Wall clock time and date at job start Tue Mar 31 2020 18:42:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50700 * 119.99861 * 2 1 4 4 N 1.46503 * 109.46870 * 125.00230 * 3 2 1 5 5 C 1.34769 * 119.99953 * 179.97438 * 4 3 2 6 6 O 1.21282 * 120.00431 * 0.02562 * 5 4 3 7 7 C 1.50707 * 120.00139 * 179.97438 * 5 4 3 8 8 N 1.46900 * 109.47212 * 179.97438 * 7 5 4 9 9 C 1.46900 * 110.99651 * 180.02562 * 8 7 5 10 10 C 1.53005 * 109.46696 * 180.02562 * 9 8 7 11 11 H 1.08998 * 109.46985 * 305.00301 * 10 9 8 12 12 O 1.42900 * 109.47007 * 65.00136 * 10 9 8 13 13 C 1.52999 * 109.47031 * 185.00089 * 10 9 8 14 14 O 1.42897 * 109.47433 * 175.00071 * 13 10 9 15 15 C 1.35669 * 117.00243 * 179.97438 * 14 13 10 16 16 C 1.39311 * 119.81866 * 359.72733 * 15 14 13 17 17 C 1.36438 * 120.18358 * 179.75745 * 16 15 14 18 18 C 1.40830 * 119.81289 * 0.51455 * 17 16 15 19 19 C 1.41218 * 120.17970 * 179.72046 * 18 17 16 20 20 H 1.07998 * 120.00072 * 24.56905 * 19 18 17 21 21 C 1.39890 * 120.00080 * 204.56816 * 19 18 17 22 22 N 1.30886 * 119.99515 * 17.93469 * 21 19 18 23 23 Si 1.86792 * 120.00234 * 197.93138 * 21 19 18 24 24 H 1.48501 * 109.47005 * 90.00069 * 23 21 19 25 25 H 1.48502 * 109.47551 * 210.00116 * 23 21 19 26 26 H 1.48500 * 109.47275 * 330.00023 * 23 21 19 27 27 C 1.40828 * 119.64080 * 359.73527 * 18 17 16 28 28 C 1.36439 * 119.81623 * 0.02562 * 27 18 17 29 29 H 1.08003 * 120.00311 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00045 * 179.97438 * 1 2 3 31 31 H 1.08000 * 119.99623 * 180.02562 * 2 1 3 32 32 H 1.08993 * 109.47151 * 5.00790 * 3 2 1 33 33 H 1.09002 * 109.47177 * 245.00129 * 3 2 1 34 34 H 0.97004 * 119.99805 * 0.02562 * 4 3 2 35 35 H 1.09006 * 109.46421 * 60.00174 * 7 5 4 36 36 H 1.08996 * 109.47329 * 300.00455 * 7 5 4 37 37 H 1.00890 * 111.00186 * 303.95841 * 8 7 5 38 38 H 1.09000 * 109.47415 * 60.00746 * 9 8 7 39 39 H 1.09004 * 109.47124 * 299.99947 * 9 8 7 40 40 H 0.96693 * 114.00269 * 60.00236 * 12 10 9 41 41 H 1.09003 * 109.47247 * 54.99860 * 13 10 9 42 42 H 1.09009 * 109.47007 * 295.00024 * 13 10 9 43 43 H 1.08000 * 119.90560 * 0.02562 * 16 15 14 44 44 H 1.08003 * 120.09115 * 180.25228 * 17 16 15 45 45 H 0.96999 * 119.99379 * 180.02562 * 22 21 19 46 46 H 1.08008 * 120.09419 * 179.97438 * 27 18 17 47 47 H 1.07990 * 119.91036 * 179.97438 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3319 1.1314 5 6 3.7790 2.4085 1.3329 6 8 3.7152 3.3555 0.5779 7 6 4.7356 2.4363 2.4971 8 7 5.4710 3.7079 2.4964 9 6 6.4155 3.7704 3.6197 10 6 7.1605 5.1064 3.5859 11 1 7.6339 5.2338 2.6123 12 8 6.2362 6.1730 3.8094 13 6 8.2307 5.1214 4.6792 14 8 9.0029 6.3191 4.5736 15 6 10.0012 6.4899 5.4763 16 6 10.2274 5.5204 6.4508 17 6 11.2325 5.6823 7.3591 18 6 12.0353 6.8386 7.3165 19 6 13.0739 7.0168 8.2566 20 1 13.5216 6.1588 8.7359 21 6 13.5230 8.3048 8.5670 22 7 12.7813 9.3437 8.2779 23 14 15.1810 8.5419 9.3940 24 1 16.2338 8.6934 8.3577 25 1 15.1417 9.7606 10.2416 26 1 15.4856 7.3602 10.2401 27 6 11.7966 7.8163 6.3314 28 6 10.7906 7.6369 5.4273 29 1 -0.5401 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8499 -0.9353 -0.0004 32 1 1.3586 2.1316 0.0897 33 1 2.6212 1.4027 -0.9314 34 1 3.0451 0.5743 1.7351 35 1 5.4402 1.6094 2.4081 36 1 4.1775 2.3394 3.4283 37 1 5.9451 3.8509 1.6174 38 1 7.1316 2.9526 3.5384 39 1 5.8693 3.6830 4.5590 40 1 5.7769 6.1239 4.6588 41 1 8.8835 4.2565 4.5606 42 1 7.7512 5.0832 5.6575 43 1 9.6083 4.6362 6.4845 44 1 11.4092 4.9278 8.1114 45 1 13.0928 10.2368 8.4928 46 1 12.4075 8.7061 6.2922 47 1 10.6059 8.3858 4.6715 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262566460.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:40 Heat of formation + Delta-G solvation = -107.534073 kcal Electronic energy + Delta-G solvation = -26588.733771 eV Core-core repulsion = 22543.042921 eV Total energy + Delta-G solvation = -4045.690850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.81056 -40.59197 -38.99944 -37.76808 -36.85727 -35.90390 -35.16810 -33.75906 -32.09694 -31.34389 -30.83463 -28.91659 -27.01427 -26.33893 -24.70131 -23.20262 -22.44748 -22.23462 -21.68134 -20.79545 -19.24467 -18.82834 -18.22755 -17.63921 -17.46462 -17.18520 -17.01171 -16.89733 -16.11847 -15.92239 -15.73604 -15.55672 -15.31493 -15.24503 -14.79477 -14.45378 -14.20952 -14.07636 -14.02720 -13.90810 -13.55152 -13.43588 -13.24560 -13.03718 -12.80295 -12.74382 -12.59457 -12.37912 -12.06394 -11.91008 -11.68273 -11.57370 -11.25631 -11.11833 -10.90395 -10.85742 -10.50035 -10.06247 -9.55198 -9.38688 -8.91564 -8.58660 -6.22108 0.95764 1.03757 1.16021 1.40434 1.53483 1.53618 1.62970 2.17629 2.23513 2.53677 2.73725 3.28854 3.57705 3.71350 3.79776 3.87674 3.94894 4.03644 4.07001 4.14541 4.30356 4.33535 4.37681 4.44413 4.45253 4.49666 4.55648 4.66114 4.74751 4.87734 4.99120 5.04290 5.08621 5.22811 5.29272 5.35994 5.59960 5.63465 5.65173 5.76912 5.86594 5.89326 6.06777 6.22465 6.27343 6.57856 6.58106 6.82005 6.91733 6.95990 7.11883 7.26743 8.37894 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.051076 B = 0.001393 C = 0.001370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.069716 B =20095.230234 C =20437.160255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.180 4.180 3 C 0.145 3.855 4 N -0.716 5.716 5 C 0.506 3.494 6 O -0.577 6.577 7 C 0.046 3.954 8 N -0.686 5.686 9 C 0.045 3.955 10 C 0.120 3.880 11 H 0.090 0.910 12 O -0.564 6.564 13 C 0.030 3.970 14 O -0.334 6.334 15 C 0.000 4.000 16 C -0.163 4.163 17 C -0.207 4.207 18 C 0.054 3.946 19 C -0.500 4.500 20 H 0.077 0.923 21 C 0.034 3.966 22 N -0.833 5.833 23 Si 0.982 3.018 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.257 1.257 27 C -0.153 4.153 28 C -0.136 4.136 29 H 0.096 0.904 30 H 0.120 0.880 31 H 0.132 0.868 32 H 0.056 0.944 33 H 0.063 0.937 34 H 0.418 0.582 35 H 0.089 0.911 36 H 0.124 0.876 37 H 0.345 0.655 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.384 0.616 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.133 0.867 44 H 0.108 0.892 45 H 0.287 0.713 46 H 0.108 0.892 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.280 -20.974 -10.168 30.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.198 4.198 3 C 0.021 3.979 4 N -0.370 5.370 5 C 0.293 3.707 6 O -0.456 6.456 7 C -0.086 4.086 8 N -0.319 5.319 9 C -0.084 4.084 10 C 0.060 3.940 11 H 0.108 0.892 12 O -0.370 6.370 13 C -0.046 4.046 14 O -0.249 6.249 15 C -0.044 4.044 16 C -0.182 4.182 17 C -0.226 4.226 18 C 0.052 3.948 19 C -0.530 4.530 20 H 0.095 0.905 21 C -0.180 4.180 22 N -0.460 5.460 23 Si 0.803 3.197 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.180 1.180 27 C -0.172 4.172 28 C -0.155 4.155 29 H 0.115 0.885 30 H 0.138 0.862 31 H 0.150 0.850 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.255 0.745 35 H 0.107 0.893 36 H 0.142 0.858 37 H 0.164 0.836 38 H 0.083 0.917 39 H 0.117 0.883 40 H 0.232 0.768 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.151 0.849 44 H 0.126 0.874 45 H 0.097 0.903 46 H 0.126 0.874 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -19.703 -19.407 -11.088 29.796 hybrid contribution 1.212 -0.647 0.842 1.611 sum -18.491 -20.054 -10.246 29.139 Atomic orbital electron populations 1.24180 0.95804 1.03165 0.96867 1.22946 0.96285 0.97392 1.03148 1.20374 0.91598 0.96492 0.89386 1.45877 1.40269 1.19898 1.30979 1.21129 0.81399 0.81790 0.86380 1.90733 1.69225 1.36859 1.48743 1.21887 0.96568 0.92434 0.97677 1.59966 1.31482 1.33606 1.06802 1.22474 0.94583 0.95582 0.95783 1.21823 0.87101 0.87430 0.97673 0.89178 1.86628 1.58196 1.49211 1.43008 1.23506 0.93732 0.87088 1.00263 1.85887 1.44247 1.42255 1.52549 1.18709 0.93924 0.97134 0.94656 1.20706 1.00953 0.99269 0.97231 1.20818 0.98939 1.00656 1.02216 1.17958 0.92650 0.92055 0.92153 1.19730 1.17354 0.93700 1.22184 0.90466 1.26737 1.01406 0.94872 0.94994 1.69902 1.36879 1.00507 1.38663 0.85204 0.77170 0.78795 0.78531 1.18866 1.19448 1.18048 1.20888 0.99584 1.01209 0.95552 1.20006 0.97762 0.96634 1.01062 0.88518 0.86195 0.84996 0.92549 0.91867 0.74490 0.89310 0.85819 0.83604 0.91734 0.88332 0.76779 0.90803 0.91397 0.84944 0.87416 0.90261 0.87409 0.87855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.92 14.32 67.78 0.97 0.05 16 2 C -0.18 -1.14 9.63 25.65 0.25 -0.89 16 3 C 0.14 1.70 6.11 85.63 0.52 2.23 16 4 N -0.72 -7.43 5.55 -466.79 -2.59 -10.02 16 5 C 0.51 8.63 7.87 87.66 0.69 9.32 16 6 O -0.58 -16.20 16.20 -3.04 -0.05 -16.25 16 7 C 0.05 0.52 6.17 85.56 0.53 1.05 16 8 N -0.69 -12.30 6.07 -517.90 -3.15 -15.45 16 9 C 0.04 0.68 5.32 86.30 0.46 1.13 16 10 C 0.12 2.80 3.43 30.60 0.10 2.90 16 11 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 12 O -0.56 -15.74 13.25 -144.35 -1.91 -17.66 16 13 C 0.03 0.83 4.36 71.98 0.31 1.14 16 14 O -0.33 -13.32 10.09 -85.23 -0.86 -14.18 16 15 C 0.00 -0.02 6.71 22.79 0.15 0.14 16 16 C -0.16 -7.00 8.96 22.11 0.20 -6.80 16 17 C -0.21 -10.01 9.74 22.48 0.22 -9.79 16 18 C 0.05 2.95 5.57 -21.28 -0.12 2.83 16 19 C -0.50 -27.13 9.04 23.40 0.21 -26.92 16 20 H 0.08 4.00 7.91 -2.91 -0.02 3.98 16 21 C 0.03 1.72 5.13 85.23 0.44 2.16 16 22 N -0.83 -44.53 10.96 21.82 0.24 -44.29 16 23 Si 0.98 38.59 29.60 68.60 2.03 40.62 16 24 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 25 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 27 C -0.15 -8.34 8.64 22.48 0.19 -8.14 16 28 C -0.14 -6.82 9.92 22.11 0.22 -6.60 16 29 H 0.10 0.62 7.84 -2.91 -0.02 0.60 16 30 H 0.12 0.31 8.06 -2.91 -0.02 0.28 16 31 H 0.13 0.41 8.06 -2.91 -0.02 0.39 16 32 H 0.06 0.84 7.79 -2.39 -0.02 0.82 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.42 1.43 8.46 -92.70 -0.78 0.64 16 35 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 36 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.35 7.11 8.43 -89.70 -0.76 6.35 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 40 H 0.38 7.97 9.04 -74.06 -0.67 7.30 16 41 H 0.07 1.79 7.66 -2.39 -0.02 1.77 16 42 H 0.07 1.69 7.63 -2.38 -0.02 1.67 16 43 H 0.13 4.53 6.27 -2.91 -0.02 4.51 16 44 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 45 H 0.29 13.90 8.30 -92.71 -0.77 13.13 16 46 H 0.11 6.13 6.16 -2.91 -0.02 6.11 16 47 H 0.10 4.90 8.06 -2.92 -0.02 4.88 16 Total: -1.00 -75.46 400.56 -2.14 -77.60 By element: Atomic # 1 Polarization: 37.03 SS G_CDS: -1.21 Total: 35.83 kcal Atomic # 6 Polarization: -41.55 SS G_CDS: 5.35 Total: -36.19 kcal Atomic # 7 Polarization: -64.27 SS G_CDS: -5.50 Total: -69.76 kcal Atomic # 8 Polarization: -45.27 SS G_CDS: -2.82 Total: -48.09 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Total: -75.46 -2.14 -77.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262566460.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.933 kcal (2) G-P(sol) polarization free energy of solvation -75.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds