Wall clock time and date at job start Tue Mar 31 2020 17:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47098 * 2 1 4 4 H 1.08997 * 109.47305 * 181.84575 * 3 2 1 5 5 C 1.50708 * 109.47142 * 61.85113 * 3 2 1 6 6 H 1.07998 * 120.00178 * 244.99063 * 5 3 2 7 7 C 1.37880 * 119.99942 * 64.98326 * 5 3 2 8 8 N 1.31513 * 119.99957 * 9.79837 * 7 5 3 9 9 Si 1.86800 * 119.99909 * 189.79590 * 7 5 3 10 10 H 1.48506 * 109.47054 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47244 * 299.99987 * 9 7 5 12 12 H 1.48500 * 109.46816 * 60.00610 * 9 7 5 13 13 N 1.46896 * 109.47300 * 301.85313 * 3 2 1 14 14 C 1.46900 * 110.99839 * 274.23412 * 13 3 2 15 15 C 1.50696 * 109.47165 * 183.56133 * 14 13 3 16 16 O 1.21278 * 120.00424 * 0.02562 * 15 14 13 17 17 N 1.34779 * 120.00077 * 179.97438 * 15 14 13 18 18 C 1.46498 * 120.00249 * 180.02562 * 17 15 14 19 19 C 1.50699 * 109.47197 * 179.97438 * 18 17 15 20 20 O 1.20823 * 120.00126 * 359.97438 * 19 18 17 21 21 O 1.34229 * 119.99951 * 179.97438 * 19 18 17 22 22 C 1.45203 * 116.99814 * 179.97438 * 21 19 18 23 23 C 1.50705 * 109.46822 * 179.97438 * 22 21 19 24 24 C 1.38234 * 120.00336 * 269.72845 * 23 22 21 25 25 C 1.38234 * 119.99907 * 179.76735 * 24 23 22 26 26 C 1.38243 * 119.99865 * 0.50715 * 25 24 23 27 27 C 1.38231 * 120.00095 * 359.74763 * 26 25 24 28 28 C 1.38235 * 120.00071 * 359.97438 * 27 26 25 29 29 H 1.08999 * 109.46877 * 304.48761 * 1 2 3 30 30 H 1.09005 * 109.46996 * 64.48620 * 1 2 3 31 31 H 1.09002 * 109.47231 * 184.48592 * 1 2 3 32 32 H 1.08998 * 109.46901 * 240.00272 * 2 1 3 33 33 H 1.09000 * 109.47196 * 119.99665 * 2 1 3 34 34 H 0.97004 * 120.00255 * 357.09370 * 8 7 5 35 35 H 1.00899 * 111.00000 * 150.28100 * 13 3 2 36 36 H 1.09004 * 109.47078 * 303.56314 * 14 13 3 37 37 H 1.09000 * 109.47620 * 63.55708 * 14 13 3 38 38 H 0.97002 * 119.99687 * 359.97438 * 17 15 14 39 39 H 1.08999 * 109.46707 * 300.00087 * 18 17 15 40 40 H 1.08999 * 109.47364 * 60.00073 * 18 17 15 41 41 H 1.08993 * 109.47057 * 299.99912 * 22 21 19 42 42 H 1.08996 * 109.47196 * 60.00385 * 22 21 19 43 43 H 1.07994 * 119.99669 * 359.97438 * 24 23 22 44 44 H 1.07995 * 119.99793 * 180.23009 * 25 24 23 45 45 H 1.07996 * 119.99495 * 179.72358 * 26 25 24 46 46 H 1.07994 * 120.00239 * 179.97438 * 27 26 25 47 47 H 1.08004 * 120.00171 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1295 1.4427 -0.0331 5 6 1.5755 2.1396 1.2528 6 1 0.8873 2.9692 1.1857 7 6 2.0289 1.7180 2.4848 8 7 3.0071 0.8423 2.5610 9 14 1.2539 2.3909 4.0456 10 1 1.9152 1.7833 5.2283 11 1 1.4232 3.8656 4.0864 12 1 -0.1932 2.0579 4.0629 13 7 1.5141 2.1478 -1.1764 14 6 2.3724 1.9293 -2.3484 15 6 1.8516 2.7360 -3.5098 16 8 0.8632 3.4256 -3.3745 17 7 2.4849 2.6921 -4.6987 18 6 1.9790 3.4768 -5.8276 19 6 2.8601 3.2535 -7.0296 20 8 3.8132 2.5150 -6.9512 21 8 2.5861 3.8750 -8.1874 22 6 3.4778 3.6133 -9.3031 23 6 3.0158 4.3911 -10.5084 24 6 2.1218 3.8231 -11.3966 25 6 1.6944 4.5384 -12.4995 26 6 2.1691 5.8179 -12.7200 27 6 3.0672 6.3840 -11.8347 28 6 3.4902 5.6708 -10.7286 29 1 -0.3633 0.5819 0.8471 30 1 -0.3633 0.4427 -0.9275 31 1 -0.3634 -1.0245 0.0804 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.3812 0.4612 1.7512 35 1 1.4035 3.1329 -0.9878 36 1 3.3906 2.2417 -2.1164 37 1 2.3678 0.8711 -2.6099 38 1 3.2762 2.1414 -4.8067 39 1 0.9609 3.1645 -6.0599 40 1 1.9837 4.5349 -5.5658 41 1 4.4900 3.9195 -9.0387 42 1 3.4689 2.5480 -9.5333 43 1 1.7547 2.8217 -11.2269 44 1 0.9930 4.0959 -13.1914 45 1 1.8386 6.3750 -13.5841 46 1 3.4384 7.3833 -12.0071 47 1 4.1922 6.1130 -10.0371 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001255156838.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:26 Heat of formation + Delta-G solvation = -118.851277 kcal Electronic energy + Delta-G solvation = -27051.485215 eV Core-core repulsion = 23005.303614 eV Total energy + Delta-G solvation = -4046.181601 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.92317 -40.75007 -40.06232 -38.21220 -37.79981 -35.67967 -34.59035 -33.25860 -32.66865 -31.86442 -30.39391 -28.53123 -27.31119 -25.94688 -25.20677 -23.56131 -22.67621 -22.16742 -21.76427 -21.16553 -19.51659 -18.76215 -18.49565 -17.95238 -17.68362 -17.29393 -16.93170 -16.64134 -16.16200 -15.92870 -15.81593 -15.59246 -15.50829 -15.16830 -14.70623 -14.58026 -14.31742 -14.24891 -13.94834 -13.86930 -13.65686 -13.51042 -13.31229 -13.29417 -13.05298 -12.61052 -12.18596 -12.13444 -11.98434 -11.94482 -11.87441 -11.81100 -11.77088 -11.59889 -11.05138 -10.62577 -10.37994 -10.31903 -9.88804 -9.87256 -9.15967 -8.56379 -6.26154 0.12413 0.43811 0.89396 1.29227 1.50687 1.56301 1.63204 1.82172 2.14930 2.59262 2.83348 3.23388 3.38632 3.55552 3.67874 3.75576 3.80726 4.07934 4.13554 4.19788 4.22603 4.28361 4.29081 4.32443 4.38710 4.49416 4.56233 4.57956 4.67296 4.77206 4.97224 5.03861 5.05185 5.09009 5.18216 5.20790 5.38276 5.48793 5.53969 5.54275 5.56189 5.72129 5.88526 6.01774 6.08837 6.27271 6.43233 6.51238 6.58812 6.78667 7.08554 7.51004 8.81950 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031773 B = 0.001567 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.049765 B =17867.161172 C =18004.849192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.101 4.101 3 C 0.207 3.793 4 H -0.027 1.027 5 C -0.602 4.602 6 H 0.046 0.954 7 C -0.021 4.021 8 N -0.932 5.932 9 Si 1.108 2.892 10 H -0.286 1.286 11 H -0.275 1.275 12 H -0.274 1.274 13 N -0.665 5.665 14 C 0.042 3.958 15 C 0.529 3.471 16 O -0.556 6.556 17 N -0.718 5.718 18 C 0.129 3.871 19 C 0.472 3.528 20 O -0.525 6.525 21 O -0.347 6.347 22 C 0.108 3.892 23 C -0.116 4.116 24 C -0.107 4.107 25 C -0.131 4.131 26 C -0.113 4.113 27 C -0.131 4.131 28 C -0.107 4.107 29 H 0.036 0.964 30 H 0.053 0.947 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.034 0.966 34 H 0.260 0.740 35 H 0.337 0.663 36 H 0.061 0.939 37 H 0.109 0.891 38 H 0.418 0.582 39 H 0.123 0.877 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.133 0.867 44 H 0.144 0.856 45 H 0.146 0.854 46 H 0.144 0.856 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.841 7.702 -32.472 33.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.098 3.902 4 H -0.010 1.010 5 C -0.641 4.641 6 H 0.064 0.936 7 C -0.220 4.220 8 N -0.569 5.569 9 Si 0.931 3.069 10 H -0.211 1.211 11 H -0.200 1.200 12 H -0.200 1.200 13 N -0.297 5.297 14 C -0.090 4.090 15 C 0.316 3.684 16 O -0.433 6.433 17 N -0.377 5.377 18 C 0.004 3.996 19 C 0.316 3.684 20 O -0.414 6.414 21 O -0.263 6.263 22 C 0.035 3.965 23 C -0.116 4.116 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.131 4.131 27 C -0.149 4.149 28 C -0.125 4.125 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.155 0.845 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.256 0.744 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.104 0.896 42 H 0.105 0.895 43 H 0.151 0.849 44 H 0.162 0.838 45 H 0.164 0.836 46 H 0.162 0.838 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.089 7.433 -30.944 31.824 hybrid contribution 1.451 0.100 -1.430 2.039 sum 1.540 7.532 -32.373 33.274 Atomic orbital electron populations 1.21322 0.95334 0.98935 1.01256 1.21408 0.97233 0.97153 0.98222 1.19162 0.90883 0.92265 0.87867 1.01004 1.22210 1.30515 1.18359 0.92981 0.93588 1.26940 0.94546 0.95810 1.04718 1.70917 1.23363 1.30409 1.32225 0.83029 0.75643 0.75919 0.72305 1.21130 1.20009 1.19984 1.60332 1.49150 1.16400 1.03784 1.21888 0.95908 1.01132 0.90114 1.20654 0.82799 0.81343 0.83584 1.90696 1.26713 1.42165 1.83730 1.45657 1.32938 1.49478 1.09580 1.20702 0.97415 0.99753 0.81719 1.23495 0.83707 0.76543 0.84668 1.90683 1.29851 1.36455 1.84392 1.86554 1.54774 1.65222 1.19792 1.22004 0.92526 1.00432 0.81529 1.19565 1.00633 0.95884 0.95509 1.21334 0.95794 1.00786 0.94560 1.21490 1.00420 0.95151 0.97801 1.21621 0.96260 0.95520 0.99728 1.21484 0.97974 1.00956 0.94475 1.21336 0.99712 0.93376 0.98093 0.94463 0.92823 0.94009 0.94064 0.94693 0.92927 0.84514 0.92087 0.87350 0.74382 0.85952 0.86057 0.89609 0.89548 0.84901 0.83798 0.83643 0.83839 0.84968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.81 9.52 71.98 0.69 -4.13 16 2 C -0.10 -4.69 5.49 30.59 0.17 -4.52 16 3 C 0.21 10.16 1.93 44.17 0.09 10.25 16 4 H -0.03 -1.45 7.09 -2.39 -0.02 -1.47 16 5 C -0.60 -33.05 7.24 25.60 0.19 -32.87 16 6 H 0.05 2.57 7.67 -2.91 -0.02 2.54 16 7 C -0.02 -1.15 5.18 84.66 0.44 -0.72 16 8 N -0.93 -55.20 13.04 21.45 0.28 -54.92 16 9 Si 1.11 50.21 29.91 68.60 2.05 52.26 16 10 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 N -0.66 -28.33 5.24 -499.46 -2.62 -30.95 16 14 C 0.04 1.40 6.01 85.56 0.51 1.91 16 15 C 0.53 16.19 7.86 87.66 0.69 16.88 16 16 O -0.56 -20.90 16.12 -3.02 -0.05 -20.95 16 17 N -0.72 -16.40 5.53 -466.80 -2.58 -18.98 16 18 C 0.13 2.41 6.27 85.63 0.54 2.95 16 19 C 0.47 8.88 8.03 71.24 0.57 9.45 16 20 O -0.52 -12.04 15.42 21.97 0.34 -11.70 16 21 O -0.35 -6.03 10.20 -51.40 -0.52 -6.55 16 22 C 0.11 1.57 5.59 71.24 0.40 1.97 16 23 C -0.12 -1.61 5.52 -19.86 -0.11 -1.72 16 24 C -0.11 -1.32 9.70 22.27 0.22 -1.11 16 25 C -0.13 -1.33 10.05 22.27 0.22 -1.11 16 26 C -0.11 -1.06 10.05 22.27 0.22 -0.84 16 27 C -0.13 -1.35 10.05 22.27 0.22 -1.13 16 28 C -0.11 -1.34 9.70 22.27 0.22 -1.13 16 29 H 0.04 1.76 7.13 -2.39 -0.02 1.74 16 30 H 0.05 2.25 7.70 -2.38 -0.02 2.23 16 31 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.04 1.69 7.62 -2.39 -0.02 1.67 16 33 H 0.03 1.78 6.38 -2.39 -0.02 1.76 16 34 H 0.26 15.47 6.04 -92.70 -0.56 14.91 16 35 H 0.34 15.24 7.80 -89.69 -0.70 14.54 16 36 H 0.06 1.95 7.97 -2.38 -0.02 1.93 16 37 H 0.11 3.30 7.61 -2.39 -0.02 3.28 16 38 H 0.42 8.61 7.44 -92.71 -0.69 7.92 16 39 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.12 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.09 1.17 8.08 -2.39 -0.02 1.15 16 42 H 0.09 1.17 8.07 -2.39 -0.02 1.15 16 43 H 0.13 1.31 8.06 -2.91 -0.02 1.29 16 44 H 0.14 0.84 8.06 -2.91 -0.02 0.82 16 45 H 0.15 0.67 8.06 -2.91 -0.02 0.64 16 46 H 0.14 0.86 8.06 -2.91 -0.02 0.84 16 47 H 0.13 1.34 8.06 -2.91 -0.02 1.32 16 Total: -1.00 -69.94 396.26 1.98 -67.96 By element: Atomic # 1 Polarization: 29.87 SS G_CDS: -0.19 Total: 29.68 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 5.27 Total: -5.85 kcal Atomic # 7 Polarization: -99.93 SS G_CDS: -4.92 Total: -104.84 kcal Atomic # 8 Polarization: -38.97 SS G_CDS: -0.23 Total: -39.20 kcal Atomic # 14 Polarization: 50.21 SS G_CDS: 2.05 Total: 52.26 kcal Total: -69.94 1.98 -67.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001255156838.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.889 kcal (2) G-P(sol) polarization free energy of solvation -69.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds