Wall clock time and date at job start Tue Mar 31 2020 17:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09008 * 109.47047 * 251.44854 * 3 2 1 5 5 N 1.46504 * 109.47339 * 131.44919 * 3 2 1 6 6 C 1.34772 * 119.99908 * 84.99715 * 5 3 2 7 7 O 1.21347 * 120.00206 * 0.02562 * 6 5 3 8 8 C 1.49455 * 119.99842 * 180.02562 * 6 5 3 9 9 O 1.21346 * 119.99698 * 353.48362 * 8 6 5 10 10 N 1.34774 * 119.99959 * 173.49334 * 8 6 5 11 11 C 1.46925 * 120.63253 * 353.00779 * 10 8 6 12 12 C 1.53191 * 108.77699 * 126.37393 * 11 10 8 13 13 C 1.53040 * 109.30952 * 54.63337 * 12 11 10 14 14 C 1.53037 * 109.52831 * 298.64303 * 13 12 11 15 15 H 1.08994 * 109.49911 * 301.40704 * 14 13 12 16 16 C 1.50701 * 109.49446 * 181.30958 * 14 13 12 17 17 H 1.08001 * 120.00519 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99833 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00304 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 120.00040 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47411 * 59.99758 * 20 18 16 22 22 H 1.48503 * 109.47121 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46911 * 299.99660 * 20 18 16 24 24 C 1.46923 * 120.62783 * 172.99235 * 10 8 6 25 25 C 1.53002 * 109.47385 * 11.44517 * 3 2 1 26 26 H 1.09000 * 109.82342 * 300.70459 * 25 3 2 27 27 C 1.54386 * 109.83025 * 179.81455 * 25 3 2 28 28 C 1.55453 * 102.18494 * 219.18243 * 27 25 3 29 29 C 1.54950 * 100.98644 * 34.04080 * 28 27 25 30 30 O 1.43233 * 109.82979 * 61.58851 * 25 3 2 31 31 H 4.18736 * 15.03960 * 359.97438 * 4 2 1 32 32 H 0.96998 * 119.99825 * 264.99948 * 5 3 2 33 33 H 1.08997 * 109.58463 * 6.58562 * 11 10 8 34 34 H 1.09000 * 109.70205 * 246.23627 * 11 10 8 35 35 H 1.09004 * 109.49584 * 294.68498 * 12 11 10 36 36 H 1.09000 * 109.49697 * 174.58604 * 12 11 10 37 37 H 1.08999 * 109.45948 * 58.65727 * 13 12 11 38 38 H 1.08997 * 109.45700 * 178.62611 * 13 12 11 39 39 H 0.97005 * 120.00335 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.58903 * 353.41129 * 24 10 8 41 41 H 1.09007 * 109.58822 * 113.69889 * 24 10 8 42 42 H 1.08990 * 110.84867 * 337.32309 * 27 25 3 43 43 H 1.09003 * 110.84480 * 100.93848 * 27 25 3 44 44 H 1.08992 * 111.05951 * 276.12541 * 28 27 25 45 45 H 1.09001 * 111.14521 * 151.99203 * 28 27 25 46 46 H 1.09002 * 110.30735 * 204.68834 * 29 28 27 47 47 H 1.08993 * 110.39189 * 82.56580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3278 0.9743 5 7 3.1340 0.9152 -1.0353 6 6 3.2621 2.2298 -0.7672 7 8 2.9736 2.6558 0.3318 8 6 3.7593 3.1628 -1.8236 9 8 4.1592 2.7235 -2.8817 10 7 3.7638 4.4920 -1.6008 11 6 3.1444 5.0504 -0.3912 12 6 4.1713 5.9319 0.3266 13 6 4.7055 6.9833 -0.6487 14 6 5.4013 6.2872 -1.8207 15 1 6.2139 5.6659 -1.4443 16 6 5.9551 7.3236 -2.7642 17 1 5.8246 8.3740 -2.5496 18 6 6.6285 6.9308 -3.9014 19 7 6.7870 5.6518 -4.1631 20 14 7.3156 8.2155 -5.0707 21 1 8.2953 9.0674 -4.3499 22 1 7.9894 7.5394 -6.2083 23 1 6.2077 9.0608 -5.5837 24 6 4.3885 5.4101 -2.5629 25 6 3.1567 -1.4129 -0.2862 26 1 2.7866 -2.1007 0.4741 27 6 4.7005 -1.4207 -0.2927 28 6 5.0188 -2.3875 -1.4677 29 6 3.8466 -2.0763 -2.4320 30 8 2.7144 -1.8364 -1.5811 31 1 -1.0499 0.0003 -0.0005 32 1 3.3648 0.5745 -1.9137 33 1 2.8343 4.2397 0.2680 34 1 2.2766 5.6500 -0.6661 35 1 4.9955 5.3139 0.6828 36 1 3.6962 6.4285 1.1727 37 1 3.8775 7.5850 -1.0234 38 1 5.4184 7.6272 -0.1337 39 1 7.2611 5.3754 -4.9630 40 1 4.8994 4.8367 -3.3365 41 1 3.6230 6.0380 -3.0189 42 1 5.0926 -0.4239 -0.4939 43 1 5.0904 -1.8096 0.6480 44 1 4.9915 -3.4262 -1.1386 45 1 5.9784 -2.1475 -1.9255 46 1 3.6561 -2.9291 -3.0836 47 1 4.0683 -1.1896 -3.0257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261711263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:05 Heat of formation + Delta-G solvation = -43.214296 kcal Electronic energy + Delta-G solvation = -29772.226928 eV Core-core repulsion = 25729.325192 eV Total energy + Delta-G solvation = -4042.901736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85685 -39.83166 -38.24514 -36.87489 -35.59338 -33.32052 -32.68107 -32.33939 -31.72358 -30.38139 -29.74875 -26.83485 -25.44573 -24.95983 -22.74134 -22.31291 -21.80092 -21.44522 -20.34253 -18.96161 -18.39391 -17.56142 -17.15613 -16.46319 -16.41158 -15.99776 -15.61301 -15.40447 -15.02724 -14.69836 -14.55536 -14.07072 -13.81482 -13.62353 -13.58283 -13.31213 -13.16403 -12.80238 -12.59474 -12.12822 -12.09885 -11.90599 -11.78338 -11.53955 -11.42938 -11.18687 -10.97381 -10.72881 -10.65788 -10.48357 -10.45137 -10.28566 -10.07585 -9.90019 -9.81754 -9.49250 -9.22945 -9.12009 -8.54861 -8.42674 -7.83992 -6.03181 -4.11297 1.72553 2.27641 2.72948 3.07749 3.31046 3.36408 3.38196 3.44511 3.61377 3.95991 4.09304 4.17130 4.40851 4.51332 4.56122 4.67078 4.81056 4.89357 5.07895 5.20928 5.27531 5.40581 5.48431 5.51941 5.58279 5.64410 5.68915 5.80424 5.82652 5.88162 6.04940 6.25146 6.38841 6.58316 6.60197 6.66341 6.74163 6.85829 6.98743 7.03091 7.16696 7.20063 7.52149 7.57849 7.81525 7.93791 7.95448 8.14213 8.33883 8.55303 8.92489 9.54271 11.02450 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.003208 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.786211 B = 8725.485096 C = 9912.692729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.193 4.193 3 C 0.245 3.755 4 H 0.122 0.878 5 N -0.693 5.693 6 C 0.514 3.486 7 O -0.509 6.509 8 C 0.496 3.504 9 O -0.524 6.524 10 N -0.565 5.565 11 C 0.049 3.951 12 C -0.127 4.127 13 C -0.113 4.113 14 C 0.042 3.958 15 H 0.029 0.971 16 C -0.520 4.520 17 H 0.059 0.941 18 C 0.063 3.937 19 N -0.883 5.883 20 Si 0.894 3.106 21 H -0.277 1.277 22 H -0.287 1.287 23 H -0.277 1.277 24 C 0.108 3.892 25 C 0.080 3.920 26 H 0.101 0.899 27 C -0.156 4.156 28 C -0.154 4.154 29 C 0.042 3.958 30 O -0.369 6.369 31 H 0.218 0.782 32 H 0.416 0.584 33 H 0.143 0.857 34 H 0.055 0.945 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.049 0.951 38 H 0.051 0.949 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.048 0.952 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.088 0.912 46 H 0.089 0.911 47 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.681 -16.105 8.915 19.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.195 4.195 3 C 0.140 3.860 4 H 0.139 0.861 5 N -0.347 5.347 6 C 0.297 3.703 7 O -0.386 6.386 8 C 0.277 3.723 9 O -0.401 6.401 10 N -0.297 5.297 11 C -0.072 4.072 12 C -0.165 4.165 13 C -0.151 4.151 14 C 0.022 3.978 15 H 0.048 0.952 16 C -0.558 4.558 17 H 0.077 0.923 18 C -0.140 4.140 19 N -0.521 5.521 20 Si 0.722 3.278 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.202 1.202 24 C -0.011 4.011 25 C 0.022 3.978 26 H 0.118 0.882 27 C -0.194 4.194 28 C -0.192 4.192 29 C -0.034 4.034 30 O -0.289 6.289 31 H 0.234 0.766 32 H 0.253 0.747 33 H 0.159 0.841 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.066 0.934 42 H 0.106 0.894 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.107 0.893 46 H 0.107 0.893 47 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.766 -16.153 8.910 20.015 hybrid contribution 0.455 0.742 -1.053 1.366 sum -7.311 -15.412 7.856 18.780 Atomic orbital electron populations 1.24879 0.95810 0.99442 0.99548 1.23012 0.94225 1.01117 1.01104 1.18294 0.84388 0.89623 0.93690 0.86072 1.45821 1.65180 1.06638 1.17084 1.20916 0.77353 0.83278 0.88703 1.90309 1.49514 1.74075 1.24658 1.19679 0.81643 0.83900 0.87114 1.90755 1.47508 1.76390 1.25438 1.48438 1.53220 1.04710 1.23336 1.23072 0.95210 1.01209 0.87725 1.21854 0.98613 0.98020 0.98023 1.21667 0.99418 0.96965 0.97059 1.18958 0.92857 0.94064 0.91880 0.95250 1.21065 1.35440 0.92656 1.06680 0.92288 1.25051 0.95711 0.95330 0.97900 1.69859 1.41403 1.14117 1.26701 0.86625 0.79254 0.81545 0.80400 1.20252 1.21238 1.20217 1.22499 0.94931 0.91357 0.92333 1.23037 0.94343 0.92782 0.87634 0.88169 1.23276 0.93947 1.01836 1.00313 1.23284 0.99875 1.00107 0.95924 1.23535 0.85136 1.01379 0.93350 1.88520 1.30642 1.87629 1.22061 0.76551 0.74651 0.84071 0.92697 0.92330 0.92266 0.93243 0.93062 0.92584 0.85900 0.93360 0.89380 0.89226 0.90230 0.89317 0.89311 0.91480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.02 19.25 29.55 0.57 -1.45 16 2 C -0.19 -2.45 12.53 -37.12 -0.47 -2.91 16 3 C 0.24 2.82 2.24 -70.72 -0.16 2.67 16 4 H 0.12 1.33 7.58 -51.92 -0.39 0.94 16 5 N -0.69 -9.59 4.07 -56.97 -0.23 -9.82 16 6 C 0.51 8.67 7.72 -11.58 -0.09 8.58 16 7 O -0.51 -8.77 12.76 5.50 0.07 -8.70 16 8 C 0.50 10.12 7.74 -11.58 -0.09 10.03 16 9 O -0.52 -11.93 15.94 5.50 0.09 -11.84 16 10 N -0.57 -11.92 2.97 -173.29 -0.51 -12.44 16 11 C 0.05 0.90 6.27 -3.71 -0.02 0.87 16 12 C -0.13 -2.27 6.08 -26.61 -0.16 -2.43 16 13 C -0.11 -2.35 5.11 -26.69 -0.14 -2.48 16 14 C 0.04 1.03 2.25 -91.67 -0.21 0.83 16 15 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 16 C -0.52 -14.07 8.56 -34.44 -0.29 -14.37 16 17 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.88 -25.31 11.40 55.43 0.63 -24.68 16 20 Si 0.89 21.10 29.54 -169.99 -5.02 16.08 16 21 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 C 0.11 2.65 5.38 -3.73 -0.02 2.63 16 25 C 0.08 0.74 3.24 -26.00 -0.08 0.66 16 26 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 27 C -0.16 -1.24 6.44 -24.70 -0.16 -1.40 16 28 C -0.15 -1.11 7.16 -24.40 -0.17 -1.28 16 29 C 0.04 0.37 7.40 38.19 0.28 0.65 16 30 O -0.37 -4.02 10.23 -35.23 -0.36 -4.38 16 31 H 0.22 1.66 7.80 -54.09 -0.42 1.23 16 32 H 0.42 5.73 6.68 -40.82 -0.27 5.46 16 33 H 0.14 2.49 3.78 -56.76 -0.21 2.28 16 34 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.26 7.28 8.31 -40.82 -0.34 6.95 16 40 H 0.12 3.42 5.18 -51.93 -0.27 3.15 16 41 H 0.05 1.18 8.14 -51.92 -0.42 0.75 16 42 H 0.09 0.84 7.17 -51.93 -0.37 0.47 16 43 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 45 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.07 0.64 7.53 -51.93 -0.39 0.25 16 LS Contribution 380.39 15.07 5.73 5.73 Total: -1.00 -31.62 380.39 -7.86 -39.48 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -6.95 Total: 8.35 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: -1.31 Total: 2.22 kcal Atomic # 7 Polarization: -46.83 SS G_CDS: -0.12 Total: -46.94 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -0.20 Total: -24.92 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.62 -7.86 -39.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261711263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.737 kcal (2) G-P(sol) polarization free energy of solvation -31.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds