Wall clock time and date at job start Tue Mar 31 2020 18:23:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 N 1.46499 * 109.47092 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00012 * 269.55160 * 4 3 2 6 6 H 1.07995 * 120.00266 * 322.08910 * 5 4 3 7 7 C 1.38814 * 120.00001 * 142.08902 * 5 4 3 8 8 N 1.31612 * 120.00209 * 156.97616 * 7 5 4 9 9 Si 1.86804 * 119.99713 * 336.97043 * 7 5 4 10 10 H 1.48507 * 109.46797 * 95.70150 * 9 7 5 11 11 H 1.48500 * 109.47089 * 215.69939 * 9 7 5 12 12 H 1.48498 * 109.47457 * 335.70536 * 9 7 5 13 13 C 1.46500 * 120.00150 * 89.55695 * 4 3 2 14 14 C 1.52993 * 109.47351 * 89.99597 * 13 4 3 15 15 N 1.46496 * 109.47502 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00509 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00271 * 179.97438 * 16 15 14 19 19 H 1.09000 * 109.70788 * 305.00664 * 18 16 15 20 20 C 1.53470 * 109.70663 * 65.58736 * 18 16 15 21 21 O 1.43187 * 108.23916 * 179.42178 * 20 18 16 22 22 C 1.36104 * 116.70563 * 313.76933 * 21 20 18 23 23 C 1.38699 * 119.40126 * 197.25960 * 22 21 20 24 24 C 1.38196 * 120.06480 * 180.10627 * 23 22 21 25 25 C 1.38250 * 120.11949 * 0.05957 * 24 23 22 26 26 C 1.38198 * 120.10746 * 359.89878 * 25 24 23 27 27 C 1.38699 * 120.06754 * 359.97438 * 26 25 24 28 28 O 1.36139 * 119.37754 * 180.28538 * 27 26 25 29 29 H 1.09001 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47078 * 300.00431 * 1 2 3 31 31 H 1.09008 * 109.46830 * 60.00533 * 1 2 3 32 32 H 1.09005 * 109.47526 * 239.99782 * 2 1 3 33 33 H 1.08999 * 109.46950 * 120.00073 * 2 1 3 34 34 H 1.09000 * 109.46994 * 59.99934 * 3 2 1 35 35 H 1.08999 * 109.47119 * 299.99969 * 3 2 1 36 36 H 0.97006 * 120.00216 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46769 * 329.99751 * 13 4 3 38 38 H 1.08997 * 109.47180 * 209.99934 * 13 4 3 39 39 H 1.09007 * 109.47201 * 300.00295 * 14 13 4 40 40 H 1.09003 * 109.47260 * 59.99861 * 14 13 4 41 41 H 0.97005 * 119.99606 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.71234 * 299.10488 * 20 18 16 43 43 H 1.08996 * 109.71048 * 59.74055 * 20 18 16 44 44 H 1.07998 * 119.96686 * 0.12940 * 23 22 21 45 45 H 1.08005 * 119.93568 * 180.02562 * 24 23 22 46 46 H 1.07993 * 119.94819 * 179.91604 * 25 24 23 47 47 H 1.07997 * 119.96477 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4518 1.1868 6 1 3.8199 2.0331 2.0186 7 6 5.3575 0.7141 1.3200 8 7 6.2442 1.0451 2.2346 9 14 5.6712 -0.7486 0.2012 10 1 6.5089 -0.3218 -0.9484 11 1 6.3779 -1.8106 0.9614 12 1 4.3763 -1.2760 -0.2989 13 6 4.2381 1.4323 -1.2677 14 6 4.4933 2.8712 -1.7207 15 7 5.2258 2.8612 -2.9894 16 6 5.5625 4.0237 -3.5824 17 8 5.2595 5.0782 -3.0656 18 6 6.3165 4.0133 -4.8871 19 1 7.2284 3.4259 -4.7800 20 6 5.4366 3.4068 -5.9886 21 8 6.1768 3.4247 -7.2142 22 6 6.8229 4.5825 -7.5216 23 6 7.2472 4.8002 -8.8240 24 6 7.9065 5.9700 -9.1510 25 6 8.1461 6.9256 -8.1811 26 6 7.7252 6.7152 -6.8817 27 6 7.0606 5.5446 -6.5474 28 8 6.6471 5.3545 -5.2643 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 7.0605 0.5294 2.3279 37 1 3.6493 0.9125 -2.0236 38 1 5.1904 0.9195 -1.1329 39 1 3.5409 3.3841 -1.8555 40 1 5.0821 3.3911 -0.9649 41 1 5.4679 2.0178 -3.4030 42 1 5.1793 2.3797 -5.7296 43 1 4.5274 3.9974 -6.0997 44 1 7.0618 4.0551 -9.5835 45 1 8.2356 6.1376 -10.1659 46 1 8.6627 7.8381 -8.4393 47 1 7.9132 7.4635 -6.1259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266577696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:22 Heat of formation + Delta-G solvation = -57.627750 kcal Electronic energy + Delta-G solvation = -28591.079430 eV Core-core repulsion = 24547.552680 eV Total energy + Delta-G solvation = -4043.526750 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.67874 -39.54577 -37.83623 -37.48223 -36.78566 -34.62587 -32.96545 -31.99885 -31.22751 -30.93063 -29.18399 -28.01685 -25.91180 -25.54068 -23.42384 -23.03842 -22.00885 -21.61885 -20.46362 -19.93078 -19.05462 -18.10832 -17.70441 -16.86120 -16.36451 -15.90468 -15.79675 -15.54421 -15.28099 -14.98703 -14.68092 -14.56162 -14.34808 -14.19228 -14.12174 -13.81035 -13.56497 -13.17719 -12.84299 -12.55706 -12.48167 -12.40122 -12.21844 -11.90132 -11.63662 -11.44631 -11.29165 -11.25246 -10.87769 -10.84110 -10.76942 -10.54557 -10.08337 -9.96738 -9.81540 -9.62871 -8.95167 -8.89895 -8.60704 -8.36197 -6.99301 -6.09716 -3.52474 1.00506 1.01885 2.33390 2.49324 2.75758 3.16564 3.37059 3.38462 3.41208 3.48552 3.87777 4.29221 4.40382 4.43217 4.46986 4.69273 4.75810 4.95281 4.96484 5.05904 5.10826 5.15618 5.19371 5.52242 5.54344 5.57931 5.65564 5.73538 5.85037 5.89211 5.90485 6.02495 6.06860 6.17402 6.31609 6.32567 6.36370 6.44337 6.47246 6.53658 6.57886 6.72001 6.81879 6.99228 7.10439 7.48436 7.93935 8.16802 8.30011 8.86348 9.59368 9.98335 11.05547 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002513 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.390945 B =11140.663242 C =11637.152931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.150 3.850 4 N -0.598 5.598 5 C -0.272 4.272 6 H 0.081 0.919 7 C 0.038 3.962 8 N -0.893 5.893 9 Si 0.874 3.126 10 H -0.287 1.287 11 H -0.300 1.300 12 H -0.265 1.265 13 C 0.128 3.872 14 C 0.100 3.900 15 N -0.717 5.717 16 C 0.520 3.480 17 O -0.510 6.510 18 C 0.033 3.967 19 H 0.111 0.889 20 C 0.035 3.965 21 O -0.302 6.302 22 C 0.045 3.955 23 C -0.113 4.113 24 C -0.119 4.119 25 C -0.115 4.115 26 C -0.112 4.112 27 C 0.055 3.945 28 O -0.277 6.277 29 H 0.044 0.956 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.048 0.952 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.038 0.962 36 H 0.264 0.736 37 H 0.045 0.955 38 H 0.059 0.941 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.397 0.603 42 H 0.129 0.871 43 H 0.086 0.914 44 H 0.134 0.866 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.208 4.340 -22.031 22.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.024 3.976 4 N -0.320 5.320 5 C -0.401 4.401 6 H 0.099 0.901 7 C -0.163 4.163 8 N -0.534 5.534 9 Si 0.704 3.296 10 H -0.216 1.216 11 H -0.228 1.228 12 H -0.190 1.190 13 C 0.001 3.999 14 C -0.025 4.025 15 N -0.371 5.371 16 C 0.302 3.698 17 O -0.384 6.384 18 C -0.028 4.028 19 H 0.129 0.871 20 C -0.041 4.041 21 O -0.216 6.216 22 C 0.000 4.000 23 C -0.131 4.131 24 C -0.137 4.137 25 C -0.133 4.133 26 C -0.130 4.130 27 C 0.009 3.991 28 O -0.191 6.191 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.231 0.769 42 H 0.147 0.853 43 H 0.104 0.896 44 H 0.152 0.848 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.336 5.052 -21.437 22.027 hybrid contribution 0.482 -1.481 -0.564 1.657 sum 0.147 3.571 -22.002 22.290 Atomic orbital electron populations 1.21730 0.97106 1.00584 1.01088 1.22130 0.93912 1.00651 1.01863 1.20997 0.83627 0.93641 0.99328 1.44009 1.00620 1.85943 1.01410 1.18785 1.06059 1.24324 0.90912 0.90145 1.25503 0.96777 0.97618 0.96444 1.69882 1.08337 1.39099 1.36044 0.86986 0.78033 0.84646 0.79957 1.21552 1.22823 1.18991 1.21336 0.97093 0.92598 0.88826 1.22410 0.95788 1.01655 0.82602 1.46019 1.58378 1.07301 1.25358 1.19547 0.80306 0.84985 0.84980 1.90770 1.52757 1.30532 1.64306 1.23001 1.00363 0.84602 0.94804 0.87135 1.23579 0.93721 1.04622 0.82209 1.86331 1.63448 1.31970 1.39837 1.18966 0.99391 0.87746 0.93909 1.20443 1.01113 0.98661 0.92921 1.20925 0.99724 0.93236 0.99865 1.20938 1.00587 0.99812 0.91960 1.20507 0.98602 0.96250 0.97655 1.19060 1.00089 0.96658 0.83246 1.86447 1.81323 1.26554 1.24731 0.93705 0.92989 0.93482 0.93331 0.91682 0.92734 0.94323 0.92587 0.93653 0.92350 0.91830 0.90182 0.76932 0.85283 0.89596 0.84764 0.85047 0.84965 0.84520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.91 37.16 0.37 -1.62 16 2 C -0.15 -2.49 6.26 -26.73 -0.17 -2.66 16 3 C 0.15 2.77 5.67 -4.04 -0.02 2.75 16 4 N -0.60 -13.13 2.07 -173.24 -0.36 -13.49 16 5 C -0.27 -7.21 9.90 -15.06 -0.15 -7.36 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.04 1.04 5.29 -17.43 -0.09 0.95 16 8 N -0.89 -26.43 13.97 55.49 0.78 -25.66 16 9 Si 0.87 20.78 25.10 -169.99 -4.27 16.51 16 10 H -0.29 -6.48 6.68 56.52 0.38 -6.11 16 11 H -0.30 -7.40 7.11 56.52 0.40 -7.00 16 12 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 13 C 0.13 2.47 4.63 -4.05 -0.02 2.45 16 14 C 0.10 1.81 6.00 -4.05 -0.02 1.79 16 15 N -0.72 -10.39 5.53 -60.30 -0.33 -10.73 16 16 C 0.52 8.12 7.19 -10.99 -0.08 8.04 16 17 O -0.51 -10.32 16.52 -14.16 -0.23 -10.56 16 18 C 0.03 0.42 3.44 -27.64 -0.10 0.32 16 19 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 20 C 0.03 0.35 6.53 37.40 0.24 0.60 16 21 O -0.30 -3.44 10.42 -32.83 -0.34 -3.79 16 22 C 0.04 0.53 6.49 -39.14 -0.25 0.27 16 23 C -0.11 -1.07 9.96 -39.43 -0.39 -1.46 16 24 C -0.12 -0.95 10.04 -39.59 -0.40 -1.35 16 25 C -0.11 -0.96 10.04 -39.59 -0.40 -1.36 16 26 C -0.11 -1.21 9.96 -39.43 -0.39 -1.60 16 27 C 0.05 0.70 6.49 -39.14 -0.25 0.45 16 28 O -0.28 -4.13 9.62 -47.14 -0.45 -4.58 16 29 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.58 8.14 -51.92 -0.42 0.15 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 34 H 0.05 1.03 8.03 -51.93 -0.42 0.61 16 35 H 0.04 0.63 8.08 -51.93 -0.42 0.22 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.05 0.75 8.07 -51.92 -0.42 0.33 16 38 H 0.06 1.23 3.38 -51.93 -0.18 1.06 16 39 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.08 1.74 8.14 -51.93 -0.42 1.32 16 41 H 0.40 4.44 8.37 -40.82 -0.34 4.10 16 42 H 0.13 0.92 8.04 -51.93 -0.42 0.50 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 45 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 46 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 47 H 0.14 1.36 8.06 -52.49 -0.42 0.93 16 LS Contribution 387.76 15.07 5.84 5.84 Total: -1.00 -33.27 387.76 -8.76 -42.03 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -7.27 Total: 4.20 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -2.12 Total: 0.21 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: 0.08 Total: -49.87 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -1.03 Total: -18.92 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.27 Total: 16.51 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.27 -8.76 -42.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.595 kcal (2) G-P(sol) polarization free energy of solvation -33.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds