Wall clock time and date at job start Tue Mar 31 2020 18:42:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00253 * 2 1 4 4 N 1.46496 * 109.47536 * 124.99675 * 3 2 1 5 5 C 1.34776 * 120.00173 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99651 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00320 * 179.97438 * 5 4 3 8 8 N 1.46894 * 109.47075 * 179.97438 * 7 5 4 9 9 C 1.46903 * 110.99905 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47169 * 60.00504 * 10 9 8 12 12 O 1.42893 * 109.47127 * 300.00125 * 10 9 8 13 13 C 1.53002 * 109.46926 * 179.97438 * 10 9 8 14 14 O 1.42902 * 109.46972 * 184.99925 * 13 10 9 15 15 C 1.35675 * 117.00271 * 180.02562 * 14 13 10 16 16 C 1.39306 * 119.82220 * 180.02562 * 15 14 13 17 17 C 1.36436 * 120.18886 * 179.72675 * 16 15 14 18 18 C 1.40835 * 119.80911 * 0.27535 * 17 16 15 19 19 C 1.41212 * 120.17588 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00342 * 204.53726 * 19 18 17 21 21 C 1.39888 * 120.00291 * 24.54342 * 19 18 17 22 22 N 1.30881 * 120.00110 * 17.93888 * 21 19 18 23 23 Si 1.86803 * 119.99833 * 197.94387 * 21 19 18 24 24 H 1.48499 * 109.47348 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47114 * 119.99694 * 23 21 19 26 26 H 1.48496 * 109.46987 * 239.99470 * 23 21 19 27 27 C 1.40825 * 119.64216 * 359.97438 * 18 17 16 28 28 C 1.36442 * 119.81239 * 0.02562 * 27 18 17 29 29 H 1.08003 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99948 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00059 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46876 * 4.99658 * 3 2 1 33 33 H 1.09002 * 109.46978 * 245.00112 * 3 2 1 34 34 H 0.97004 * 120.00192 * 359.97438 * 4 3 2 35 35 H 1.09008 * 109.46960 * 59.99938 * 7 5 4 36 36 H 1.09004 * 109.46874 * 300.00487 * 7 5 4 37 37 H 1.00898 * 111.00375 * 56.05367 * 8 7 5 38 38 H 1.09004 * 109.47075 * 59.99493 * 9 8 7 39 39 H 1.09001 * 109.47106 * 300.00407 * 9 8 7 40 40 H 0.96709 * 114.00076 * 299.99360 * 12 10 9 41 41 H 1.08998 * 109.47200 * 65.00307 * 13 10 9 42 42 H 1.08996 * 109.47334 * 304.99796 * 13 10 9 43 43 H 1.08003 * 119.90618 * 359.97438 * 16 15 14 44 44 H 1.07995 * 120.09717 * 180.29384 * 17 16 15 45 45 H 0.97005 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.09304 * 180.02562 * 27 18 17 47 47 H 1.08003 * 119.90556 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7137 3.3563 0.5787 7 6 4.7348 2.4370 2.4976 8 7 5.4693 3.7091 2.4974 9 6 6.4138 3.7718 3.6208 10 6 7.1588 5.1077 3.5869 11 1 6.4426 5.9253 3.6684 12 8 7.8748 5.2226 2.3556 13 6 8.1420 5.1732 4.7573 14 8 8.7531 6.4644 4.7944 15 6 9.6581 6.6896 5.7798 16 6 10.2890 7.9282 5.8712 17 6 11.1962 8.1646 6.8625 18 6 11.4984 7.1501 7.7914 19 6 12.4357 7.3866 8.8208 20 1 12.9625 6.5588 9.2721 21 6 12.6818 8.6930 9.2562 22 7 11.8266 9.6456 8.9840 23 14 14.2312 9.0779 10.2261 24 1 15.0275 7.8366 10.4001 25 1 15.0379 10.0850 9.4911 26 1 13.8598 9.6180 11.5585 27 6 10.8600 5.8991 7.6888 28 6 9.9552 5.6790 6.6915 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5748 1.7357 35 1 5.4400 1.6106 2.4083 36 1 4.1766 2.3393 3.4288 37 1 4.8345 4.4932 2.5142 38 1 7.1303 2.9544 3.5392 39 1 5.8677 3.6836 4.5600 40 1 8.5312 4.5263 2.2158 41 1 8.9107 4.4111 4.6292 42 1 7.6078 4.9971 5.6909 43 1 10.0565 8.7049 5.1577 44 1 11.6809 9.1269 6.9347 45 1 11.9975 10.5516 9.2856 46 1 11.0859 5.1161 8.3975 47 1 9.4650 4.7200 6.6112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262566459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:38 Heat of formation + Delta-G solvation = -81.379535 kcal Electronic energy + Delta-G solvation = -26591.451445 eV Core-core repulsion = 22546.894740 eV Total energy + Delta-G solvation = -4044.556705 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.09488 -39.06052 -37.74384 -36.41769 -36.07540 -35.03994 -33.30889 -33.27663 -30.86891 -29.70764 -29.03433 -28.08158 -26.08107 -24.78219 -23.76113 -22.02550 -21.15293 -20.72439 -20.57237 -20.31996 -17.83076 -17.35426 -17.00868 -16.83899 -16.65024 -16.14684 -15.99666 -15.63015 -15.19701 -14.90142 -14.56496 -14.32181 -14.03664 -13.97321 -13.88521 -13.54143 -13.27001 -12.99490 -12.79308 -12.53207 -12.24038 -12.14523 -12.12763 -11.75444 -11.74288 -11.37935 -11.15644 -10.92722 -10.78627 -10.62410 -10.49737 -10.09465 -9.98582 -9.82408 -9.81106 -9.48510 -9.33063 -9.01700 -8.74582 -7.63767 -7.02678 -6.71873 -4.25153 1.47872 2.29412 2.77000 2.77534 2.95507 3.09310 3.14352 3.20882 3.59490 3.95692 4.18263 4.20145 4.39906 4.49592 4.51552 4.62617 4.79357 4.83742 4.95109 4.97791 5.02623 5.19942 5.22252 5.25710 5.27283 5.40757 5.61762 5.67701 5.85816 5.92461 6.02451 6.05790 6.10158 6.23457 6.46881 6.73881 6.95477 6.98274 7.09898 7.11593 7.19042 7.47100 7.56290 7.79101 7.81036 7.85898 8.01292 8.21088 8.46067 8.66099 8.90467 8.99315 10.22506 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.048333 B = 0.001393 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.174575 B =20093.025411 C =20376.875482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.178 4.178 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.511 3.489 6 O -0.520 6.520 7 C 0.041 3.959 8 N -0.662 5.662 9 C 0.031 3.969 10 C 0.115 3.885 11 H 0.104 0.896 12 O -0.537 6.537 13 C 0.039 3.961 14 O -0.316 6.316 15 C -0.009 4.009 16 C -0.119 4.119 17 C -0.133 4.133 18 C 0.087 3.913 19 C -0.464 4.464 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.799 5.799 23 Si 0.906 3.094 24 H -0.261 1.261 25 H -0.272 1.272 26 H -0.275 1.275 27 C -0.199 4.199 28 C -0.168 4.168 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.116 0.884 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.401 0.599 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.354 0.646 38 H 0.080 0.920 39 H 0.044 0.956 40 H 0.371 0.629 41 H 0.053 0.947 42 H 0.056 0.944 43 H 0.098 0.902 44 H 0.126 0.874 45 H 0.279 0.721 46 H 0.094 0.906 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.695 -18.306 -11.640 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.196 4.196 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.296 3.704 6 O -0.394 6.394 7 C -0.091 4.091 8 N -0.296 5.296 9 C -0.099 4.099 10 C 0.055 3.945 11 H 0.122 0.878 12 O -0.341 6.341 13 C -0.038 4.038 14 O -0.232 6.232 15 C -0.052 4.052 16 C -0.137 4.137 17 C -0.152 4.152 18 C 0.085 3.915 19 C -0.494 4.494 20 H 0.095 0.905 21 C -0.142 4.142 22 N -0.425 5.425 23 Si 0.731 3.269 24 H -0.185 1.185 25 H -0.197 1.197 26 H -0.201 1.201 27 C -0.219 4.219 28 C -0.187 4.187 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.134 0.866 32 H 0.089 0.911 33 H 0.095 0.905 34 H 0.235 0.765 35 H 0.121 0.879 36 H 0.077 0.923 37 H 0.174 0.826 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.217 0.783 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.116 0.884 44 H 0.143 0.857 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.748 -16.889 -12.814 27.648 hybrid contribution 0.320 -0.909 1.891 2.122 sum -17.428 -17.797 -10.923 27.199 Atomic orbital electron populations 1.24008 0.95805 1.02523 0.97938 1.23006 0.96248 0.98096 1.02266 1.20397 0.91793 0.95533 0.89919 1.45978 1.41412 1.20249 1.31067 1.20649 0.80688 0.82345 0.86686 1.90755 1.66991 1.35116 1.46522 1.21809 0.96081 0.95701 0.95540 1.59984 1.21372 1.03101 1.45100 1.22609 0.96176 0.99096 0.91970 1.21817 0.92659 0.96398 0.83669 0.87828 1.86661 1.55367 1.54174 1.37920 1.23096 0.95759 0.86729 0.98253 1.85894 1.55589 1.31301 1.50422 1.18630 0.97750 0.95843 0.92995 1.19849 0.99621 0.93922 1.00353 1.20985 0.99610 1.00788 0.93830 1.17600 0.91199 0.90789 0.91896 1.19488 1.20259 0.92849 1.16781 0.90541 1.25873 0.96809 0.96049 0.95424 1.69844 1.32409 1.02520 1.37709 0.86299 0.81976 0.79367 0.79282 1.18484 1.19723 1.20097 1.20552 1.01683 0.99002 1.00633 1.20386 1.02831 0.96921 0.98585 0.88115 0.87811 0.86636 0.91070 0.90545 0.76498 0.87940 0.92252 0.82604 0.90138 0.93810 0.78272 0.92851 0.92554 0.88404 0.85660 0.90967 0.88797 0.88979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.59 14.32 29.02 0.42 -0.17 16 2 C -0.18 -0.71 9.63 -36.02 -0.35 -1.05 16 3 C 0.15 0.89 6.11 -5.19 -0.03 0.86 16 4 N -0.73 -4.35 5.55 -61.47 -0.34 -4.69 16 5 C 0.51 4.63 7.87 -10.99 -0.09 4.54 16 6 O -0.52 -7.16 16.20 5.55 0.09 -7.07 16 7 C 0.04 0.29 6.17 -4.98 -0.03 0.26 16 8 N -0.66 -6.57 5.99 -115.06 -0.69 -7.26 16 9 C 0.03 0.28 5.35 -3.82 -0.02 0.26 16 10 C 0.11 1.45 3.45 -26.73 -0.09 1.36 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 12 O -0.54 -7.72 13.17 -40.06 -0.53 -8.25 16 13 C 0.04 0.59 4.37 37.16 0.16 0.75 16 14 O -0.32 -6.54 10.09 -23.55 -0.24 -6.77 16 15 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 16 C -0.12 -2.92 9.92 -39.83 -0.40 -3.32 16 17 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 18 C 0.09 2.34 5.57 -106.81 -0.60 1.75 16 19 C -0.46 -12.34 9.04 -37.84 -0.34 -12.68 16 20 H 0.08 1.96 7.91 -52.49 -0.41 1.54 16 21 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 22 N -0.80 -20.78 10.96 55.54 0.61 -20.17 16 23 Si 0.91 18.71 29.60 -169.99 -5.03 13.68 16 24 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 25 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 26 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 27 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 28 C -0.17 -3.78 8.96 -39.83 -0.36 -4.14 16 29 H 0.10 0.35 7.84 -52.48 -0.41 -0.06 16 30 H 0.10 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.12 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.07 0.50 7.79 -51.92 -0.40 0.09 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.40 1.22 8.46 -40.82 -0.35 0.87 16 35 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 36 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 37 H 0.35 3.82 8.43 -39.29 -0.33 3.49 16 38 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.37 4.10 9.05 45.56 0.41 4.51 16 41 H 0.05 0.75 7.63 -51.93 -0.40 0.35 16 42 H 0.06 0.80 7.66 -51.93 -0.40 0.41 16 43 H 0.10 2.25 8.06 -52.48 -0.42 1.83 16 44 H 0.13 3.38 6.16 -52.49 -0.32 3.06 16 45 H 0.28 6.60 8.30 -40.82 -0.34 6.26 16 46 H 0.09 2.14 8.06 -52.49 -0.42 1.72 16 47 H 0.09 1.76 6.27 -52.48 -0.33 1.43 16 LS Contribution 400.45 15.07 6.03 6.03 Total: -1.00 -33.43 400.45 -9.19 -42.62 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.30 Total: 11.23 kcal Atomic # 6 Polarization: -16.56 SS G_CDS: -2.79 Total: -19.35 kcal Atomic # 7 Polarization: -31.70 SS G_CDS: -0.42 Total: -32.12 kcal Atomic # 8 Polarization: -21.42 SS G_CDS: -0.68 Total: -22.09 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.43 -9.19 -42.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262566459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.765 kcal (2) G-P(sol) polarization free energy of solvation -33.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds