Wall clock time and date at job start Tue Mar 31 2020 17:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50696 * 109.47165 * 183.56133 * 14 13 3 16 16 O 1.21278 * 120.00424 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00077 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00249 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47197 * 179.97438 * 18 17 15 20 20 O 1.20823 * 120.00126 * 359.97438 * 19 18 17 21 21 O 1.34229 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.45203 * 116.99814 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46822 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00336 * 269.72845 * 23 22 21 25 25 C 1.38234 * 119.99907 * 179.76735 * 24 23 22 26 26 C 1.38243 * 119.99865 * 0.50715 * 25 24 23 27 27 C 1.38231 * 120.00095 * 359.74763 * 26 25 24 28 28 C 1.38235 * 120.00071 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 30 30 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 31 31 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 32 32 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 33 33 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 34 34 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 35 35 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 36 36 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 37 37 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 38 38 H 0.97002 * 119.99687 * 359.97438 * 17 15 14 39 39 H 1.08999 * 109.46707 * 300.00087 * 18 17 15 40 40 H 1.08999 * 109.47364 * 60.00073 * 18 17 15 41 41 H 1.08993 * 109.47057 * 299.99912 * 22 21 19 42 42 H 1.08996 * 109.47196 * 60.00385 * 22 21 19 43 43 H 1.07994 * 119.99669 * 359.97438 * 24 23 22 44 44 H 1.07995 * 119.99793 * 180.23009 * 25 24 23 45 45 H 1.07996 * 119.99495 * 179.72358 * 26 25 24 46 46 H 1.07994 * 120.00239 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00171 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8516 2.7360 -3.5098 16 8 0.8632 3.4256 -3.3745 17 7 2.4849 2.6921 -4.6987 18 6 1.9790 3.4768 -5.8276 19 6 2.8601 3.2535 -7.0296 20 8 3.8132 2.5150 -6.9512 21 8 2.5861 3.8750 -8.1874 22 6 3.4778 3.6133 -9.3031 23 6 3.0158 4.3911 -10.5084 24 6 2.1218 3.8231 -11.3966 25 6 1.6944 4.5384 -12.4995 26 6 2.1691 5.8179 -12.7200 27 6 3.0672 6.3840 -11.8347 28 6 3.4902 5.6708 -10.7286 29 1 -0.3633 0.5819 0.8471 30 1 -0.3633 0.4427 -0.9275 31 1 -0.3634 -1.0245 0.0804 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3812 0.4612 1.7512 35 1 1.4035 3.1329 -0.9878 36 1 3.3906 2.2417 -2.1164 37 1 2.3678 0.8711 -2.6099 38 1 3.2762 2.1414 -4.8067 39 1 0.9609 3.1645 -6.0599 40 1 1.9837 4.5349 -5.5658 41 1 4.4900 3.9195 -9.0387 42 1 3.4689 2.5480 -9.5333 43 1 1.7547 2.8217 -11.2269 44 1 0.9930 4.0959 -13.1914 45 1 1.8386 6.3750 -13.5841 46 1 3.4384 7.3833 -12.0071 47 1 4.1922 6.1130 -10.0371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001255156838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:27 Heat of formation + Delta-G solvation = -98.465275 kcal Electronic energy + Delta-G solvation = -27050.601212 eV Core-core repulsion = 23005.303614 eV Total energy + Delta-G solvation = -4045.297598 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10394 -39.75295 -39.33149 -37.08026 -36.32173 -34.55757 -32.77445 -32.68240 -31.43527 -30.82366 -29.29735 -27.22683 -26.30264 -24.20702 -23.38077 -23.12559 -22.02374 -21.46173 -20.55634 -19.30685 -18.26193 -17.86179 -17.29428 -17.17931 -16.79754 -16.04880 -15.83824 -15.78384 -15.31891 -15.15510 -14.34770 -14.11944 -13.95596 -13.85822 -13.69356 -13.59460 -13.43104 -13.32381 -13.00459 -12.79952 -12.72149 -12.03922 -11.81997 -11.68968 -11.64744 -11.59425 -11.14794 -11.12362 -11.01616 -10.76912 -10.16272 -10.08218 -10.04242 -9.74488 -9.62597 -9.44261 -9.40184 -9.28838 -8.58788 -8.24340 -7.42096 -6.36626 -4.06369 0.62206 0.88274 1.70057 2.08090 2.78065 3.13913 3.35141 3.45301 3.48378 3.65915 4.02311 4.24350 4.32881 4.50128 4.52701 4.60283 4.66351 4.83746 4.92730 4.95976 4.97370 5.10424 5.18947 5.24061 5.37512 5.40726 5.50355 5.75942 5.78256 5.82636 5.93228 5.98663 6.00895 6.18695 6.30004 6.43086 6.43682 6.61762 6.93436 7.03291 7.21136 7.23979 7.38610 7.48297 7.56940 7.85301 8.08169 8.28294 8.50618 8.57891 8.86585 9.63743 11.00983 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001567 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.049765 B =17867.161172 C =18004.849192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.106 4.106 3 C 0.204 3.796 4 H -0.005 1.005 5 C -0.596 4.596 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.909 5.909 9 Si 1.067 2.933 10 H -0.284 1.284 11 H -0.289 1.289 12 H -0.287 1.287 13 N -0.662 5.662 14 C 0.044 3.956 15 C 0.520 3.480 16 O -0.521 6.521 17 N -0.734 5.734 18 C 0.130 3.870 19 C 0.462 3.538 20 O -0.503 6.503 21 O -0.347 6.347 22 C 0.109 3.891 23 C -0.100 4.100 24 C -0.094 4.094 25 C -0.123 4.123 26 C -0.109 4.109 27 C -0.123 4.123 28 C -0.094 4.094 29 H 0.060 0.940 30 H 0.048 0.952 31 H 0.017 0.983 32 H 0.018 0.982 33 H 0.060 0.940 34 H 0.270 0.730 35 H 0.345 0.655 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.411 0.589 39 H 0.112 0.888 40 H 0.111 0.889 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.125 0.875 44 H 0.126 0.874 45 H 0.125 0.875 46 H 0.126 0.874 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.435 7.220 -30.790 31.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.145 4.145 3 C 0.096 3.904 4 H 0.012 0.988 5 C -0.634 4.634 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.545 5.545 9 Si 0.895 3.105 10 H -0.209 1.209 11 H -0.216 1.216 12 H -0.213 1.213 13 N -0.296 5.296 14 C -0.089 4.089 15 C 0.307 3.693 16 O -0.394 6.394 17 N -0.394 5.394 18 C 0.005 3.995 19 C 0.304 3.696 20 O -0.391 6.391 21 O -0.263 6.263 22 C 0.036 3.964 23 C -0.100 4.100 24 C -0.112 4.112 25 C -0.141 4.141 26 C -0.127 4.127 27 C -0.141 4.141 28 C -0.112 4.112 29 H 0.079 0.921 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.037 0.963 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.164 0.836 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.248 0.752 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.143 0.857 44 H 0.144 0.856 45 H 0.143 0.857 46 H 0.144 0.856 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.664 6.952 -29.197 30.021 hybrid contribution 1.233 0.216 -1.776 2.173 sum 1.898 7.169 -30.973 31.849 Atomic orbital electron populations 1.21437 0.96378 0.97857 1.02181 1.21510 0.96436 0.98127 0.98410 1.19315 0.92273 0.91406 0.87442 0.98773 1.21941 1.31235 1.18654 0.91582 0.92624 1.25717 0.94731 0.96004 1.01613 1.70814 1.21986 1.28996 1.32691 0.83572 0.75820 0.75649 0.75459 1.20918 1.21550 1.21297 1.60427 1.48186 1.17282 1.03669 1.21837 0.96133 0.99866 0.91027 1.21065 0.83239 0.81943 0.83042 1.90703 1.25089 1.40574 1.83077 1.45893 1.33417 1.49975 1.10086 1.20574 0.97016 0.99535 0.82417 1.23660 0.84325 0.77064 0.84527 1.90686 1.28935 1.35410 1.84036 1.86562 1.54406 1.65571 1.19747 1.21869 0.92635 0.99987 0.81902 1.19490 0.99725 0.95392 0.95393 1.21121 0.95698 1.00172 0.94208 1.21193 1.00233 0.94919 0.97779 1.21282 0.96738 0.95441 0.99216 1.21191 0.98021 1.00144 0.94769 1.21126 0.99329 0.93337 0.97403 0.92071 0.93260 0.96351 0.96310 0.92181 0.91892 0.83570 0.93024 0.88763 0.75225 0.87019 0.87083 0.89933 0.89936 0.85666 0.85598 0.85744 0.85599 0.85667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.69 9.52 37.16 0.35 -2.34 16 2 C -0.11 -2.47 5.49 -26.73 -0.15 -2.62 16 3 C 0.20 4.97 1.93 -68.86 -0.13 4.84 16 4 H -0.01 -0.14 7.09 -51.93 -0.37 -0.50 16 5 C -0.60 -16.20 7.24 -34.44 -0.25 -16.45 16 6 H 0.06 1.54 7.67 -52.49 -0.40 1.14 16 7 C 0.02 0.67 5.18 -17.82 -0.09 0.58 16 8 N -0.91 -26.58 13.04 55.43 0.72 -25.85 16 9 Si 1.07 24.98 29.91 -169.99 -5.09 19.89 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 12 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 13 N -0.66 -14.22 5.24 -109.22 -0.57 -14.79 16 14 C 0.04 0.76 6.01 -4.98 -0.03 0.73 16 15 C 0.52 8.27 7.86 -10.99 -0.09 8.18 16 16 O -0.52 -10.00 16.12 5.56 0.09 -9.91 16 17 N -0.73 -8.96 5.53 -61.48 -0.34 -9.30 16 18 C 0.13 1.32 6.27 -5.20 -0.03 1.29 16 19 C 0.46 4.65 8.03 36.01 0.29 4.93 16 20 O -0.50 -6.07 15.42 -18.75 -0.29 -6.36 16 21 O -0.35 -3.20 10.20 -39.25 -0.40 -3.60 16 22 C 0.11 0.84 5.59 36.01 0.20 1.04 16 23 C -0.10 -0.73 5.52 -104.62 -0.58 -1.31 16 24 C -0.09 -0.63 9.70 -39.58 -0.38 -1.01 16 25 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 26 C -0.11 -0.61 10.05 -39.58 -0.40 -1.00 16 27 C -0.12 -0.72 10.05 -39.58 -0.40 -1.12 16 28 C -0.09 -0.63 9.70 -39.58 -0.38 -1.01 16 29 H 0.06 1.47 7.13 -51.93 -0.37 1.10 16 30 H 0.05 1.07 7.70 -51.93 -0.40 0.67 16 31 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.02 0.39 7.62 -51.93 -0.40 -0.01 16 33 H 0.06 1.53 6.38 -51.93 -0.33 1.20 16 34 H 0.27 7.84 6.04 -40.82 -0.25 7.59 16 35 H 0.35 7.76 7.80 -39.29 -0.31 7.46 16 36 H 0.05 0.85 7.97 -51.93 -0.41 0.44 16 37 H 0.09 1.52 7.61 -51.93 -0.40 1.12 16 38 H 0.41 4.58 7.44 -40.82 -0.30 4.28 16 39 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 42 H 0.08 0.58 8.07 -51.93 -0.42 0.17 16 43 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 44 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 45 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 46 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 47 H 0.13 0.68 8.06 -52.48 -0.42 0.25 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -32.82 396.26 -9.32 -42.14 By element: Atomic # 1 Polarization: 15.16 SS G_CDS: -6.95 Total: 8.21 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: -2.46 Total: -6.39 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: -0.19 Total: -49.95 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: -0.60 Total: -19.88 kcal Atomic # 14 Polarization: 24.98 SS G_CDS: -5.09 Total: 19.89 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.82 -9.32 -42.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.326 kcal (2) G-P(sol) polarization free energy of solvation -32.822 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds