Wall clock time and date at job start Tue Mar 31 2020 18:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.46868 * 2 1 4 4 H 1.08999 * 109.47009 * 304.99639 * 3 2 1 5 5 C 1.53002 * 109.46774 * 185.00150 * 3 2 1 6 6 N 1.46503 * 109.46974 * 184.99920 * 5 3 2 7 7 C 1.34771 * 120.00248 * 179.97438 * 6 5 3 8 8 O 1.21590 * 120.00088 * 0.02562 * 7 6 5 9 9 C 1.47601 * 120.00399 * 180.02562 * 7 6 5 10 10 C 1.39703 * 120.04937 * 359.97438 * 9 7 6 11 11 C 1.37867 * 120.07476 * 179.97438 * 10 9 7 12 12 C 1.38771 * 119.91284 * 0.02562 * 11 10 9 13 13 C 1.39021 * 120.29957 * 0.02562 * 12 11 10 14 14 C 1.38055 * 120.21006 * 0.20093 * 13 12 11 15 15 O 1.36505 * 119.59260 * 179.97438 * 13 12 11 16 16 C 1.42901 * 115.93691 * 68.31327 * 15 13 12 17 17 C 1.52059 * 110.76749 * 275.60564 * 16 15 13 18 18 C 1.52064 * 112.36521 * 64.80039 * 17 16 15 19 19 O 1.36329 * 120.15321 * 179.97438 * 12 11 10 20 20 N 1.46499 * 109.47534 * 64.99736 * 3 2 1 21 21 C 1.36932 * 119.99964 * 275.00252 * 20 3 2 22 22 H 1.08004 * 120.00063 * 359.97438 * 21 20 3 23 23 C 1.38810 * 119.99772 * 179.97438 * 21 20 3 24 24 N 1.31622 * 120.00234 * 359.97438 * 23 21 20 25 25 Si 1.86809 * 120.00029 * 179.97438 * 23 21 20 26 26 H 1.48498 * 109.46731 * 0.02562 * 25 23 21 27 27 H 1.48504 * 109.46779 * 119.99799 * 25 23 21 28 28 H 1.48500 * 109.47269 * 240.00000 * 25 23 21 29 29 H 1.09001 * 109.47392 * 60.00372 * 1 2 3 30 30 H 1.08999 * 109.47191 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47487 * 300.00261 * 1 2 3 32 32 H 1.08994 * 109.46993 * 239.99636 * 2 1 3 33 33 H 1.08999 * 109.46881 * 119.99699 * 2 1 3 34 34 H 1.08992 * 109.47725 * 64.99732 * 5 3 2 35 35 H 1.09000 * 109.47020 * 304.99504 * 5 3 2 36 36 H 0.97003 * 119.99998 * 359.97438 * 6 5 3 37 37 H 1.08001 * 119.96086 * 359.97438 * 10 9 7 38 38 H 1.08001 * 120.04331 * 179.97438 * 11 10 9 39 39 H 1.08000 * 120.20068 * 179.79860 * 14 13 12 40 40 H 1.08997 * 109.21554 * 35.94039 * 16 15 13 41 41 H 1.08996 * 109.21486 * 155.27381 * 16 15 13 42 42 H 1.09000 * 108.90315 * 185.53762 * 17 16 15 43 43 H 1.09000 * 108.90596 * 304.15123 * 17 16 15 44 44 H 1.09002 * 109.21078 * 55.48388 * 18 17 16 45 45 H 1.09000 * 109.21451 * 174.80955 * 18 17 16 46 46 H 0.97000 * 119.99953 * 94.99826 * 20 3 2 47 47 H 0.97001 * 119.99715 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 -0.8418 5 6 3.5648 1.4443 -0.1258 6 7 4.0630 2.8168 -0.0060 7 6 5.3856 3.0630 -0.0859 8 8 6.1654 2.1461 -0.2578 9 6 5.8876 4.4457 0.0353 10 6 4.9927 5.5002 0.2323 11 6 5.4610 6.7918 0.3461 12 6 6.8233 7.0437 0.2642 13 6 7.7191 5.9990 0.0672 14 6 7.2592 4.7029 -0.0526 15 8 9.0560 6.2633 -0.0117 16 6 9.6777 6.7074 1.1959 17 6 9.5047 8.2080 1.3711 18 6 8.0483 8.6049 1.5551 19 8 7.2917 8.3191 0.3756 20 7 1.6523 2.0976 1.2517 21 6 0.4155 2.6735 1.3687 22 1 -0.2741 2.6452 0.5379 23 6 0.0481 3.2937 2.5549 24 7 0.8883 3.3278 3.5675 25 14 -1.6389 4.0801 2.7142 26 1 -2.3881 3.9058 1.4440 27 1 -2.3851 3.4305 3.8217 28 1 -1.4846 5.5284 3.0038 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8499 1.0377 -1.0960 35 1 3.9953 0.8312 0.6659 36 1 3.4409 3.5484 0.1308 37 1 3.9326 5.3032 0.2955 38 1 4.7687 7.6067 0.4980 39 1 7.9551 3.8918 -0.2089 40 1 9.2245 6.1926 2.0430 41 1 10.7410 6.4706 1.1601 42 1 10.0713 8.5291 2.2451 43 1 9.8986 8.7142 0.4898 44 1 7.6287 8.0503 2.3944 45 1 7.9916 9.6726 1.7674 46 1 2.2718 2.1233 1.9977 47 1 0.6316 3.7615 4.3963 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267807505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:32 Heat of formation + Delta-G solvation = -97.071121 kcal Electronic energy + Delta-G solvation = -28847.445891 eV Core-core repulsion = 24802.208749 eV Total energy + Delta-G solvation = -4045.237143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.05124 -40.84288 -38.58269 -38.55855 -38.01311 -35.33565 -34.21512 -33.83777 -31.89641 -31.51575 -30.80835 -29.11292 -27.62028 -25.80941 -24.79669 -23.78561 -23.49497 -22.59822 -21.67521 -21.24529 -19.78603 -19.19662 -18.64787 -18.10709 -17.50251 -16.97719 -16.94397 -16.44374 -16.31019 -16.14654 -15.64952 -15.51564 -15.17791 -15.09522 -14.92750 -14.88510 -14.55333 -14.35696 -14.17070 -13.98642 -13.76275 -13.05089 -12.94605 -12.88840 -12.78251 -12.74134 -12.35664 -12.33839 -12.05637 -11.85616 -11.83622 -11.61097 -11.43928 -11.31508 -11.17143 -11.00498 -10.85577 -10.16497 -10.00935 -9.63373 -8.95134 -7.84903 -5.11918 -0.48009 0.04268 1.51013 1.54443 1.57669 1.61240 2.07850 2.38909 2.46560 2.61978 2.76804 3.48925 3.60022 3.66164 3.70356 3.84616 3.90027 3.94503 4.01827 4.13823 4.18695 4.20447 4.35327 4.35970 4.40131 4.50233 4.58752 4.62575 4.73305 4.77576 4.83797 4.89894 4.96180 5.07191 5.08543 5.10714 5.11650 5.14963 5.22798 5.30007 5.46415 5.58607 5.65096 5.74617 6.02838 6.35232 6.41983 6.52135 7.13592 7.43602 8.14473 8.39938 9.37950 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013143 B = 0.002968 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2129.957922 B = 9430.570318 C =11079.004541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.130 4.130 3 C 0.164 3.836 4 H 0.061 0.939 5 C 0.121 3.879 6 N -0.701 5.701 7 C 0.556 3.444 8 O -0.580 6.580 9 C -0.135 4.135 10 C -0.067 4.067 11 C -0.120 4.120 12 C 0.089 3.911 13 C 0.050 3.950 14 C -0.065 4.065 15 O -0.335 6.335 16 C 0.046 3.954 17 C -0.181 4.181 18 C 0.048 3.952 19 O -0.334 6.334 20 N -0.728 5.728 21 C -0.214 4.214 22 H 0.080 0.920 23 C -0.070 4.070 24 N -0.966 5.966 25 Si 0.956 3.044 26 H -0.267 1.267 27 H -0.305 1.305 28 H -0.298 1.298 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.049 0.951 32 H 0.075 0.925 33 H 0.045 0.955 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.412 0.588 37 H 0.148 0.852 38 H 0.162 0.838 39 H 0.140 0.860 40 H 0.059 0.941 41 H 0.127 0.873 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.062 0.938 45 H 0.130 0.870 46 H 0.373 0.627 47 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.370 8.709 -5.706 17.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.171 4.171 3 C 0.056 3.944 4 H 0.079 0.921 5 C -0.004 4.004 6 N -0.352 5.352 7 C 0.344 3.656 8 O -0.462 6.462 9 C -0.138 4.138 10 C -0.086 4.086 11 C -0.138 4.138 12 C 0.044 3.956 13 C 0.006 3.994 14 C -0.085 4.085 15 O -0.252 6.252 16 C -0.028 4.028 17 C -0.218 4.218 18 C -0.026 4.026 19 O -0.251 6.251 20 N -0.368 5.368 21 C -0.345 4.345 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.617 5.617 25 Si 0.787 3.213 26 H -0.191 1.191 27 H -0.233 1.233 28 H -0.225 1.225 29 H 0.068 0.932 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.093 0.907 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.250 0.750 37 H 0.165 0.835 38 H 0.180 0.820 39 H 0.158 0.842 40 H 0.078 0.922 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.098 0.902 44 H 0.080 0.920 45 H 0.148 0.852 46 H 0.205 0.795 47 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 14.805 8.252 -6.172 18.038 hybrid contribution -1.019 0.491 1.140 1.606 sum 13.785 8.743 -5.033 17.083 Atomic orbital electron populations 1.21699 0.95933 1.00577 1.01841 1.21989 0.96656 0.97318 1.01088 1.20723 0.90669 0.93397 0.89647 0.92079 1.21651 0.94565 0.82364 1.01775 1.45876 1.06743 1.11070 1.71534 1.18326 0.82489 0.88477 0.76317 1.90725 1.56785 1.46802 1.51923 1.19783 0.93976 0.93015 1.07056 1.21444 1.00334 0.91387 0.95406 1.21245 0.94031 0.97628 1.00899 1.19517 0.92341 0.84398 0.99329 1.19000 0.84543 0.91829 1.04040 1.21101 0.94766 0.95598 0.97006 1.86355 1.17620 1.85913 1.35355 1.23003 0.99681 0.94963 0.85175 1.22456 0.97529 0.96297 1.05567 1.23034 0.90765 1.03807 0.84990 1.86322 1.70947 1.24227 1.43595 1.42593 1.15845 1.66076 1.12329 1.19520 0.92430 1.25147 0.97452 0.90170 1.25318 1.00705 1.03519 0.96657 1.69810 1.36660 1.50997 1.04274 0.85327 0.81171 0.77488 0.77315 1.19123 1.23266 1.22526 0.93167 0.92936 0.93202 0.90654 0.93583 0.89912 0.92786 0.75035 0.83464 0.82032 0.84218 0.92247 0.85533 0.85827 0.90228 0.91971 0.85178 0.79519 0.94481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.69 9.18 71.98 0.66 -4.03 16 2 C -0.13 -4.11 5.61 30.59 0.17 -3.94 16 3 C 0.16 5.65 2.59 44.99 0.12 5.77 16 4 H 0.06 2.06 8.08 -2.39 -0.02 2.04 16 5 C 0.12 3.91 5.23 86.38 0.45 4.36 16 6 N -0.70 -22.92 5.34 -466.21 -2.49 -25.41 16 7 C 0.56 19.10 7.76 86.72 0.67 19.77 16 8 O -0.58 -23.10 16.34 -4.00 -0.07 -23.17 16 9 C -0.14 -4.06 5.88 -20.07 -0.12 -4.18 16 10 C -0.07 -1.77 9.53 22.54 0.21 -1.55 16 11 C -0.12 -2.88 9.98 22.31 0.22 -2.66 16 12 C 0.09 2.25 5.74 22.59 0.13 2.38 16 13 C 0.05 1.35 5.72 22.41 0.13 1.48 16 14 C -0.07 -1.90 9.54 22.61 0.22 -1.69 16 15 O -0.34 -8.38 10.16 -84.62 -0.86 -9.24 16 16 C 0.05 0.74 6.51 71.67 0.47 1.21 16 17 C -0.18 -2.22 5.92 29.98 0.18 -2.04 16 18 C 0.05 0.72 6.51 71.67 0.47 1.18 16 19 O -0.33 -7.69 10.16 -82.56 -0.84 -8.53 16 20 N -0.73 -31.79 4.51 -322.94 -1.46 -33.25 16 21 C -0.21 -10.35 7.75 84.03 0.65 -9.70 16 22 H 0.08 3.75 7.32 -2.91 -0.02 3.73 16 23 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 24 N -0.97 -55.00 13.06 21.65 0.28 -54.72 16 25 Si 0.96 43.26 29.55 68.60 2.03 45.29 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.30 -14.27 7.11 99.48 0.71 -13.57 16 28 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 29 H 0.05 1.52 8.14 -2.39 -0.02 1.51 16 30 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.05 1.99 5.99 -2.39 -0.01 1.97 16 32 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.41 13.25 6.15 -92.71 -0.57 12.68 16 37 H 0.15 3.71 6.38 -2.91 -0.02 3.69 16 38 H 0.16 3.19 8.06 -2.91 -0.02 3.16 16 39 H 0.14 4.17 7.65 -2.91 -0.02 4.15 16 40 H 0.06 0.96 7.93 -2.39 -0.02 0.94 16 41 H 0.13 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.06 0.92 7.93 -2.39 -0.02 0.90 16 45 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.37 18.25 7.80 -92.71 -0.72 17.53 16 47 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -65.27 382.44 1.40 -63.86 By element: Atomic # 1 Polarization: 42.28 SS G_CDS: -0.29 Total: 41.98 kcal Atomic # 6 Polarization: -1.92 SS G_CDS: 5.10 Total: 3.18 kcal Atomic # 7 Polarization: -109.72 SS G_CDS: -3.66 Total: -113.38 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.76 Total: -40.94 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -65.27 1.40 -63.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267807505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.207 kcal (2) G-P(sol) polarization free energy of solvation -65.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds