Wall clock time and date at job start Tue Mar 31 2020 17:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.47210 * 2 1 4 4 C 1.52996 * 109.47218 * 120.00170 * 2 1 3 5 5 O 1.42898 * 109.46990 * 64.99748 * 4 2 1 6 6 N 1.41604 * 113.99897 * 179.97438 * 5 4 2 7 7 C 1.34779 * 119.99551 * 179.97438 * 6 5 4 8 8 O 1.21345 * 120.00495 * 0.02562 * 7 6 5 9 9 C 1.49458 * 119.99446 * 180.02562 * 7 6 5 10 10 O 1.21341 * 120.00393 * 359.97438 * 9 7 6 11 11 N 1.34782 * 119.99587 * 180.02562 * 9 7 6 12 12 C 1.46498 * 119.99830 * 175.03343 * 11 9 7 13 13 H 1.09003 * 109.47331 * 38.67394 * 12 11 9 14 14 C 1.53003 * 109.47099 * 278.67893 * 12 11 9 15 15 C 1.50695 * 109.47252 * 174.19663 * 14 12 11 16 16 H 1.08002 * 120.00223 * 354.85105 * 15 14 12 17 17 C 1.37880 * 119.99982 * 174.57384 * 15 14 12 18 18 N 1.31513 * 119.99942 * 0.27819 * 17 15 14 19 19 Si 1.86798 * 120.00022 * 180.27589 * 17 15 14 20 20 H 1.48497 * 109.47015 * 60.00455 * 19 17 15 21 21 H 1.48502 * 109.47103 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47289 * 300.00252 * 19 17 15 23 23 C 1.50695 * 109.47550 * 158.67988 * 12 11 9 24 24 C 1.38238 * 119.99900 * 39.72085 * 23 12 11 25 25 C 1.38234 * 119.99859 * 179.79296 * 24 23 12 26 26 C 1.38228 * 120.00026 * 0.44135 * 25 24 23 27 27 C 1.38232 * 120.00252 * 359.81714 * 26 25 24 28 28 C 1.38234 * 120.00213 * 220.00386 * 23 12 11 29 29 H 1.08999 * 109.46999 * 59.99688 * 1 2 3 30 30 H 1.08997 * 109.47046 * 180.02562 * 1 2 3 31 31 H 1.09010 * 109.46879 * 299.99954 * 1 2 3 32 32 H 1.08997 * 109.47047 * 240.00077 * 2 1 3 33 33 H 1.08994 * 109.46867 * 179.97438 * 3 2 1 34 34 H 1.09000 * 109.47017 * 300.00459 * 3 2 1 35 35 H 1.09005 * 109.46471 * 60.00141 * 3 2 1 36 36 H 1.09003 * 109.47495 * 304.99907 * 4 2 1 37 37 H 1.08994 * 109.47291 * 184.99754 * 4 2 1 38 38 H 0.96996 * 120.00224 * 0.02562 * 6 5 4 39 39 H 0.96997 * 120.00094 * 355.02658 * 11 9 7 40 40 H 1.09002 * 109.46815 * 54.19472 * 14 12 11 41 41 H 1.09004 * 109.46993 * 294.20073 * 14 12 11 42 42 H 0.97001 * 120.00349 * 179.97438 * 18 17 15 43 43 H 1.08003 * 119.99917 * 359.97438 * 24 23 12 44 44 H 1.08005 * 119.99506 * 180.27476 * 25 24 23 45 45 H 1.08001 * 120.00225 * 179.83432 * 26 25 24 46 46 H 1.08001 * 120.00520 * 180.02562 * 27 26 25 47 47 H 1.07998 * 120.00053 * 359.97029 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 8 1.6620 -2.0981 1.1919 6 7 2.0885 -2.8594 2.3072 7 6 1.7964 -4.1732 2.3776 8 8 1.1683 -4.7039 1.4852 9 6 2.2460 -4.9766 3.5550 10 8 2.8744 -4.4460 4.4472 11 7 1.9544 -6.2906 3.6252 12 6 2.4867 -7.1013 4.7231 13 1 2.4671 -6.5213 5.6458 14 6 3.9277 -7.5063 4.4059 15 6 4.5227 -8.2177 5.5937 16 1 3.9627 -8.2932 6.5141 17 6 5.7796 -8.7771 5.5036 18 7 6.4616 -8.6852 4.3829 19 14 6.5140 -9.6657 6.9735 20 1 5.6401 -10.8057 7.3500 21 1 7.8649 -10.1720 6.6216 22 1 6.6210 -8.7251 8.1177 23 6 1.6424 -8.3384 4.8894 24 6 1.1674 -9.0059 3.7758 25 6 0.3965 -10.1431 3.9283 26 6 0.0929 -10.6076 5.1942 27 6 0.5633 -9.9372 6.3078 28 6 1.3379 -8.8025 6.1554 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 1.6055 -0.2618 2.1370 37 1 3.1263 -0.6444 1.2951 38 1 2.5901 -2.4351 3.0207 39 1 1.3920 -6.6994 2.9489 40 1 4.5151 -6.6152 4.1843 41 1 3.9365 -8.1712 3.5422 42 1 7.3460 -9.0784 4.3196 43 1 1.4012 -8.6405 2.7867 44 1 0.0292 -10.6670 3.0582 45 1 -0.5117 -11.4946 5.3134 46 1 0.3264 -10.3004 7.2970 47 1 1.7055 -8.2787 7.0254 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261166976.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:35:27 Heat of formation + Delta-G solvation = -72.397294 kcal Electronic energy + Delta-G solvation = -28179.746057 eV Core-core repulsion = 24135.578852 eV Total energy + Delta-G solvation = -4044.167205 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.84471 -40.43304 -39.59494 -38.84296 -36.96741 -36.21348 -34.90409 -33.11154 -32.69971 -31.66762 -30.40562 -28.07762 -27.63698 -26.93197 -25.26370 -23.92845 -23.47193 -22.08695 -21.34454 -21.09840 -20.13013 -19.07156 -18.55988 -17.89648 -17.37913 -17.35554 -16.77172 -16.59054 -16.47280 -16.02519 -15.72103 -15.46246 -15.17895 -15.06322 -14.80066 -14.48684 -14.25873 -14.16518 -14.12853 -13.88185 -13.55147 -13.15002 -13.02873 -12.95281 -12.90697 -12.69971 -12.53041 -12.47490 -12.14709 -12.01063 -11.89008 -11.83521 -11.66397 -11.65735 -11.37145 -10.87529 -10.54660 -10.30035 -10.20973 -9.70012 -9.48040 -8.17939 -6.26785 0.19773 0.25658 0.57163 0.61987 1.41052 1.44045 1.50887 1.97412 2.11306 2.43465 2.98581 3.16506 3.17465 3.39176 3.74942 3.78670 3.82184 4.03993 4.11725 4.24317 4.34983 4.35388 4.46699 4.47763 4.60753 4.70767 4.73456 4.77800 4.81825 4.94769 4.97784 4.99142 5.14298 5.17010 5.25170 5.27947 5.36531 5.43441 5.46135 5.47466 5.58184 5.67927 5.70195 5.75097 5.86960 6.15708 6.21655 6.25977 6.67386 6.82465 6.88104 7.40663 8.94498 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.002678 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.987492 B =10453.686761 C =12114.500294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.086 4.086 3 C -0.140 4.140 4 C 0.022 3.978 5 O -0.154 6.154 6 N -0.559 5.559 7 C 0.527 3.473 8 O -0.529 6.529 9 C 0.520 3.480 10 O -0.536 6.536 11 N -0.679 5.679 12 C 0.197 3.803 13 H 0.082 0.918 14 C 0.035 3.965 15 C -0.521 4.521 16 H 0.069 0.931 17 C 0.003 3.997 18 N -0.934 5.934 19 Si 0.959 3.041 20 H -0.264 1.264 21 H -0.287 1.287 22 H -0.267 1.267 23 C -0.078 4.078 24 C -0.133 4.133 25 C -0.121 4.121 26 C -0.126 4.126 27 C -0.122 4.122 28 C -0.114 4.114 29 H 0.070 0.930 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.431 0.569 39 H 0.415 0.585 40 H -0.012 1.012 41 H 0.001 0.999 42 H 0.262 0.738 43 H 0.118 0.882 44 H 0.145 0.855 45 H 0.150 0.850 46 H 0.145 0.855 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.946 12.272 -4.029 19.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 C -0.197 4.197 4 C -0.054 4.054 5 O -0.158 6.158 6 N -0.262 5.262 7 C 0.308 3.692 8 O -0.404 6.404 9 C 0.300 3.700 10 O -0.413 6.413 11 N -0.332 5.332 12 C 0.094 3.906 13 H 0.100 0.900 14 C -0.003 4.003 15 C -0.559 4.559 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.574 5.574 19 Si 0.784 3.216 20 H -0.189 1.189 21 H -0.213 1.213 22 H -0.192 1.192 23 C -0.079 4.079 24 C -0.151 4.151 25 C -0.139 4.139 26 C -0.144 4.144 27 C -0.140 4.140 28 C -0.133 4.133 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.094 0.906 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.085 0.915 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.275 0.725 39 H 0.253 0.747 40 H 0.006 0.994 41 H 0.019 0.981 42 H 0.070 0.930 43 H 0.136 0.864 44 H 0.163 0.837 45 H 0.168 0.832 46 H 0.163 0.837 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.887 12.161 -4.273 18.947 hybrid contribution 1.135 -0.130 0.376 1.203 sum -12.751 12.032 -3.898 17.960 Atomic orbital electron populations 1.21853 0.94260 1.01605 1.02884 1.21120 0.96961 0.96810 0.95693 1.21770 1.01619 0.92889 1.03461 1.23586 1.01328 0.79070 1.01459 1.90588 1.76444 1.21920 1.26881 1.46926 1.56099 1.05767 1.17409 1.20009 0.80785 0.81276 0.87130 1.90744 1.39667 1.70509 1.39518 1.19620 0.80916 0.83513 0.85989 1.90771 1.40053 1.71038 1.39471 1.45970 1.50376 1.07512 1.29342 1.20049 0.93185 0.88669 0.88717 0.89981 1.19224 0.89621 0.94740 0.96714 1.21359 1.01221 1.34582 0.98746 0.91323 1.25871 0.97715 0.97213 0.98683 1.70098 1.12880 1.46628 1.27833 0.85585 0.77382 0.79171 0.79490 1.18904 1.21285 1.19183 1.19715 0.96708 0.96581 0.94880 1.21054 0.99147 0.97085 0.97825 1.21368 0.98103 0.95670 0.98774 1.21468 1.00349 1.00474 0.92101 1.21401 0.97491 0.94840 1.00268 1.21102 0.98019 0.97976 0.96197 0.91066 0.93980 0.91824 0.90620 0.91768 0.90637 0.91454 0.90110 0.90466 0.72532 0.74714 0.99421 0.98053 0.92961 0.86409 0.83724 0.83192 0.83676 0.86127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.09 71.98 0.65 -1.47 16 2 C -0.09 -1.18 3.16 -10.79 -0.03 -1.22 16 3 C -0.14 -1.25 9.19 71.98 0.66 -0.59 16 4 C 0.02 0.36 5.61 71.98 0.40 0.77 16 5 O -0.15 -3.97 10.64 -21.41 -0.23 -4.20 16 6 N -0.56 -15.36 6.38 -174.49 -1.11 -16.48 16 7 C 0.53 17.73 8.04 87.27 0.70 18.43 16 8 O -0.53 -19.97 16.89 14.15 0.24 -19.73 16 9 C 0.52 19.23 7.75 87.27 0.68 19.91 16 10 O -0.54 -21.90 16.17 -3.22 -0.05 -21.95 16 11 N -0.68 -25.19 5.04 -447.43 -2.25 -27.44 16 12 C 0.20 8.24 2.19 44.25 0.10 8.34 16 13 H 0.08 3.57 7.49 -2.39 -0.02 3.55 16 14 C 0.03 1.84 4.68 29.85 0.14 1.98 16 15 C -0.52 -28.87 8.53 25.60 0.22 -28.65 16 16 H 0.07 3.59 6.79 -2.91 -0.02 3.57 16 17 C 0.00 0.16 5.46 84.66 0.46 0.63 16 18 N -0.93 -57.08 13.29 21.45 0.28 -56.80 16 19 Si 0.96 44.19 29.54 68.60 2.03 46.22 16 20 H -0.26 -11.60 7.11 99.48 0.71 -10.89 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.41 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C -0.08 -2.92 4.50 -19.87 -0.09 -3.01 16 24 C -0.13 -4.44 9.02 22.27 0.20 -4.24 16 25 C -0.12 -3.35 10.05 22.27 0.22 -3.12 16 26 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 27 C -0.12 -3.39 10.05 22.27 0.22 -3.17 16 28 C -0.11 -3.90 8.83 22.27 0.20 -3.70 16 29 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.79 7.82 -2.39 -0.02 0.78 16 31 H 0.06 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.07 0.51 8.14 -2.38 -0.02 0.49 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.43 9.87 8.01 -92.71 -0.74 9.13 16 39 H 0.41 13.88 6.34 -92.71 -0.59 13.29 16 40 H -0.01 -0.74 8.08 -2.39 -0.02 -0.76 16 41 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 42 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 43 H 0.12 3.78 6.95 -2.91 -0.02 3.76 16 44 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 45 H 0.15 2.72 8.06 -2.91 -0.02 2.70 16 46 H 0.15 3.13 8.06 -2.91 -0.02 3.11 16 47 H 0.12 4.01 7.84 -2.91 -0.02 3.98 16 Total: -1.00 -73.34 400.55 3.52 -69.82 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: -0.34 Total: 32.64 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 4.96 Total: -2.07 kcal Atomic # 7 Polarization: -97.64 SS G_CDS: -3.08 Total: -100.72 kcal Atomic # 8 Polarization: -45.84 SS G_CDS: -0.04 Total: -45.88 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -73.34 3.52 -69.82 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261166976.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.579 kcal (2) G-P(sol) polarization free energy of solvation -73.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds