Wall clock time and date at job start Tue Mar 31 2020 18:42:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50703 * 120.00253 * 2 1 4 4 N 1.46496 * 109.47536 * 124.99675 * 3 2 1 5 5 C 1.34776 * 120.00173 * 180.02562 * 4 3 2 6 6 O 1.21284 * 119.99651 * 0.02562 * 5 4 3 7 7 C 1.50699 * 120.00320 * 179.97438 * 5 4 3 8 8 N 1.46894 * 109.47075 * 179.97438 * 7 5 4 9 9 C 1.46903 * 110.99905 * 180.02562 * 8 7 5 10 10 C 1.52997 * 109.47270 * 179.97438 * 9 8 7 11 11 H 1.09003 * 109.47169 * 60.00504 * 10 9 8 12 12 O 1.42893 * 109.47127 * 300.00125 * 10 9 8 13 13 C 1.53002 * 109.46926 * 179.97438 * 10 9 8 14 14 O 1.42902 * 109.46972 * 184.99925 * 13 10 9 15 15 C 1.35675 * 117.00271 * 180.02562 * 14 13 10 16 16 C 1.39306 * 119.82220 * 180.02562 * 15 14 13 17 17 C 1.36436 * 120.18886 * 179.72675 * 16 15 14 18 18 C 1.40835 * 119.80911 * 0.27535 * 17 16 15 19 19 C 1.41212 * 120.17588 * 180.02562 * 18 17 16 20 20 H 1.08002 * 120.00342 * 204.53726 * 19 18 17 21 21 C 1.39888 * 120.00291 * 24.54342 * 19 18 17 22 22 N 1.30881 * 120.00110 * 17.93888 * 21 19 18 23 23 Si 1.86803 * 119.99833 * 197.94387 * 21 19 18 24 24 H 1.48499 * 109.47348 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47114 * 119.99694 * 23 21 19 26 26 H 1.48496 * 109.46987 * 239.99470 * 23 21 19 27 27 C 1.40825 * 119.64216 * 359.97438 * 18 17 16 28 28 C 1.36442 * 119.81239 * 0.02562 * 27 18 17 29 29 H 1.08003 * 120.00267 * 0.02562 * 1 2 3 30 30 H 1.07999 * 119.99948 * 180.02562 * 1 2 3 31 31 H 1.07997 * 120.00059 * 179.97438 * 2 1 3 32 32 H 1.09008 * 109.46876 * 4.99658 * 3 2 1 33 33 H 1.09002 * 109.46978 * 245.00112 * 3 2 1 34 34 H 0.97004 * 120.00192 * 359.97438 * 4 3 2 35 35 H 1.09008 * 109.46960 * 59.99938 * 7 5 4 36 36 H 1.09004 * 109.46874 * 300.00487 * 7 5 4 37 37 H 1.00898 * 111.00375 * 56.05367 * 8 7 5 38 38 H 1.09004 * 109.47075 * 59.99493 * 9 8 7 39 39 H 1.09001 * 109.47106 * 300.00407 * 9 8 7 40 40 H 0.96709 * 114.00076 * 299.99360 * 12 10 9 41 41 H 1.08998 * 109.47200 * 65.00307 * 13 10 9 42 42 H 1.08996 * 109.47334 * 304.99796 * 13 10 9 43 43 H 1.08003 * 119.90618 * 359.97438 * 16 15 14 44 44 H 1.07995 * 120.09717 * 180.29384 * 17 16 15 45 45 H 0.97005 * 119.99879 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.09304 * 180.02562 * 27 18 17 47 47 H 1.08003 * 119.90556 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9937 1.3320 1.1314 5 6 3.7783 2.4091 1.3334 6 8 3.7137 3.3563 0.5787 7 6 4.7348 2.4370 2.4976 8 7 5.4693 3.7091 2.4974 9 6 6.4138 3.7718 3.6208 10 6 7.1588 5.1077 3.5869 11 1 6.4426 5.9253 3.6684 12 8 7.8748 5.2226 2.3556 13 6 8.1420 5.1732 4.7573 14 8 8.7531 6.4644 4.7944 15 6 9.6581 6.6896 5.7798 16 6 10.2890 7.9282 5.8712 17 6 11.1962 8.1646 6.8625 18 6 11.4984 7.1501 7.7914 19 6 12.4357 7.3866 8.8208 20 1 12.9625 6.5588 9.2721 21 6 12.6818 8.6930 9.2562 22 7 11.8266 9.6456 8.9840 23 14 14.2312 9.0779 10.2261 24 1 15.0275 7.8366 10.4001 25 1 15.0379 10.0850 9.4911 26 1 13.8598 9.6180 11.5585 27 6 10.8600 5.8991 7.6888 28 6 9.9552 5.6790 6.6915 29 1 -0.5401 0.9353 -0.0004 30 1 -0.5400 -0.9353 0.0004 31 1 1.8500 -0.9353 0.0004 32 1 1.3586 2.1317 0.0895 33 1 2.6213 1.4026 -0.9314 34 1 3.0446 0.5748 1.7357 35 1 5.4400 1.6106 2.4083 36 1 4.1766 2.3393 3.4288 37 1 4.8345 4.4932 2.5142 38 1 7.1303 2.9544 3.5392 39 1 5.8677 3.6836 4.5600 40 1 8.5312 4.5263 2.2158 41 1 8.9107 4.4111 4.6292 42 1 7.6078 4.9971 5.6909 43 1 10.0565 8.7049 5.1577 44 1 11.6809 9.1269 6.9347 45 1 11.9975 10.5516 9.2856 46 1 11.0859 5.1161 8.3975 47 1 9.4650 4.7200 6.6112 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262566459.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:37 Heat of formation + Delta-G solvation = -107.301050 kcal Electronic energy + Delta-G solvation = -26592.575486 eV Core-core repulsion = 22546.894740 eV Total energy + Delta-G solvation = -4045.680746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.80864 -40.59016 -38.99608 -37.76802 -36.85394 -35.88336 -35.16810 -33.75844 -32.09723 -31.34359 -30.83475 -28.91897 -27.01427 -26.33909 -24.70147 -23.18899 -22.44400 -22.23207 -21.68082 -20.79063 -19.24643 -18.82680 -18.24537 -17.60976 -17.47759 -17.17908 -17.01633 -16.78434 -16.34313 -15.91271 -15.72196 -15.54639 -15.29418 -14.99807 -14.76237 -14.74282 -14.09571 -14.06859 -14.02831 -13.91510 -13.59666 -13.47752 -13.18118 -13.00118 -12.82674 -12.76648 -12.57861 -12.36980 -12.06454 -11.91074 -11.68161 -11.56648 -11.24992 -11.11487 -10.89140 -10.86028 -10.51537 -10.05162 -9.55128 -9.38939 -8.91516 -8.58838 -6.22023 0.95492 1.03696 1.16012 1.40503 1.51606 1.55721 1.62936 2.17687 2.23522 2.53900 2.73511 3.28388 3.59676 3.71382 3.79820 3.87766 3.94282 4.03443 4.07852 4.14356 4.30353 4.33759 4.37555 4.44059 4.45760 4.49751 4.56142 4.67109 4.74542 4.87900 4.99096 5.04136 5.08677 5.22849 5.29322 5.36065 5.59944 5.63441 5.65222 5.76705 5.86638 5.89384 6.06910 6.22199 6.27363 6.57919 6.58166 6.82126 6.92754 6.96042 7.11915 7.26874 8.37805 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.048333 B = 0.001393 C = 0.001374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.174575 B =20093.025411 C =20376.875482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.179 4.179 3 C 0.145 3.855 4 N -0.716 5.716 5 C 0.506 3.494 6 O -0.577 6.577 7 C 0.046 3.954 8 N -0.684 5.684 9 C 0.044 3.956 10 C 0.119 3.881 11 H 0.089 0.911 12 O -0.562 6.562 13 C 0.031 3.969 14 O -0.333 6.333 15 C 0.000 4.000 16 C -0.136 4.136 17 C -0.152 4.152 18 C 0.054 3.946 19 C -0.499 4.499 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.833 5.833 23 Si 0.981 3.019 24 H -0.257 1.257 25 H -0.266 1.266 26 H -0.267 1.267 27 C -0.207 4.207 28 C -0.163 4.163 29 H 0.097 0.903 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.058 0.942 33 H 0.062 0.938 34 H 0.418 0.582 35 H 0.125 0.875 36 H 0.088 0.912 37 H 0.345 0.655 38 H 0.099 0.901 39 H 0.063 0.937 40 H 0.384 0.616 41 H 0.070 0.930 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.108 0.892 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 -21.134 -10.978 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.022 3.978 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.455 6.455 7 C -0.086 4.086 8 N -0.317 5.317 9 C -0.085 4.085 10 C 0.060 3.940 11 H 0.107 0.893 12 O -0.368 6.368 13 C -0.046 4.046 14 O -0.249 6.249 15 C -0.044 4.044 16 C -0.155 4.155 17 C -0.172 4.172 18 C 0.052 3.948 19 C -0.529 4.529 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.460 5.460 23 Si 0.802 3.198 24 H -0.180 1.180 25 H -0.191 1.191 26 H -0.192 1.192 27 C -0.226 4.226 28 C -0.182 4.182 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.255 0.745 35 H 0.143 0.857 36 H 0.105 0.895 37 H 0.163 0.837 38 H 0.117 0.883 39 H 0.081 0.919 40 H 0.232 0.768 41 H 0.088 0.912 42 H 0.089 0.911 43 H 0.121 0.879 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.342 -19.795 -12.145 29.593 hybrid contribution 0.311 -0.133 1.546 1.583 sum -18.031 -19.928 -10.598 28.889 Atomic orbital electron populations 1.24174 0.95772 1.03172 0.96891 1.22946 0.96290 0.97404 1.03129 1.20373 0.91562 0.96516 0.89395 1.45877 1.40227 1.19993 1.30937 1.21128 0.80875 0.82034 0.86653 1.90734 1.68897 1.37275 1.48637 1.21889 0.96199 0.94923 0.95567 1.59953 1.21964 1.03994 1.45765 1.22466 0.96214 0.97145 0.92655 1.21811 0.91860 0.98239 0.82137 0.89307 1.86627 1.56132 1.55379 1.38703 1.23499 0.96510 0.84512 1.00047 1.85888 1.54977 1.34718 1.49353 1.18706 0.97241 0.95277 0.93177 1.20004 0.99892 0.95272 1.00306 1.20885 1.00884 1.00429 0.95005 1.17961 0.92344 0.92026 0.92517 1.19743 1.21500 0.93875 1.17768 0.90489 1.26734 0.99660 0.95377 0.96230 1.69902 1.34125 1.03141 1.38809 0.85173 0.77567 0.79178 0.77860 1.18027 1.19127 1.19168 1.20822 1.01773 0.98540 1.01499 1.20709 1.01913 0.98349 0.97201 0.88472 0.86217 0.85044 0.92410 0.92007 0.74496 0.85690 0.89466 0.83657 0.88257 0.91883 0.76778 0.91156 0.91069 0.87854 0.87407 0.90268 0.87418 0.84945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 14.32 67.78 0.97 0.07 16 2 C -0.18 -1.14 9.63 25.65 0.25 -0.89 16 3 C 0.14 1.71 6.11 85.63 0.52 2.23 16 4 N -0.72 -7.44 5.55 -466.78 -2.59 -10.03 16 5 C 0.51 8.63 7.87 87.66 0.69 9.32 16 6 O -0.58 -16.20 16.20 -3.04 -0.05 -16.25 16 7 C 0.05 0.52 6.17 85.56 0.53 1.05 16 8 N -0.68 -12.26 5.99 -517.92 -3.10 -15.36 16 9 C 0.04 0.67 5.35 86.30 0.46 1.13 16 10 C 0.12 2.79 3.45 30.59 0.11 2.90 16 11 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 12 O -0.56 -15.50 13.17 -144.36 -1.90 -17.40 16 13 C 0.03 0.84 4.37 71.98 0.31 1.15 16 14 O -0.33 -13.32 10.09 -85.30 -0.86 -14.18 16 15 C 0.00 -0.01 6.71 22.79 0.15 0.15 16 16 C -0.14 -6.82 9.92 22.11 0.22 -6.60 16 17 C -0.15 -8.32 8.64 22.48 0.19 -8.12 16 18 C 0.05 2.94 5.57 -21.28 -0.12 2.82 16 19 C -0.50 -27.10 9.04 23.40 0.21 -26.89 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 21 C 0.03 1.72 5.13 85.23 0.44 2.16 16 22 N -0.83 -44.46 10.96 21.82 0.24 -44.22 16 23 Si 0.98 38.58 29.60 68.60 2.03 40.62 16 24 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 25 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 26 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 27 C -0.21 -10.02 9.74 22.48 0.22 -9.80 16 28 C -0.16 -7.01 8.96 22.11 0.20 -6.81 16 29 H 0.10 0.60 7.84 -2.91 -0.02 0.57 16 30 H 0.12 0.30 8.06 -2.91 -0.02 0.28 16 31 H 0.13 0.43 8.06 -2.91 -0.02 0.41 16 32 H 0.06 0.83 7.79 -2.38 -0.02 0.82 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.42 1.44 8.46 -92.71 -0.78 0.66 16 35 H 0.13 0.87 8.14 -2.38 -0.02 0.85 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.34 7.20 8.43 -89.70 -0.76 6.44 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.38 7.84 9.05 -74.05 -0.67 7.17 16 41 H 0.07 1.71 7.63 -2.39 -0.02 1.69 16 42 H 0.07 1.77 7.66 -2.39 -0.02 1.75 16 43 H 0.10 4.90 8.06 -2.91 -0.02 4.88 16 44 H 0.11 6.13 6.16 -2.91 -0.02 6.11 16 45 H 0.29 13.83 8.30 -92.70 -0.77 13.06 16 46 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 47 H 0.13 4.53 6.27 -2.91 -0.02 4.51 16 Total: -1.00 -75.25 400.45 -2.09 -77.34 By element: Atomic # 1 Polarization: 36.86 SS G_CDS: -1.21 Total: 35.66 kcal Atomic # 6 Polarization: -41.51 SS G_CDS: 5.35 Total: -36.16 kcal Atomic # 7 Polarization: -64.17 SS G_CDS: -5.45 Total: -69.62 kcal Atomic # 8 Polarization: -45.02 SS G_CDS: -2.81 Total: -47.83 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.62 kcal Total: -75.25 -2.09 -77.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262566459.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.962 kcal (2) G-P(sol) polarization free energy of solvation -75.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.339 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds