Wall clock time and date at job start Tue Mar 31 2020 18:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 H 1.08999 * 109.47009 * 304.99639 * 3 2 1 5 5 C 1.53002 * 109.46774 * 185.00150 * 3 2 1 6 6 N 1.46503 * 109.46974 * 184.99920 * 5 3 2 7 7 C 1.34771 * 120.00248 * 179.97438 * 6 5 3 8 8 O 1.21590 * 120.00088 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.00399 * 180.02562 * 7 6 5 10 10 C 1.39703 * 120.04937 * 359.97438 * 9 7 6 11 11 C 1.37867 * 120.07476 * 179.97438 * 10 9 7 12 12 C 1.38771 * 119.91284 * 0.02562 * 11 10 9 13 13 C 1.39021 * 120.29957 * 0.02562 * 12 11 10 14 14 C 1.38055 * 120.21006 * 0.20093 * 13 12 11 15 15 O 1.36505 * 119.59260 * 179.97438 * 13 12 11 16 16 C 1.42901 * 115.93691 * 68.31327 * 15 13 12 17 17 C 1.52059 * 110.76749 * 275.60564 * 16 15 13 18 18 C 1.52064 * 112.36521 * 64.80039 * 17 16 15 19 19 O 1.36329 * 120.15321 * 179.97438 * 12 11 10 20 20 N 1.46499 * 109.47534 * 64.99736 * 3 2 1 21 21 C 1.36932 * 119.99964 * 275.00252 * 20 3 2 22 22 H 1.08004 * 120.00063 * 359.97438 * 21 20 3 23 23 C 1.38810 * 119.99772 * 179.97438 * 21 20 3 24 24 N 1.31622 * 120.00234 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46731 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46779 * 119.99799 * 25 23 21 28 28 H 1.48500 * 109.47269 * 240.00000 * 25 23 21 29 29 H 1.09001 * 109.47392 * 60.00372 * 1 2 3 30 30 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47487 * 300.00261 * 1 2 3 32 32 H 1.08994 * 109.46993 * 239.99636 * 2 1 3 33 33 H 1.08999 * 109.46881 * 119.99699 * 2 1 3 34 34 H 1.08992 * 109.47725 * 64.99732 * 5 3 2 35 35 H 1.09000 * 109.47020 * 304.99504 * 5 3 2 36 36 H 0.97003 * 119.99998 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.96086 * 359.97438 * 10 9 7 38 38 H 1.08001 * 120.04331 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.20068 * 179.79860 * 14 13 12 40 40 H 1.08997 * 109.21554 * 35.94039 * 16 15 13 41 41 H 1.08996 * 109.21486 * 155.27381 * 16 15 13 42 42 H 1.09000 * 108.90315 * 185.53762 * 17 16 15 43 43 H 1.09000 * 108.90596 * 304.15123 * 17 16 15 44 44 H 1.09002 * 109.21078 * 55.48388 * 18 17 16 45 45 H 1.09000 * 109.21451 * 174.80955 * 18 17 16 46 46 H 0.97000 * 119.99953 * 94.99826 * 20 3 2 47 47 H 0.97001 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0859 8 8 6.1654 2.1461 -0.2578 9 6 5.8876 4.4457 0.0353 10 6 4.9927 5.5002 0.2323 11 6 5.4610 6.7918 0.3461 12 6 6.8233 7.0437 0.2642 13 6 7.7191 5.9990 0.0672 14 6 7.2592 4.7029 -0.0526 15 8 9.0560 6.2633 -0.0117 16 6 9.6777 6.7074 1.1959 17 6 9.5047 8.2080 1.3711 18 6 8.0483 8.6049 1.5551 19 8 7.2917 8.3191 0.3756 20 7 1.6523 2.0976 1.2517 21 6 0.4155 2.6735 1.3687 22 1 -0.2741 2.6452 0.5379 23 6 0.0481 3.2937 2.5549 24 7 0.8883 3.3278 3.5675 25 14 -1.6389 4.0801 2.7142 26 1 -2.3881 3.9058 1.4440 27 1 -2.3851 3.4305 3.8217 28 1 -1.4846 5.5284 3.0038 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0377 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1308 37 1 3.9326 5.3032 0.2955 38 1 4.7687 7.6067 0.4980 39 1 7.9551 3.8918 -0.2089 40 1 9.2245 6.1926 2.0430 41 1 10.7410 6.4706 1.1601 42 1 10.0713 8.5291 2.2451 43 1 9.8986 8.7142 0.4898 44 1 7.6287 8.0503 2.3944 45 1 7.9916 9.6726 1.7674 46 1 2.2718 2.1233 1.9977 47 1 0.6316 3.7615 4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267807505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:33 Heat of formation + Delta-G solvation = -78.144932 kcal Electronic energy + Delta-G solvation = -28846.625190 eV Core-core repulsion = 24802.208749 eV Total energy + Delta-G solvation = -4044.416442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.08451 -39.57951 -37.67936 -37.38410 -36.60747 -33.85292 -33.14623 -32.40137 -30.85183 -30.00042 -29.51247 -27.69759 -26.85042 -24.28256 -23.29329 -22.77778 -22.21339 -21.84756 -20.30037 -19.91187 -18.75665 -17.76902 -17.22138 -17.12336 -16.37411 -15.85827 -15.63425 -15.38677 -15.18739 -14.64031 -14.39256 -14.27173 -14.09345 -14.01995 -13.96260 -13.52250 -13.21371 -13.07047 -13.00729 -12.71712 -12.25800 -12.02942 -11.88242 -11.55453 -11.46359 -11.11538 -11.00500 -10.93405 -10.77196 -10.70337 -10.46248 -10.21856 -10.17663 -10.03784 -9.72412 -9.57506 -9.02503 -9.00317 -8.79078 -8.54209 -7.08139 -5.86026 -3.15423 0.59831 1.07422 2.71327 3.17258 3.34786 3.36285 3.43118 3.44733 3.60255 3.84235 4.31651 4.38795 4.50241 4.68180 4.79069 4.87462 4.95183 5.01152 5.04240 5.09974 5.17845 5.35825 5.37296 5.40401 5.42456 5.53249 5.61935 5.72420 5.88862 5.92702 5.94398 5.98215 6.11357 6.14488 6.17756 6.32692 6.39875 6.51453 6.55124 6.58305 6.84495 6.88062 6.99597 7.21765 7.34744 7.63144 7.86257 8.31100 8.47689 9.43393 9.98025 10.34135 11.35684 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002968 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.957922 B = 9430.570318 C =11079.004541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.134 4.134 3 C 0.162 3.838 4 H 0.055 0.945 5 C 0.114 3.886 6 N -0.704 5.704 7 C 0.556 3.444 8 O -0.549 6.549 9 C -0.121 4.121 10 C -0.069 4.069 11 C -0.121 4.121 12 C 0.086 3.914 13 C 0.052 3.948 14 C -0.058 4.058 15 O -0.317 6.317 16 C 0.057 3.943 17 C -0.186 4.186 18 C 0.059 3.941 19 O -0.320 6.320 20 N -0.722 5.722 21 C -0.237 4.237 22 H 0.074 0.926 23 C -0.010 4.010 24 N -0.929 5.929 25 Si 0.901 3.099 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 H 0.040 0.960 30 H 0.032 0.968 31 H 0.084 0.916 32 H 0.043 0.957 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.410 0.590 37 H 0.144 0.856 38 H 0.142 0.858 39 H 0.147 0.853 40 H 0.059 0.941 41 H 0.104 0.896 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.060 0.940 45 H 0.105 0.895 46 H 0.385 0.615 47 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.144 7.767 -4.821 16.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.175 4.175 3 C 0.052 3.948 4 H 0.073 0.927 5 C -0.010 4.010 6 N -0.356 5.356 7 C 0.342 3.658 8 O -0.429 6.429 9 C -0.124 4.124 10 C -0.088 4.088 11 C -0.140 4.140 12 C 0.042 3.958 13 C 0.008 3.992 14 C -0.077 4.077 15 O -0.233 6.233 16 C -0.018 4.018 17 C -0.224 4.224 18 C -0.016 4.016 19 O -0.236 6.236 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.092 0.908 23 C -0.207 4.207 24 N -0.577 5.577 25 Si 0.733 3.267 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.103 0.897 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.248 0.752 37 H 0.161 0.839 38 H 0.160 0.840 39 H 0.165 0.835 40 H 0.078 0.922 41 H 0.122 0.878 42 H 0.109 0.891 43 H 0.102 0.898 44 H 0.079 0.921 45 H 0.123 0.877 46 H 0.219 0.781 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 14.590 7.317 -5.240 17.143 hybrid contribution -1.055 0.776 0.916 1.598 sum 13.535 8.093 -4.324 16.352 Atomic orbital electron populations 1.21770 0.95707 0.99655 1.03248 1.22063 0.96977 0.98331 1.00082 1.20581 0.89851 0.92912 0.91464 0.92744 1.21721 0.95679 0.82279 1.01330 1.45898 1.06766 1.11086 1.71818 1.18036 0.82725 0.87873 0.77153 1.90752 1.56155 1.45680 1.50294 1.19929 0.93478 0.93831 1.05181 1.21416 1.00412 0.91325 0.95629 1.21054 0.93793 0.97540 1.01590 1.19403 0.92195 0.84028 1.00207 1.18957 0.83820 0.92046 1.04368 1.21130 0.95023 0.95208 0.96364 1.86394 1.18092 1.85584 1.33269 1.22653 0.98768 0.93775 0.86555 1.22470 0.98003 0.97683 1.04266 1.22679 0.90460 1.02155 0.86295 1.86353 1.70340 1.25027 1.41881 1.42479 1.16808 1.65863 1.11306 1.19251 0.91947 1.27613 0.97999 0.90819 1.24727 0.98004 1.01594 0.96360 1.69673 1.35112 1.48925 1.03945 0.86210 0.84173 0.78866 0.77493 1.20529 1.21949 1.21929 0.94107 0.94866 0.89673 0.93792 0.92494 0.91604 0.91602 0.75206 0.83863 0.83982 0.83519 0.92229 0.87795 0.89133 0.89824 0.92115 0.87737 0.78079 0.93548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 9.18 37.16 0.34 -2.21 16 2 C -0.13 -2.25 5.61 -26.73 -0.15 -2.40 16 3 C 0.16 2.90 2.59 -67.93 -0.18 2.72 16 4 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 5 C 0.11 1.90 5.23 -4.04 -0.02 1.87 16 6 N -0.70 -11.56 5.34 -61.33 -0.33 -11.89 16 7 C 0.56 9.44 7.76 -12.44 -0.10 9.34 16 8 O -0.55 -10.75 16.34 5.29 0.09 -10.67 16 9 C -0.12 -1.80 5.88 -104.94 -0.62 -2.41 16 10 C -0.07 -0.92 9.53 -39.17 -0.37 -1.30 16 11 C -0.12 -1.52 9.98 -39.52 -0.39 -1.91 16 12 C 0.09 1.13 5.74 -39.09 -0.22 0.91 16 13 C 0.05 0.71 5.72 -39.36 -0.23 0.48 16 14 C -0.06 -0.83 9.54 -39.06 -0.37 -1.20 16 15 O -0.32 -4.05 10.16 -36.80 -0.37 -4.42 16 16 C 0.06 0.51 6.51 36.68 0.24 0.75 16 17 C -0.19 -1.37 5.92 -27.69 -0.16 -1.54 16 18 C 0.06 0.51 6.51 36.68 0.24 0.75 16 19 O -0.32 -3.92 10.16 -36.22 -0.37 -4.29 16 20 N -0.72 -15.88 4.51 -53.43 -0.24 -16.12 16 21 C -0.24 -5.81 7.75 -15.06 -0.12 -5.93 16 22 H 0.07 1.78 7.32 -52.48 -0.38 1.39 16 23 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 24 N -0.93 -25.98 13.06 55.49 0.72 -25.26 16 25 Si 0.90 20.96 29.55 -169.99 -5.02 15.94 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 28 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 29 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 1.75 5.99 -51.93 -0.31 1.44 16 32 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.41 6.65 6.15 -40.82 -0.25 6.40 16 37 H 0.14 1.83 6.38 -52.49 -0.34 1.49 16 38 H 0.14 1.52 8.06 -52.49 -0.42 1.10 16 39 H 0.15 2.10 7.65 -52.49 -0.40 1.69 16 40 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.51 7.93 -51.93 -0.41 0.10 16 45 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 46 H 0.39 9.32 7.80 -40.82 -0.32 9.00 16 47 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 382.44 15.07 5.76 5.76 Total: -1.00 -30.23 382.44 -9.00 -39.23 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.03 Total: 14.17 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.21 Total: -2.44 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.16 Total: -53.27 kcal Atomic # 8 Polarization: -18.72 SS G_CDS: -0.66 Total: -19.38 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.23 -9.00 -39.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267807505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.920 kcal (2) G-P(sol) polarization free energy of solvation -30.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds