Wall clock time and date at job start Tue Mar 31 2020 18:23:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47418 * 2 1 4 4 N 1.46499 * 109.47092 * 179.97438 * 3 2 1 5 5 C 1.36935 * 120.00012 * 269.55160 * 4 3 2 6 6 H 1.07995 * 120.00266 * 322.08910 * 5 4 3 7 7 C 1.38814 * 120.00001 * 142.08902 * 5 4 3 8 8 N 1.31612 * 120.00209 * 156.97616 * 7 5 4 9 9 Si 1.86804 * 119.99713 * 336.97043 * 7 5 4 10 10 H 1.48507 * 109.46797 * 95.70150 * 9 7 5 11 11 H 1.48500 * 109.47089 * 215.69939 * 9 7 5 12 12 H 1.48498 * 109.47457 * 335.70536 * 9 7 5 13 13 C 1.46500 * 120.00150 * 89.55695 * 4 3 2 14 14 C 1.52993 * 109.47351 * 89.99597 * 13 4 3 15 15 N 1.46496 * 109.47502 * 180.02562 * 14 13 4 16 16 C 1.34774 * 120.00509 * 179.97438 * 15 14 13 17 17 O 1.21282 * 120.00055 * 0.02562 * 16 15 14 18 18 C 1.50697 * 120.00271 * 179.97438 * 16 15 14 19 19 H 1.09000 * 109.70788 * 305.00664 * 18 16 15 20 20 C 1.53470 * 109.70663 * 65.58736 * 18 16 15 21 21 O 1.43187 * 108.23916 * 179.42178 * 20 18 16 22 22 C 1.36104 * 116.70563 * 313.76933 * 21 20 18 23 23 C 1.38699 * 119.40126 * 197.25960 * 22 21 20 24 24 C 1.38196 * 120.06480 * 180.10627 * 23 22 21 25 25 C 1.38250 * 120.11949 * 0.05957 * 24 23 22 26 26 C 1.38198 * 120.10746 * 359.89878 * 25 24 23 27 27 C 1.38699 * 120.06754 * 359.97438 * 26 25 24 28 28 O 1.36139 * 119.37754 * 180.28538 * 27 26 25 29 29 H 1.09001 * 109.47130 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47078 * 300.00431 * 1 2 3 31 31 H 1.09008 * 109.46830 * 60.00533 * 1 2 3 32 32 H 1.09005 * 109.47526 * 239.99782 * 2 1 3 33 33 H 1.08999 * 109.46950 * 120.00073 * 2 1 3 34 34 H 1.09000 * 109.46994 * 59.99934 * 3 2 1 35 35 H 1.08999 * 109.47119 * 299.99969 * 3 2 1 36 36 H 0.97006 * 120.00216 * 179.97438 * 8 7 5 37 37 H 1.09007 * 109.46769 * 329.99751 * 13 4 3 38 38 H 1.08997 * 109.47180 * 209.99934 * 13 4 3 39 39 H 1.09007 * 109.47201 * 300.00295 * 14 13 4 40 40 H 1.09003 * 109.47260 * 59.99861 * 14 13 4 41 41 H 0.97005 * 119.99606 * 0.02562 * 15 14 13 42 42 H 1.09000 * 109.71234 * 299.10488 * 20 18 16 43 43 H 1.08996 * 109.71048 * 59.74055 * 20 18 16 44 44 H 1.07998 * 119.96686 * 0.12940 * 23 22 21 45 45 H 1.08005 * 119.93568 * 180.02562 * 24 23 22 46 46 H 1.07993 * 119.94819 * 179.91604 * 25 24 23 47 47 H 1.07997 * 119.96477 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 0.0006 5 6 4.1892 1.4518 1.1868 6 1 3.8199 2.0331 2.0186 7 6 5.3575 0.7141 1.3200 8 7 6.2442 1.0451 2.2346 9 14 5.6712 -0.7486 0.2012 10 1 6.5089 -0.3218 -0.9484 11 1 6.3779 -1.8106 0.9614 12 1 4.3763 -1.2760 -0.2989 13 6 4.2381 1.4323 -1.2677 14 6 4.4933 2.8712 -1.7207 15 7 5.2258 2.8612 -2.9894 16 6 5.5625 4.0237 -3.5824 17 8 5.2595 5.0782 -3.0656 18 6 6.3165 4.0133 -4.8871 19 1 7.2284 3.4259 -4.7800 20 6 5.4366 3.4068 -5.9886 21 8 6.1768 3.4247 -7.2142 22 6 6.8229 4.5825 -7.5216 23 6 7.2472 4.8002 -8.8240 24 6 7.9065 5.9700 -9.1510 25 6 8.1461 6.9256 -8.1811 26 6 7.7252 6.7152 -6.8817 27 6 7.0606 5.5446 -6.5474 28 8 6.6471 5.3545 -5.2643 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 7.0605 0.5294 2.3279 37 1 3.6493 0.9125 -2.0236 38 1 5.1904 0.9195 -1.1329 39 1 3.5409 3.3841 -1.8555 40 1 5.0821 3.3911 -0.9649 41 1 5.4679 2.0178 -3.4030 42 1 5.1793 2.3797 -5.7296 43 1 4.5274 3.9974 -6.0997 44 1 7.0618 4.0551 -9.5835 45 1 8.2356 6.1376 -10.1659 46 1 8.6627 7.8381 -8.4393 47 1 7.9132 7.4635 -6.1259 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266577696.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:21 Heat of formation + Delta-G solvation = -79.546089 kcal Electronic energy + Delta-G solvation = -28592.029880 eV Core-core repulsion = 24547.552680 eV Total energy + Delta-G solvation = -4044.477200 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.56481 -40.77428 -38.69030 -38.51103 -38.23734 -36.03621 -34.58357 -33.41128 -32.58151 -31.66295 -30.27203 -29.21104 -27.54958 -26.50449 -24.89103 -23.85288 -23.48613 -22.64386 -21.66044 -21.39116 -19.94184 -19.31455 -18.65220 -18.42544 -17.47124 -17.40897 -17.03340 -16.77922 -16.25190 -16.00948 -15.96112 -15.67317 -15.60501 -15.39478 -15.07412 -14.89994 -14.76762 -14.47725 -14.32178 -14.19183 -14.05384 -13.56921 -13.17318 -12.87591 -12.83791 -12.69509 -12.43758 -12.42138 -12.24312 -12.22037 -12.15245 -11.88779 -11.72228 -11.48165 -11.35247 -11.09099 -10.65966 -10.27539 -9.68976 -9.16182 -8.84241 -8.21108 -5.61436 0.26648 0.27291 1.19146 1.27328 1.36040 1.44060 1.54821 1.95227 2.38324 2.41887 2.71237 2.97692 3.06107 3.28444 3.49391 3.53742 3.58761 4.00490 4.08253 4.11313 4.12407 4.23853 4.26130 4.31705 4.40920 4.43520 4.51429 4.52031 4.65425 4.79008 4.81991 4.87934 4.97471 5.01554 5.14000 5.18089 5.19183 5.23557 5.29909 5.43824 5.49409 5.60123 5.67111 5.77045 5.93212 6.17758 6.25532 6.33425 6.93802 6.98888 7.59949 8.00003 8.98739 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.016859 B = 0.002513 C = 0.002406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.390945 B =11140.663242 C =11637.152931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.139 4.139 3 C 0.145 3.855 4 N -0.611 5.611 5 C -0.261 4.261 6 H 0.034 0.966 7 C -0.023 4.023 8 N -0.950 5.950 9 Si 0.943 3.057 10 H -0.264 1.264 11 H -0.315 1.315 12 H -0.246 1.246 13 C 0.129 3.871 14 C 0.117 3.883 15 N -0.701 5.701 16 C 0.523 3.477 17 O -0.564 6.564 18 C 0.037 3.963 19 H 0.128 0.872 20 C 0.040 3.960 21 O -0.304 6.304 22 C 0.026 3.974 23 C -0.117 4.117 24 C -0.109 4.109 25 C -0.109 4.109 26 C -0.130 4.130 27 C 0.023 3.977 28 O -0.311 6.311 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.035 0.965 34 H 0.039 0.961 35 H 0.068 0.932 36 H 0.262 0.738 37 H 0.089 0.911 38 H 0.043 0.957 39 H 0.066 0.934 40 H 0.033 0.967 41 H 0.418 0.582 42 H 0.165 0.835 43 H 0.081 0.919 44 H 0.154 0.846 45 H 0.168 0.832 46 H 0.162 0.838 47 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.792 2.878 -26.635 26.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 C 0.021 3.979 4 N -0.333 5.333 5 C -0.391 4.391 6 H 0.052 0.948 7 C -0.219 4.219 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.190 1.190 11 H -0.244 1.244 12 H -0.169 1.169 13 C 0.003 3.997 14 C -0.010 4.010 15 N -0.355 5.355 16 C 0.307 3.693 17 O -0.441 6.441 18 C -0.023 4.023 19 H 0.146 0.854 20 C -0.036 4.036 21 O -0.218 6.218 22 C -0.019 4.019 23 C -0.135 4.135 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.148 4.148 27 C -0.022 4.022 28 O -0.225 6.225 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.052 0.948 41 H 0.256 0.744 42 H 0.183 0.817 43 H 0.099 0.901 44 H 0.172 0.828 45 H 0.185 0.815 46 H 0.180 0.820 47 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.945 3.559 -26.109 26.368 hybrid contribution 0.642 -0.852 0.844 1.360 sum -0.304 2.708 -25.266 25.412 Atomic orbital electron populations 1.21663 0.94165 1.01877 1.02074 1.22010 0.96472 0.98714 1.00701 1.21143 0.81550 0.95134 1.00077 1.44115 1.02084 1.86198 1.00900 1.18592 1.05958 1.22799 0.91713 0.94781 1.26182 0.96624 1.00381 0.98741 1.70038 1.09259 1.40682 1.39353 0.85870 0.78827 0.79888 0.78398 1.19005 1.24371 1.16913 1.21413 0.96829 0.93041 0.88459 1.21945 0.95385 1.00604 0.83022 1.45730 1.57588 1.08245 1.23984 1.20071 0.79408 0.84163 0.85646 1.90746 1.54932 1.32503 1.65967 1.22992 1.01050 0.84594 0.93660 0.85441 1.23711 0.92630 1.06262 0.80988 1.86319 1.63608 1.31952 1.39970 1.19253 1.00226 0.87771 0.94633 1.20830 1.00612 0.99697 0.92369 1.21392 0.97938 0.92075 1.01322 1.21329 0.99575 1.00981 0.90826 1.20766 0.99147 0.95896 0.99010 1.19389 1.01948 0.98084 0.82735 1.86376 1.82144 1.27691 1.26318 0.92279 0.93038 0.91519 0.92621 0.94647 0.94232 0.91364 0.92876 0.89268 0.93860 0.91558 0.94848 0.74448 0.81736 0.90112 0.82821 0.81483 0.82027 0.84824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.36 9.91 71.98 0.71 -2.65 16 2 C -0.14 -4.45 6.26 30.59 0.19 -4.26 16 3 C 0.15 5.20 5.67 86.38 0.49 5.69 16 4 N -0.61 -26.56 2.07 -702.02 -1.45 -28.02 16 5 C -0.26 -14.33 9.90 84.03 0.83 -13.50 16 6 H 0.03 2.14 8.06 -2.91 -0.02 2.12 16 7 C -0.02 -1.29 5.29 84.86 0.45 -0.84 16 8 N -0.95 -58.86 13.97 21.65 0.30 -58.56 16 9 Si 0.94 42.91 25.10 68.60 1.72 44.63 16 10 H -0.26 -10.87 6.68 99.48 0.66 -10.21 16 11 H -0.31 -15.00 7.11 99.48 0.71 -14.30 16 12 H -0.25 -10.29 7.11 99.48 0.71 -9.59 16 13 C 0.13 4.67 4.63 86.38 0.40 5.07 16 14 C 0.12 4.16 6.00 86.38 0.52 4.68 16 15 N -0.70 -19.26 5.53 -463.07 -2.56 -21.82 16 16 C 0.52 16.24 7.19 87.66 0.63 16.87 16 17 O -0.56 -23.66 16.52 15.82 0.26 -23.40 16 18 C 0.04 0.92 3.44 30.00 0.10 1.02 16 19 H 0.13 2.64 8.14 -2.39 -0.02 2.62 16 20 C 0.04 0.73 6.53 72.14 0.47 1.20 16 21 O -0.30 -6.32 10.42 -82.54 -0.86 -7.18 16 22 C 0.03 0.57 6.49 22.56 0.15 0.72 16 23 C -0.12 -1.89 9.96 22.37 0.22 -1.67 16 24 C -0.11 -1.36 10.04 22.26 0.22 -1.14 16 25 C -0.11 -1.56 10.04 22.26 0.22 -1.34 16 26 C -0.13 -2.75 9.96 22.37 0.22 -2.53 16 27 C 0.02 0.59 6.49 22.56 0.15 0.73 16 28 O -0.31 -9.47 9.62 -69.35 -0.67 -10.14 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.06 1.70 8.14 -2.38 -0.02 1.68 16 33 H 0.03 1.32 8.14 -2.39 -0.02 1.31 16 34 H 0.04 1.51 8.03 -2.39 -0.02 1.49 16 35 H 0.07 2.05 8.08 -2.39 -0.02 2.03 16 36 H 0.26 15.41 8.31 -92.70 -0.77 14.64 16 37 H 0.09 2.52 8.07 -2.38 -0.02 2.50 16 38 H 0.04 1.73 3.38 -2.39 -0.01 1.72 16 39 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 40 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 41 H 0.42 8.00 8.37 -92.70 -0.78 7.22 16 42 H 0.17 1.71 8.04 -2.39 -0.02 1.69 16 43 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 45 H 0.17 0.88 8.06 -2.91 -0.02 0.85 16 46 H 0.16 1.29 8.06 -2.91 -0.02 1.26 16 47 H 0.13 2.75 8.06 -2.91 -0.02 2.73 16 Total: -1.00 -78.61 387.76 2.88 -75.73 By element: Atomic # 1 Polarization: 20.55 SS G_CDS: 0.15 Total: 20.71 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: 5.98 Total: 8.05 kcal Atomic # 7 Polarization: -104.69 SS G_CDS: -3.71 Total: -108.40 kcal Atomic # 8 Polarization: -39.45 SS G_CDS: -1.27 Total: -40.72 kcal Atomic # 14 Polarization: 42.91 SS G_CDS: 1.72 Total: 44.63 kcal Total: -78.61 2.88 -75.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266577696.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.820 kcal (2) G-P(sol) polarization free energy of solvation -78.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds