.74614 4.76684 4.82375 4.97000 5.04757 5.15850 5.23762 5.42739 5.51527 5.55873 5.60095 5.61429 5.64372 5.66047 5.80745 5.96059 6.08947 6.09583 6.18097 6.31093 6.54551 6.80505 7.00273 7.02620 7.43421 7.48401 8.93270 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.019096 B = 0.002716 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.917969 B =10304.984993 C =11181.571740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.097 4.097 3 C 0.232 3.768 4 H 0.007 0.993 5 C -0.551 4.551 6 H 0.053 0.947 7 C 0.022 3.978 8 N -0.911 5.911 9 Si 0.942 3.058 10 H -0.280 1.280 11 H -0.281 1.281 12 H -0.279 1.279 13 N -0.655 5.655 14 C 0.089 3.911 15 H 0.091 0.909 16 C -0.086 4.086 17 C 0.468 3.532 18 O -0.506 6.506 19 O -0.358 6.358 20 C 0.109 3.891 21 C -0.111 4.111 22 C -0.111 4.111 23 C -0.130 4.130 24 C -0.114 4.114 25 C -0.128 4.128 26 C -0.107 4.107 27 C 0.505 3.495 28 N -0.837 5.837 29 O -0.578 6.578 30 H 0.054 0.946 31 H 0.026 0.974 32 H 0.036 0.964 33 H 0.052 0.948 34 H 0.024 0.976 35 H 0.260 0.740 36 H 0.335 0.665 37 H 0.114 0.886 38 H 0.142 0.858 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.125 0.875 42 H 0.143 0.857 43 H 0.148 0.852 44 H 0.147 0.853 45 H 0.133 0.867 46 H 0.415 0.585 47 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.052 13.836 11.170 25.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C 0.124 3.876 4 H 0.025 0.975 5 C -0.590 4.590 6 H 0.071 0.929 7 C -0.178 4.178 8 N -0.550 5.550 9 Si 0.769 3.231 10 H -0.206 1.206 11 H -0.206 1.206 12 H -0.204 1.204 13 N -0.285 5.285 14 C -0.026 4.026 15 H 0.109 0.891 16 C -0.124 4.124 17 C 0.311 3.689 18 O -0.392 6.392 19 O -0.276 6.276 20 C 0.036 3.964 21 C -0.111 4.111 22 C -0.130 4.130 23 C -0.147 4.147 24 C -0.132 4.132 25 C -0.146 4.146 26 C -0.125 4.125 27 C 0.289 3.711 28 N -0.400 5.400 29 O -0.457 6.457 30 H 0.073 0.927 31 H 0.046 0.954 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.069 0.931 36 H 0.154 0.846 37 H 0.132 0.868 38 H 0.160 0.840 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.143 0.857 42 H 0.161 0.839 43 H 0.166 0.834 44 H 0.165 0.835 45 H 0.151 0.849 46 H 0.246 0.754 47 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.449 12.939 11.070 25.107 hybrid contribution 2.340 0.012 -0.961 2.530 sum -16.109 12.951 10.109 23.010 Atomic orbital electron populations 1.21409 0.96131 0.98572 1.00582 1.21297 0.94429 0.98610 0.99254 1.18899 0.91179 0.91367 0.86165 0.97491 1.22290 0.94104 1.40325 1.02285 0.92911 1.25579 1.01294 0.95113 0.95765 1.70039 1.36037 1.41741 1.07192 0.85816 0.82197 0.78150 0.76937 1.20584 1.20610 1.20408 1.61022 1.54704 1.03872 1.08893 1.21378 0.90283 0.90447 1.00495 0.89062 1.21280 0.86119 1.03250 1.01761 1.23603 0.86658 0.77540 0.81140 1.90747 1.86030 1.35407 1.27046 1.86544 1.16672 1.70697 1.53701 1.21794 0.78939 0.98820 0.96871 1.19600 0.97128 0.97047 0.97320 1.21306 0.97852 0.99916 0.93881 1.21459 0.95986 0.97636 0.99666 1.21602 0.99613 0.94244 0.97753 1.21486 0.97533 1.00832 0.94720 1.21311 0.95953 0.95090 1.00152 1.21586 0.89846 0.80685 0.79005 1.43723 1.23514 1.23755 1.49058 1.90672 1.54679 1.62246 1.38097 0.92743 0.95439 0.94514 0.92895 0.95691 0.93063 0.84563 0.86763 0.84049 0.90271 0.91175 0.85697 0.83889 0.83397 0.83486 0.84901 0.75429 0.76551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.83 9.56 71.98 0.69 -4.15 16 2 C -0.10 -4.92 5.47 30.59 0.17 -4.76 16 3 C 0.23 11.87 1.90 44.17 0.08 11.95 16 4 H 0.01 0.41 7.38 -2.39 -0.02 0.39 16 5 C -0.55 -30.78 7.83 25.60 0.20 -30.58 16 6 H 0.05 3.07 6.16 -2.91 -0.02 3.05 16 7 C 0.02 1.26 5.30 84.66 0.45 1.71 16 8 N -0.91 -53.36 11.57 21.45 0.25 -53.11 16 9 Si 0.94 45.64 29.54 68.60 2.03 47.67 16 10 H -0.28 -13.43 7.11 99.48 0.71 -12.73 16 11 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 12 H -0.28 -13.54 7.11 99.48 0.71 -12.83 16 13 N -0.65 -27.87 4.81 -477.16 -2.29 -30.16 16 14 C 0.09 3.08 1.96 44.17 0.09 3.16 16 15 H 0.09 3.35 7.05 -2.39 -0.02 3.33 16 16 C -0.09 -2.19 5.47 29.85 0.16 -2.03 16 17 C 0.47 13.72 7.78 71.24 0.55 14.28 16 18 O -0.51 -18.47 14.24 21.97 0.31 -18.16 16 19 O -0.36 -9.35 10.20 -51.46 -0.53 -9.87 16 20 C 0.11 2.58 5.59 71.24 0.40 2.98 16 21 C -0.11 -2.27 5.52 -19.87 -0.11 -2.38 16 22 C -0.11 -2.11 9.70 22.27 0.22 -1.89 16 23 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 24 C -0.11 -1.47 10.05 22.27 0.22 -1.24 16 25 C -0.13 -1.74 10.05 22.27 0.22 -1.52 16 26 C -0.11 -1.83 9.70 22.27 0.22 -1.61 16 27 C 0.51 17.61 6.42 87.66 0.56 18.17 16 28 N -0.84 -20.74 8.87 -173.53 -1.54 -22.28 16 29 O -0.58 -25.15 15.30 -3.04 -0.05 -25.20 16 30 H 0.05 2.33 7.04 -2.39 -0.02 2.31 16 31 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.05 2.99 6.27 -2.39 -0.01 2.97 16 34 H 0.02 1.24 8.14 -2.38 -0.02 1.22 16 35 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 36 H 0.34 15.24 7.10 -89.69 -0.64 14.61 16 37 H 0.11 2.83 8.14 -2.39 -0.02 2.81 16 38 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 39 H 0.08 1.79 8.08 -2.39 -0.02 1.78 16 40 H 0.07 1.77 8.08 -2.39 -0.02 1.75 16 41 H 0.13 2.25 8.06 -2.91 -0.02 2.23 16 42 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 43 H 0.15 1.08 8.06 -2.91 -0.02 1.05 16 44 H 0.15 1.23 8.06 -2.91 -0.02 1.21 16 45 H 0.13 1.91 8.06 -2.91 -0.02 1.89 16 46 H 0.41 7.46 8.83 -92.71 -0.82 6.64 16 47 H 0.40 9.02 8.93 -92.71 -0.83 8.20 16 Total: -1.00 -74.23 392.44 1.26 -72.97 By element: Atomic # 1 Polarization: 39.02 SS G_CDS: -1.27 Total: 37.75 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 4.35 Total: 0.39 kcal Atomic # 7 Polarization: -101.96 SS G_CDS: -3.58 Total: -105.55 kcal Atomic # 8 Polarization: -52.97 SS G_CDS: -0.26 Total: -53.23 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -74.23 1.26 -72.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255154422.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.796 kcal (2) G-P(sol) polarization free energy of solvation -74.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds