Wall clock time and date at job start Tue Mar 31 2020 17:56:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09008 * 109.47047 * 251.44854 * 3 2 1 5 5 N 1.46504 * 109.47339 * 131.44919 * 3 2 1 6 6 C 1.34772 * 119.99908 * 84.99715 * 5 3 2 7 7 O 1.21347 * 120.00206 * 0.02562 * 6 5 3 8 8 C 1.49455 * 119.99842 * 180.02562 * 6 5 3 9 9 O 1.21346 * 119.99698 * 353.48362 * 8 6 5 10 10 N 1.34774 * 119.99959 * 173.49334 * 8 6 5 11 11 C 1.46925 * 120.63253 * 353.00779 * 10 8 6 12 12 C 1.53191 * 108.77699 * 126.37393 * 11 10 8 13 13 C 1.53040 * 109.30952 * 54.63337 * 12 11 10 14 14 C 1.53037 * 109.52831 * 298.64303 * 13 12 11 15 15 H 1.08994 * 109.49911 * 301.40704 * 14 13 12 16 16 C 1.50701 * 109.49446 * 181.30958 * 14 13 12 17 17 H 1.08001 * 120.00519 * 0.02562 * 16 14 13 18 18 C 1.37877 * 119.99833 * 180.02562 * 16 14 13 19 19 N 1.31511 * 120.00304 * 0.02562 * 18 16 14 20 20 Si 1.86807 * 120.00040 * 180.02562 * 18 16 14 21 21 H 1.48494 * 109.47411 * 59.99758 * 20 18 16 22 22 H 1.48503 * 109.47121 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.46911 * 299.99660 * 20 18 16 24 24 C 1.46923 * 120.62783 * 172.99235 * 10 8 6 25 25 C 1.53002 * 109.47385 * 11.44517 * 3 2 1 26 26 H 1.09000 * 109.82342 * 300.70459 * 25 3 2 27 27 C 1.54386 * 109.83025 * 179.81455 * 25 3 2 28 28 C 1.55453 * 102.18494 * 219.18243 * 27 25 3 29 29 C 1.54950 * 100.98644 * 34.04080 * 28 27 25 30 30 O 1.43233 * 109.82979 * 61.58851 * 25 3 2 31 31 H 4.18736 * 15.03960 * 359.97438 * 4 2 1 32 32 H 0.96998 * 119.99825 * 264.99948 * 5 3 2 33 33 H 1.08997 * 109.58463 * 6.58562 * 11 10 8 34 34 H 1.09000 * 109.70205 * 246.23627 * 11 10 8 35 35 H 1.09004 * 109.49584 * 294.68498 * 12 11 10 36 36 H 1.09000 * 109.49697 * 174.58604 * 12 11 10 37 37 H 1.08999 * 109.45948 * 58.65727 * 13 12 11 38 38 H 1.08997 * 109.45700 * 178.62611 * 13 12 11 39 39 H 0.97005 * 120.00335 * 180.02562 * 19 18 16 40 40 H 1.09003 * 109.58903 * 353.41129 * 24 10 8 41 41 H 1.09007 * 109.58822 * 113.69889 * 24 10 8 42 42 H 1.08990 * 110.84867 * 337.32309 * 27 25 3 43 43 H 1.09003 * 110.84480 * 100.93848 * 27 25 3 44 44 H 1.08992 * 111.05951 * 276.12541 * 28 27 25 45 45 H 1.09001 * 111.14521 * 151.99203 * 28 27 25 46 46 H 1.09002 * 110.30735 * 204.68834 * 29 28 27 47 47 H 1.08993 * 110.39189 * 82.56580 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0092 0.3278 0.9743 5 7 3.1340 0.9152 -1.0353 6 6 3.2621 2.2298 -0.7672 7 8 2.9736 2.6558 0.3318 8 6 3.7593 3.1628 -1.8236 9 8 4.1592 2.7235 -2.8817 10 7 3.7638 4.4920 -1.6008 11 6 3.1444 5.0504 -0.3912 12 6 4.1713 5.9319 0.3266 13 6 4.7055 6.9833 -0.6487 14 6 5.4013 6.2872 -1.8207 15 1 6.2139 5.6659 -1.4443 16 6 5.9551 7.3236 -2.7642 17 1 5.8246 8.3740 -2.5496 18 6 6.6285 6.9308 -3.9014 19 7 6.7870 5.6518 -4.1631 20 14 7.3156 8.2155 -5.0707 21 1 8.2953 9.0674 -4.3499 22 1 7.9894 7.5394 -6.2083 23 1 6.2077 9.0608 -5.5837 24 6 4.3885 5.4101 -2.5629 25 6 3.1567 -1.4129 -0.2862 26 1 2.7866 -2.1007 0.4741 27 6 4.7005 -1.4207 -0.2927 28 6 5.0188 -2.3875 -1.4677 29 6 3.8466 -2.0763 -2.4320 30 8 2.7144 -1.8364 -1.5811 31 1 -1.0499 0.0003 -0.0005 32 1 3.3648 0.5745 -1.9137 33 1 2.8343 4.2397 0.2680 34 1 2.2766 5.6500 -0.6661 35 1 4.9955 5.3139 0.6828 36 1 3.6962 6.4285 1.1727 37 1 3.8775 7.5850 -1.0234 38 1 5.4184 7.6272 -0.1337 39 1 7.2611 5.3754 -4.9630 40 1 4.8994 4.8367 -3.3365 41 1 3.6230 6.0380 -3.0189 42 1 5.0926 -0.4239 -0.4939 43 1 5.0904 -1.8096 0.6480 44 1 4.9915 -3.4262 -1.1386 45 1 5.9784 -2.1475 -1.9255 46 1 3.6561 -2.9291 -3.0836 47 1 4.0683 -1.1896 -3.0257 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261711263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:04 Heat of formation + Delta-G solvation = -63.709783 kcal Electronic energy + Delta-G solvation = -29773.115679 eV Core-core repulsion = 25729.325192 eV Total energy + Delta-G solvation = -4043.790487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.16602 -40.86021 -39.66110 -38.56843 -36.70265 -35.21364 -33.72543 -33.42989 -33.06976 -31.59041 -31.21023 -28.06670 -27.08741 -26.54866 -24.20157 -23.51864 -22.99343 -22.22426 -21.81370 -20.56629 -19.40936 -19.00269 -18.39545 -18.05782 -17.58987 -17.17630 -16.92946 -16.68076 -16.48325 -16.16979 -15.85576 -15.49536 -15.19022 -14.91778 -14.74787 -14.49851 -14.45068 -14.34284 -13.94335 -13.84980 -13.49154 -13.08187 -12.85749 -12.76388 -12.62503 -12.53013 -12.30664 -12.19196 -12.16547 -11.82447 -11.73183 -11.67747 -11.53317 -11.29015 -11.17536 -10.99269 -10.75652 -10.55034 -10.52170 -10.05162 -9.58377 -8.12713 -6.29196 0.25414 1.07519 1.42269 1.43606 1.51681 1.83226 1.90510 2.09288 2.41497 2.61722 2.75759 3.15243 3.23578 3.29687 3.49026 3.76564 3.92850 4.12016 4.12269 4.17362 4.21253 4.29319 4.34908 4.43558 4.56857 4.68836 4.73943 4.79808 4.80288 4.85586 4.93345 5.00445 5.02499 5.04575 5.12698 5.21562 5.22654 5.25895 5.35784 5.48081 5.55718 5.81210 5.87223 5.92849 5.96237 6.27999 6.38993 6.61572 6.66640 6.81268 6.92062 7.40702 8.91253 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.015084 B = 0.003208 C = 0.002824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.786211 B = 8725.485096 C = 9912.692729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.234 4.234 3 C 0.241 3.759 4 H 0.128 0.872 5 N -0.678 5.678 6 C 0.525 3.475 7 O -0.511 6.511 8 C 0.487 3.513 9 O -0.557 6.557 10 N -0.572 5.572 11 C 0.048 3.952 12 C -0.119 4.119 13 C -0.107 4.107 14 C 0.040 3.960 15 H -0.009 1.009 16 C -0.538 4.538 17 H 0.063 0.937 18 C 0.013 3.987 19 N -0.915 5.915 20 Si 0.959 3.041 21 H -0.269 1.269 22 H -0.287 1.287 23 H -0.268 1.268 24 C 0.122 3.878 25 C 0.083 3.917 26 H 0.123 0.877 27 C -0.155 4.155 28 C -0.147 4.147 29 C 0.035 3.965 30 O -0.389 6.389 31 H 0.248 0.752 32 H 0.415 0.585 33 H 0.154 0.846 34 H 0.070 0.930 35 H 0.048 0.952 36 H 0.098 0.902 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.262 0.738 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.067 0.933 43 H 0.113 0.887 44 H 0.098 0.902 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.792 -16.526 10.446 21.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.235 4.235 3 C 0.138 3.862 4 H 0.145 0.855 5 N -0.331 5.331 6 C 0.307 3.693 7 O -0.389 6.389 8 C 0.269 3.731 9 O -0.436 6.436 10 N -0.303 5.303 11 C -0.072 4.072 12 C -0.157 4.157 13 C -0.145 4.145 14 C 0.021 3.979 15 H 0.009 0.991 16 C -0.576 4.576 17 H 0.081 0.919 18 C -0.187 4.187 19 N -0.553 5.553 20 Si 0.784 3.216 21 H -0.194 1.194 22 H -0.212 1.212 23 H -0.193 1.193 24 C 0.000 4.000 25 C 0.025 3.975 26 H 0.140 0.860 27 C -0.192 4.192 28 C -0.185 4.185 29 C -0.041 4.041 30 O -0.308 6.308 31 H 0.264 0.736 32 H 0.253 0.747 33 H 0.170 0.830 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.117 0.883 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.103 0.897 41 H 0.061 0.939 42 H 0.086 0.914 43 H 0.132 0.868 44 H 0.117 0.883 45 H 0.109 0.891 46 H 0.121 0.879 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -8.896 -16.590 10.475 21.543 hybrid contribution 0.749 0.813 -1.531 1.888 sum -8.147 -15.777 8.944 19.882 Atomic orbital electron populations 1.25741 0.96770 0.97972 0.97937 1.23388 0.94992 1.02556 1.02604 1.18594 0.84431 0.90242 0.92951 0.85462 1.45792 1.63833 1.05749 1.17704 1.20073 0.77896 0.83803 0.87563 1.90282 1.50192 1.74266 1.24160 1.20368 0.80921 0.84199 0.87626 1.90727 1.48781 1.76998 1.27093 1.48459 1.53250 1.04885 1.23749 1.23308 0.95472 1.01842 0.86557 1.21817 0.98405 0.97145 0.98353 1.21562 0.99355 0.97501 0.96037 1.18889 0.92220 0.93545 0.93227 0.99095 1.21463 1.35594 0.93294 1.07257 0.91923 1.25866 0.96074 0.97131 0.99599 1.70036 1.42129 1.16066 1.27072 0.85598 0.78753 0.79069 0.78179 1.19385 1.21242 1.19348 1.21974 0.94518 0.91236 0.92264 1.23159 0.95047 0.91611 0.87645 0.85959 1.23290 0.93047 1.01092 1.01816 1.23282 0.99156 1.00970 0.95072 1.23646 0.85529 1.01230 0.93675 1.88499 1.31791 1.87640 1.22869 0.73569 0.74715 0.82957 0.91217 0.93308 0.88348 0.92525 0.92673 0.92916 0.89674 0.93896 0.91445 0.86821 0.88315 0.89104 0.87933 0.93147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 19.25 74.32 1.43 -1.98 16 2 C -0.23 -5.59 12.53 31.12 0.39 -5.20 16 3 C 0.24 5.32 2.24 43.19 0.10 5.42 16 4 H 0.13 2.63 7.58 -2.38 -0.02 2.62 16 5 N -0.68 -18.78 4.07 -452.53 -1.84 -20.62 16 6 C 0.52 17.69 7.72 87.27 0.67 18.37 16 7 O -0.51 -17.10 12.76 -3.24 -0.04 -17.14 16 8 C 0.49 20.47 7.74 87.27 0.68 21.15 16 9 O -0.56 -26.68 15.94 -3.23 -0.05 -26.73 16 10 N -0.57 -24.59 2.97 -820.54 -2.44 -27.03 16 11 C 0.05 1.70 6.27 86.36 0.54 2.24 16 12 C -0.12 -4.07 6.08 30.67 0.19 -3.88 16 13 C -0.11 -4.35 5.11 30.62 0.16 -4.19 16 14 C 0.04 2.07 2.25 -11.47 -0.03 2.04 16 15 H -0.01 -0.53 8.14 -2.39 -0.02 -0.55 16 16 C -0.54 -29.65 8.56 25.60 0.22 -29.43 16 17 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 18 C 0.01 0.72 5.30 84.66 0.45 1.17 16 19 N -0.91 -54.48 11.40 21.45 0.24 -54.23 16 20 Si 0.96 43.82 29.54 68.60 2.03 45.84 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 C 0.12 6.16 5.38 86.35 0.46 6.63 16 25 C 0.08 1.42 3.24 31.07 0.10 1.52 16 26 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 27 C -0.15 -2.24 6.44 31.91 0.21 -2.03 16 28 C -0.15 -1.91 7.16 32.11 0.23 -1.68 16 29 C 0.04 0.60 7.40 72.65 0.54 1.14 16 30 O -0.39 -8.09 10.23 -148.98 -1.52 -9.61 16 31 H 0.25 3.03 7.80 -4.42 -0.03 2.99 16 32 H 0.42 11.76 6.68 -92.71 -0.62 11.14 16 33 H 0.15 5.12 3.78 -78.83 -0.30 4.82 16 34 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 36 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 37 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.26 14.99 8.31 -92.70 -0.77 14.22 16 40 H 0.09 5.01 5.18 -2.39 -0.01 5.00 16 41 H 0.04 2.16 8.14 -2.38 -0.02 2.14 16 42 H 0.07 1.27 7.17 -2.39 -0.02 1.25 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.10 1.42 8.14 -2.39 -0.02 1.41 16 47 H 0.05 1.01 7.53 -2.39 -0.02 0.99 16 Total: -1.00 -70.68 380.39 2.78 -67.90 By element: Atomic # 1 Polarization: 30.27 SS G_CDS: 0.08 Total: 30.35 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.33 Total: 11.27 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -4.04 Total: -101.88 kcal Atomic # 8 Polarization: -51.86 SS G_CDS: -1.62 Total: -53.48 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.84 kcal Total: -70.68 2.78 -67.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261711263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.190 kcal (2) G-P(sol) polarization free energy of solvation -70.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds