Wall clock time and date at job start Tue Mar 31 2020 17:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 C 1.52996 * 109.47218 * 120.00170 * 2 1 3 5 5 O 1.42898 * 109.46990 * 64.99748 * 4 2 1 6 6 N 1.41604 * 113.99897 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99551 * 179.97438 * 6 5 4 8 8 O 1.21345 * 120.00495 * 0.02562 * 7 6 5 9 9 C 1.49458 * 119.99446 * 180.02562 * 7 6 5 10 10 O 1.21341 * 120.00393 * 359.97438 * 9 7 6 11 11 N 1.34782 * 119.99587 * 180.02562 * 9 7 6 12 12 C 1.46498 * 119.99830 * 175.03343 * 11 9 7 13 13 H 1.09003 * 109.47331 * 38.67394 * 12 11 9 14 14 C 1.53003 * 109.47099 * 278.67893 * 12 11 9 15 15 C 1.50695 * 109.47252 * 174.19663 * 14 12 11 16 16 H 1.08002 * 120.00223 * 354.85105 * 15 14 12 17 17 C 1.37880 * 119.99982 * 174.57384 * 15 14 12 18 18 N 1.31513 * 119.99942 * 0.27819 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 180.27589 * 17 15 14 20 20 H 1.48497 * 109.47015 * 60.00455 * 19 17 15 21 21 H 1.48502 * 109.47103 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47289 * 300.00252 * 19 17 15 23 23 C 1.50695 * 109.47550 * 158.67988 * 12 11 9 24 24 C 1.38238 * 119.99900 * 39.72085 * 23 12 11 25 25 C 1.38234 * 119.99859 * 179.79296 * 24 23 12 26 26 C 1.38228 * 120.00026 * 0.44135 * 25 24 23 27 27 C 1.38232 * 120.00252 * 359.81714 * 26 25 24 28 28 C 1.38234 * 120.00213 * 220.00386 * 23 12 11 29 29 H 1.08999 * 109.46999 * 59.99688 * 1 2 3 30 30 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46879 * 299.99954 * 1 2 3 32 32 H 1.08997 * 109.47047 * 240.00077 * 2 1 3 33 33 H 1.08994 * 109.46867 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47017 * 300.00459 * 3 2 1 35 35 H 1.09005 * 109.46471 * 60.00141 * 3 2 1 36 36 H 1.09003 * 109.47495 * 304.99907 * 4 2 1 37 37 H 1.08994 * 109.47291 * 184.99754 * 4 2 1 38 38 H 0.96996 * 120.00224 * 0.02562 * 6 5 4 39 39 H 0.96997 * 120.00094 * 355.02658 * 11 9 7 40 40 H 1.09002 * 109.46815 * 54.19472 * 14 12 11 41 41 H 1.09004 * 109.46993 * 294.20073 * 14 12 11 42 42 H 0.97001 * 120.00349 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99917 * 359.97438 * 24 23 12 44 44 H 1.08005 * 119.99506 * 180.27476 * 25 24 23 45 45 H 1.08001 * 120.00225 * 179.83432 * 26 25 24 46 46 H 1.08001 * 120.00520 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.00053 * 359.97029 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0981 1.1919 6 7 2.0885 -2.8594 2.3072 7 6 1.7964 -4.1732 2.3776 8 8 1.1683 -4.7039 1.4852 9 6 2.2460 -4.9766 3.5550 10 8 2.8744 -4.4460 4.4472 11 7 1.9544 -6.2906 3.6252 12 6 2.4867 -7.1013 4.7231 13 1 2.4671 -6.5213 5.6458 14 6 3.9277 -7.5063 4.4059 15 6 4.5227 -8.2177 5.5937 16 1 3.9627 -8.2932 6.5141 17 6 5.7796 -8.7771 5.5036 18 7 6.4616 -8.6852 4.3829 19 14 6.5140 -9.6657 6.9735 20 1 5.6401 -10.8057 7.3500 21 1 7.8649 -10.1720 6.6216 22 1 6.6210 -8.7251 8.1177 23 6 1.6424 -8.3384 4.8894 24 6 1.1674 -9.0059 3.7758 25 6 0.3965 -10.1431 3.9283 26 6 0.0929 -10.6076 5.1942 27 6 0.5633 -9.9372 6.3078 28 6 1.3379 -8.8025 6.1554 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6055 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 2.5901 -2.4351 3.0207 39 1 1.3920 -6.6994 2.9489 40 1 4.5151 -6.6152 4.1843 41 1 3.9365 -8.1712 3.5422 42 1 7.3460 -9.0784 4.3196 43 1 1.4012 -8.6405 2.7867 44 1 0.0292 -10.6670 3.0582 45 1 -0.5117 -11.4946 5.3134 46 1 0.3264 -10.3004 7.2970 47 1 1.7055 -8.2787 7.0254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261166976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:27 Heat of formation + Delta-G solvation = -51.977073 kcal Electronic energy + Delta-G solvation = -28178.860570 eV Core-core repulsion = 24135.578852 eV Total energy + Delta-G solvation = -4043.281718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42265 -39.14834 -38.40327 -37.69221 -35.61854 -35.21140 -32.90746 -31.95522 -31.17213 -30.44064 -28.69368 -27.53709 -26.58547 -25.53525 -23.69851 -22.38387 -22.11008 -21.05382 -20.28014 -19.64773 -18.94274 -17.85491 -16.69490 -16.56967 -16.32664 -15.95469 -15.52017 -15.23558 -14.80023 -14.70424 -14.56287 -14.32628 -14.14938 -13.76287 -13.49891 -13.31265 -12.96885 -12.89055 -12.82927 -12.54215 -12.51594 -12.17870 -11.75827 -11.62558 -11.55757 -11.40373 -11.19553 -11.17608 -10.99474 -10.87260 -10.79625 -10.64594 -10.10849 -10.01248 -9.53821 -9.18425 -9.11526 -8.72358 -8.47927 -8.37671 -8.11582 -6.02661 -4.04779 1.42257 1.61045 1.81603 1.85391 3.33107 3.34620 3.37443 3.40791 3.47399 4.19895 4.26471 4.37891 4.42522 4.44488 4.64178 4.75002 5.00587 5.07700 5.18516 5.19525 5.27913 5.28407 5.34919 5.37149 5.46541 5.51127 5.53944 5.67561 5.86406 5.89794 5.95682 5.97042 6.10880 6.34260 6.43818 6.51316 6.55081 6.60983 6.81114 6.87294 6.89907 7.09706 7.41002 7.45842 7.60233 7.71530 7.93330 7.96004 8.21324 8.33041 8.98308 9.58351 11.08937 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.002678 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.987492 B =10453.686761 C =12114.500294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.032 3.968 5 O -0.138 6.138 6 N -0.573 5.573 7 C 0.521 3.479 8 O -0.505 6.505 9 C 0.520 3.480 10 O -0.514 6.514 11 N -0.684 5.684 12 C 0.180 3.820 13 H 0.093 0.907 14 C 0.023 3.977 15 C -0.513 4.513 16 H 0.059 0.941 17 C 0.061 3.939 18 N -0.893 5.893 19 Si 0.892 3.108 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.276 1.276 23 C -0.052 4.052 24 C -0.118 4.118 25 C -0.120 4.120 26 C -0.132 4.132 27 C -0.121 4.121 28 C -0.095 4.095 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.084 0.916 33 H 0.059 0.941 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.066 0.934 38 H 0.421 0.579 39 H 0.406 0.594 40 H 0.025 0.975 41 H 0.027 0.973 42 H 0.261 0.739 43 H 0.117 0.883 44 H 0.116 0.884 45 H 0.114 0.886 46 H 0.117 0.883 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.607 12.612 -4.895 18.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.108 4.108 3 C -0.202 4.202 4 C -0.046 4.046 5 O -0.142 6.142 6 N -0.277 5.277 7 C 0.302 3.698 8 O -0.378 6.378 9 C 0.299 3.701 10 O -0.390 6.390 11 N -0.337 5.337 12 C 0.078 3.922 13 H 0.111 0.889 14 C -0.014 4.014 15 C -0.552 4.552 16 H 0.077 0.923 17 C -0.141 4.141 18 N -0.532 5.532 19 Si 0.719 3.281 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.201 1.201 23 C -0.053 4.053 24 C -0.136 4.136 25 C -0.138 4.138 26 C -0.150 4.150 27 C -0.139 4.139 28 C -0.114 4.114 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.263 0.737 39 H 0.243 0.757 40 H 0.044 0.956 41 H 0.045 0.955 42 H 0.071 0.929 43 H 0.135 0.865 44 H 0.135 0.865 45 H 0.132 0.868 46 H 0.135 0.865 47 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.534 12.463 -5.147 18.410 hybrid contribution 0.765 -0.321 0.702 1.087 sum -11.769 12.142 -4.445 17.484 Atomic orbital electron populations 1.21858 0.94132 1.02865 1.01837 1.21069 0.97070 0.95782 0.96845 1.21792 1.01356 0.94522 1.02580 1.23216 1.00285 0.81121 0.99954 1.90572 1.76180 1.19871 1.27579 1.47133 1.57362 1.06315 1.16908 1.20495 0.80751 0.80512 0.88006 1.90758 1.38277 1.69820 1.38930 1.19326 0.81584 0.83464 0.85775 1.90793 1.39115 1.70577 1.38509 1.46094 1.50543 1.07457 1.29573 1.20548 0.95382 0.87458 0.88793 0.88907 1.19464 0.86685 0.97197 0.98097 1.20958 1.01044 1.35213 0.97976 0.92306 1.24945 0.97087 0.96200 0.95843 1.69949 1.12483 1.45225 1.25531 0.86658 0.78290 0.80114 0.83005 1.20160 1.21336 1.20150 1.19797 0.95227 0.96728 0.93515 1.20889 0.98415 0.96089 0.98213 1.20989 0.99136 0.96559 0.97095 1.21003 1.01239 0.99927 0.92854 1.21037 0.98620 0.95901 0.98374 1.20942 0.96905 0.96760 0.96783 0.92328 0.91635 0.92592 0.89782 0.92187 0.91587 0.92250 0.91720 0.91615 0.73747 0.75728 0.95642 0.95464 0.92888 0.86467 0.86548 0.86786 0.86529 0.85940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.09 37.16 0.34 -0.80 16 2 C -0.09 -0.65 3.16 -90.62 -0.29 -0.94 16 3 C -0.15 -0.79 9.19 37.16 0.34 -0.45 16 4 C 0.03 0.28 5.61 37.16 0.21 0.49 16 5 O -0.14 -1.80 10.64 -29.65 -0.32 -2.11 16 6 N -0.57 -7.84 6.38 30.91 0.20 -7.65 16 7 C 0.52 8.55 8.04 -11.58 -0.09 8.46 16 8 O -0.51 -9.33 16.89 -12.68 -0.21 -9.54 16 9 C 0.52 9.23 7.75 -11.58 -0.09 9.14 16 10 O -0.51 -10.10 16.17 5.50 0.09 -10.01 16 11 N -0.68 -12.12 5.04 -55.36 -0.28 -12.40 16 12 C 0.18 3.62 2.19 -69.08 -0.15 3.47 16 13 H 0.09 1.93 7.49 -51.93 -0.39 1.54 16 14 C 0.02 0.58 4.68 -27.88 -0.13 0.45 16 15 C -0.51 -13.89 8.53 -34.44 -0.29 -14.19 16 16 H 0.06 1.52 6.79 -52.49 -0.36 1.16 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 19 Si 0.89 21.47 29.54 -169.99 -5.02 16.45 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 23 C -0.05 -0.96 4.50 -104.63 -0.47 -1.43 16 24 C -0.12 -1.98 9.02 -39.58 -0.36 -2.34 16 25 C -0.12 -1.79 10.05 -39.59 -0.40 -2.19 16 26 C -0.13 -1.90 10.05 -39.59 -0.40 -2.29 16 27 C -0.12 -1.84 10.05 -39.58 -0.40 -2.24 16 28 C -0.10 -1.65 8.83 -39.58 -0.35 -2.00 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.62 7.82 -51.93 -0.41 0.21 16 31 H 0.05 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.42 4.84 8.01 -40.82 -0.33 4.51 16 39 H 0.41 6.52 6.34 -40.82 -0.26 6.26 16 40 H 0.03 0.70 8.08 -51.93 -0.42 0.28 16 41 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.12 1.84 6.95 -52.48 -0.36 1.48 16 44 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 45 H 0.11 1.32 8.06 -52.49 -0.42 0.90 16 46 H 0.12 1.47 8.06 -52.49 -0.42 1.05 16 47 H 0.12 2.04 7.84 -52.49 -0.41 1.62 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -33.13 400.55 -8.54 -41.66 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -7.14 Total: 8.58 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: -2.62 Total: -5.24 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: 0.65 Total: -45.83 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.44 Total: -21.67 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.13 -8.54 -41.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261166976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.315 kcal (2) G-P(sol) polarization free energy of solvation -33.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds