Wall clock time and date at job start Tue Mar 31 2020 18:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99861 * 2 1 4 4 N 1.46503 * 109.46870 * 125.00230 * 3 2 1 5 5 C 1.34769 * 119.99953 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00431 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00139 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.46900 * 110.99651 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46696 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46985 * 305.00301 * 10 9 8 12 12 O 1.42900 * 109.47007 * 65.00136 * 10 9 8 13 13 C 1.52999 * 109.47031 * 185.00089 * 10 9 8 14 14 O 1.42897 * 109.47433 * 175.00071 * 13 10 9 15 15 C 1.35669 * 117.00243 * 179.97438 * 14 13 10 16 16 C 1.39311 * 119.81866 * 359.72733 * 15 14 13 17 17 C 1.36438 * 120.18358 * 179.75745 * 16 15 14 18 18 C 1.40830 * 119.81289 * 0.51455 * 17 16 15 19 19 C 1.41218 * 120.17970 * 179.72046 * 18 17 16 20 20 H 1.07998 * 120.00072 * 24.56905 * 19 18 17 21 21 C 1.39890 * 120.00080 * 204.56816 * 19 18 17 22 22 N 1.30886 * 119.99515 * 17.93469 * 21 19 18 23 23 Si 1.86792 * 120.00234 * 197.93138 * 21 19 18 24 24 H 1.48501 * 109.47005 * 90.00069 * 23 21 19 25 25 H 1.48502 * 109.47551 * 210.00116 * 23 21 19 26 26 H 1.48500 * 109.47275 * 330.00023 * 23 21 19 27 27 C 1.40828 * 119.64080 * 359.73527 * 18 17 16 28 28 C 1.36439 * 119.81623 * 0.02562 * 27 18 17 29 29 H 1.08003 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00045 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99623 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47151 * 5.00790 * 3 2 1 33 33 H 1.09002 * 109.47177 * 245.00129 * 3 2 1 34 34 H 0.97004 * 119.99805 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.46421 * 60.00174 * 7 5 4 36 36 H 1.08996 * 109.47329 * 300.00455 * 7 5 4 37 37 H 1.00890 * 111.00186 * 303.95841 * 8 7 5 38 38 H 1.09000 * 109.47415 * 60.00746 * 9 8 7 39 39 H 1.09004 * 109.47124 * 299.99947 * 9 8 7 40 40 H 0.96693 * 114.00269 * 60.00236 * 12 10 9 41 41 H 1.09003 * 109.47247 * 54.99860 * 13 10 9 42 42 H 1.09009 * 109.47007 * 295.00024 * 13 10 9 43 43 H 1.08000 * 119.90560 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.09115 * 180.25228 * 17 16 15 45 45 H 0.96999 * 119.99379 * 180.02562 * 22 21 19 46 46 H 1.08008 * 120.09419 * 179.97438 * 27 18 17 47 47 H 1.07990 * 119.91036 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4085 1.3329 6 8 3.7152 3.3555 0.5779 7 6 4.7356 2.4363 2.4971 8 7 5.4710 3.7079 2.4964 9 6 6.4155 3.7704 3.6197 10 6 7.1605 5.1064 3.5859 11 1 7.6339 5.2338 2.6123 12 8 6.2362 6.1730 3.8094 13 6 8.2307 5.1214 4.6792 14 8 9.0029 6.3191 4.5736 15 6 10.0012 6.4899 5.4763 16 6 10.2274 5.5204 6.4508 17 6 11.2325 5.6823 7.3591 18 6 12.0353 6.8386 7.3165 19 6 13.0739 7.0168 8.2566 20 1 13.5216 6.1588 8.7359 21 6 13.5230 8.3048 8.5670 22 7 12.7813 9.3437 8.2779 23 14 15.1810 8.5419 9.3940 24 1 16.2338 8.6934 8.3577 25 1 15.1417 9.7606 10.2416 26 1 15.4856 7.3602 10.2401 27 6 11.7966 7.8163 6.3314 28 6 10.7906 7.6369 5.4273 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.0451 0.5743 1.7351 35 1 5.4402 1.6094 2.4081 36 1 4.1775 2.3394 3.4283 37 1 5.9451 3.8509 1.6174 38 1 7.1316 2.9526 3.5384 39 1 5.8693 3.6830 4.5590 40 1 5.7769 6.1239 4.6588 41 1 8.8835 4.2565 4.5606 42 1 7.7512 5.0832 5.6575 43 1 9.6083 4.6362 6.4845 44 1 11.4092 4.9278 8.1114 45 1 13.0928 10.2368 8.4928 46 1 12.4075 8.7061 6.2922 47 1 10.6059 8.3858 4.6715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001262566460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:41 Heat of formation + Delta-G solvation = -81.485411 kcal Electronic energy + Delta-G solvation = -26587.604217 eV Core-core repulsion = 22543.042921 eV Total energy + Delta-G solvation = -4044.561296 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.09694 -39.06314 -37.74423 -36.41897 -36.07542 -35.05944 -33.30827 -33.27659 -30.86796 -29.70833 -29.03458 -28.07786 -26.08211 -24.78121 -23.76423 -22.04025 -21.15264 -20.72610 -20.57244 -20.32313 -17.81714 -17.35306 -16.99095 -16.85336 -16.72873 -16.14470 -15.99709 -15.40099 -15.21918 -15.04521 -14.70410 -14.29875 -14.03642 -13.91115 -13.75772 -13.60922 -13.29365 -13.00890 -12.79573 -12.54061 -12.24003 -12.13342 -12.11178 -11.75918 -11.74091 -11.38370 -11.14766 -10.97056 -10.80004 -10.60431 -10.50396 -10.08981 -9.96575 -9.85710 -9.79977 -9.49221 -9.32494 -9.02092 -8.74638 -7.63876 -7.02747 -6.71645 -4.25234 1.48073 2.29354 2.76871 2.78309 2.95455 3.09116 3.12207 3.21921 3.59577 3.95633 4.18283 4.20236 4.39272 4.49178 4.50647 4.62442 4.78773 4.83999 4.96365 4.98799 5.01763 5.18778 5.21722 5.25532 5.27737 5.40548 5.60559 5.67634 5.85868 5.92709 6.02187 6.05678 6.10284 6.23430 6.46894 6.73811 6.95009 6.98198 7.09619 7.11622 7.19080 7.47049 7.56206 7.78985 7.80777 7.85707 8.01103 8.21026 8.45988 8.65996 8.90380 8.99250 10.22800 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.051076 B = 0.001393 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.069716 B =20095.230234 C =20437.160255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.179 4.179 3 C 0.147 3.853 4 N -0.733 5.733 5 C 0.511 3.489 6 O -0.520 6.520 7 C 0.041 3.959 8 N -0.663 5.663 9 C 0.032 3.968 10 C 0.115 3.885 11 H 0.104 0.896 12 O -0.538 6.538 13 C 0.039 3.961 14 O -0.316 6.316 15 C -0.009 4.009 16 C -0.168 4.168 17 C -0.199 4.199 18 C 0.088 3.912 19 C -0.465 4.465 20 H 0.076 0.924 21 C 0.075 3.925 22 N -0.798 5.798 23 Si 0.907 3.093 24 H -0.268 1.268 25 H -0.278 1.278 26 H -0.263 1.263 27 C -0.133 4.133 28 C -0.118 4.118 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.115 0.885 32 H 0.072 0.928 33 H 0.075 0.925 34 H 0.401 0.599 35 H 0.060 0.940 36 H 0.103 0.897 37 H 0.354 0.646 38 H 0.044 0.956 39 H 0.081 0.919 40 H 0.371 0.629 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.092 0.908 44 H 0.094 0.906 45 H 0.280 0.720 46 H 0.126 0.874 47 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.547 -18.173 -10.978 28.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.197 4.197 3 C 0.024 3.976 4 N -0.387 5.387 5 C 0.296 3.704 6 O -0.394 6.394 7 C -0.091 4.091 8 N -0.296 5.296 9 C -0.098 4.098 10 C 0.055 3.945 11 H 0.122 0.878 12 O -0.342 6.342 13 C -0.039 4.039 14 O -0.232 6.232 15 C -0.053 4.053 16 C -0.187 4.187 17 C -0.219 4.219 18 C 0.086 3.914 19 C -0.495 4.495 20 H 0.094 0.906 21 C -0.142 4.142 22 N -0.424 5.424 23 Si 0.732 3.268 24 H -0.193 1.193 25 H -0.204 1.204 26 H -0.187 1.187 27 C -0.152 4.152 28 C -0.137 4.137 29 H 0.119 0.881 30 H 0.122 0.878 31 H 0.133 0.867 32 H 0.090 0.910 33 H 0.094 0.906 34 H 0.235 0.765 35 H 0.078 0.922 36 H 0.121 0.879 37 H 0.174 0.826 38 H 0.062 0.938 39 H 0.099 0.901 40 H 0.217 0.783 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.110 0.890 44 H 0.112 0.888 45 H 0.091 0.909 46 H 0.143 0.857 47 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.929 -16.537 -11.919 27.818 hybrid contribution 1.198 -1.431 1.209 2.223 sum -17.732 -17.969 -10.711 27.423 Atomic orbital electron populations 1.24016 0.95807 1.02546 0.97817 1.23000 0.96263 0.98056 1.02374 1.20396 0.91840 0.95599 0.89799 1.45978 1.41472 1.20143 1.31105 1.20648 0.81201 0.82103 0.86417 1.90754 1.67373 1.34657 1.46615 1.21810 0.96610 0.92788 0.97916 1.60003 1.31099 1.31475 1.07043 1.22619 0.94372 0.97521 0.95285 1.21817 0.87639 0.85781 0.99261 0.87790 1.86664 1.57750 1.47941 1.41861 1.23103 0.93508 0.88734 0.98517 1.85893 1.44674 1.39312 1.53321 1.18635 0.94104 0.97882 0.94635 1.20383 1.01448 0.98280 0.98593 1.20548 0.98820 1.01086 1.01425 1.17597 0.91474 0.90824 0.91552 1.19467 1.16095 0.92792 1.21103 0.90566 1.25873 0.97986 0.95667 0.94638 1.69839 1.35102 0.99870 1.37617 0.86327 0.82334 0.78575 0.79548 1.19325 1.20372 1.18736 1.20987 0.98582 1.01274 0.94395 1.19851 0.97458 0.95399 1.01019 0.88071 0.87812 0.86676 0.90975 0.90646 0.76496 0.92249 0.87927 0.82647 0.93830 0.90086 0.78258 0.92577 0.92835 0.88985 0.88799 0.90900 0.85663 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.59 14.32 29.01 0.42 -0.18 16 2 C -0.18 -0.71 9.63 -36.03 -0.35 -1.06 16 3 C 0.15 0.89 6.11 -5.19 -0.03 0.86 16 4 N -0.73 -4.34 5.55 -61.47 -0.34 -4.69 16 5 C 0.51 4.63 7.87 -10.99 -0.09 4.54 16 6 O -0.52 -7.16 16.20 5.56 0.09 -7.07 16 7 C 0.04 0.29 6.17 -4.97 -0.03 0.26 16 8 N -0.66 -6.59 6.07 -115.05 -0.70 -7.29 16 9 C 0.03 0.29 5.32 -3.82 -0.02 0.27 16 10 C 0.12 1.46 3.43 -26.73 -0.09 1.36 16 11 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 12 O -0.54 -7.82 13.25 -40.08 -0.53 -8.35 16 13 C 0.04 0.58 4.36 37.16 0.16 0.75 16 14 O -0.32 -6.53 10.09 -23.56 -0.24 -6.77 16 15 C -0.01 -0.22 6.71 -38.78 -0.26 -0.48 16 16 C -0.17 -3.78 8.96 -39.83 -0.36 -4.13 16 17 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 18 C 0.09 2.35 5.57 -106.81 -0.60 1.76 16 19 C -0.46 -12.36 9.04 -37.83 -0.34 -12.70 16 20 H 0.08 1.95 7.91 -52.49 -0.41 1.53 16 21 C 0.08 1.90 5.13 -17.34 -0.09 1.81 16 22 N -0.80 -20.80 10.96 55.54 0.61 -20.19 16 23 Si 0.91 18.73 29.60 -169.99 -5.03 13.70 16 24 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 25 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 26 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 27 C -0.13 -3.51 8.64 -39.25 -0.34 -3.85 16 28 C -0.12 -2.92 9.92 -39.83 -0.40 -3.31 16 29 H 0.10 0.36 7.84 -52.48 -0.41 -0.05 16 30 H 0.10 0.25 8.06 -52.49 -0.42 -0.17 16 31 H 0.12 0.32 8.06 -52.49 -0.42 -0.10 16 32 H 0.07 0.52 7.79 -51.93 -0.40 0.11 16 33 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.40 1.21 8.46 -40.82 -0.35 0.87 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.35 3.78 8.43 -39.30 -0.33 3.45 16 38 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.37 4.14 9.04 45.56 0.41 4.55 16 41 H 0.06 0.79 7.66 -51.93 -0.40 0.39 16 42 H 0.05 0.76 7.63 -51.92 -0.40 0.37 16 43 H 0.09 1.76 6.27 -52.49 -0.33 1.43 16 44 H 0.09 2.14 8.06 -52.48 -0.42 1.72 16 45 H 0.28 6.64 8.30 -40.82 -0.34 6.31 16 46 H 0.13 3.38 6.16 -52.48 -0.32 3.05 16 47 H 0.10 2.25 8.06 -52.49 -0.42 1.83 16 LS Contribution 400.56 15.07 6.04 6.04 Total: -1.00 -33.50 400.56 -9.20 -42.70 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -6.30 Total: 11.28 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.79 Total: -19.36 kcal Atomic # 7 Polarization: -31.73 SS G_CDS: -0.43 Total: -32.16 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.68 Total: -22.19 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.50 -9.20 -42.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262566460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.784 kcal (2) G-P(sol) polarization free energy of solvation -33.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds