Wall clock time and date at job start Tue Mar 31 2020 18:05:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.08994 * 109.47693 * 305.00526 * 3 2 1 5 5 C 1.52999 * 109.47159 * 184.99846 * 3 2 1 6 6 N 1.46505 * 109.47192 * 185.00359 * 5 3 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 3 8 8 O 1.21563 * 120.00284 * 359.97438 * 7 6 5 9 9 C 1.47835 * 119.99833 * 179.72331 * 7 6 5 10 10 N 1.34572 * 126.01821 * 359.96839 * 9 7 6 11 11 C 1.30873 * 107.28459 * 179.89260 * 10 9 7 12 12 C 1.50701 * 126.20447 * 180.12887 * 11 10 9 13 13 N 1.34886 * 107.58936 * 0.35976 * 11 10 9 14 14 C 1.40109 * 125.76913 * 179.76631 * 13 11 10 15 15 N 1.33628 * 125.59244 * 179.97438 * 14 13 11 16 16 C 1.30804 * 109.78962 * 179.97438 * 15 14 13 17 17 N 1.34438 * 108.19702 * 0.02562 * 16 15 14 18 18 H 0.96996 * 126.77791 * 179.97438 * 17 16 15 19 19 N 1.31145 * 125.59808 * 359.66963 * 14 13 11 20 20 N 1.28854 * 108.46031 * 359.77209 * 13 11 10 21 21 N 1.46501 * 109.46734 * 65.00427 * 3 2 1 22 22 C 1.36934 * 120.00374 * 274.99451 * 21 3 2 23 23 H 1.08009 * 119.99521 * 0.02562 * 22 21 3 24 24 C 1.38815 * 120.00527 * 179.97438 * 22 21 3 25 25 N 1.31622 * 119.99529 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00112 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47025 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47353 * 120.00143 * 26 24 22 29 29 H 1.48501 * 109.46858 * 240.00137 * 26 24 22 30 30 H 1.09003 * 109.46604 * 299.99916 * 1 2 3 31 31 H 1.08995 * 109.47134 * 59.99132 * 1 2 3 32 32 H 1.08998 * 109.46705 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46642 * 240.01049 * 2 1 3 34 34 H 1.08994 * 109.47570 * 120.00556 * 2 1 3 35 35 H 1.09003 * 109.46803 * 65.01029 * 5 3 2 36 36 H 1.08993 * 109.47533 * 305.00748 * 5 3 2 37 37 H 0.97000 * 119.99792 * 0.02562 * 6 5 3 38 38 H 1.08995 * 109.47645 * 270.27789 * 12 11 10 39 39 H 1.09008 * 109.46832 * 30.27605 * 12 11 10 40 40 H 1.09001 * 109.47424 * 150.26889 * 12 11 10 41 41 H 1.08001 * 125.90341 * 180.02562 * 16 15 14 42 42 H 0.97009 * 120.00100 * 95.00124 * 21 3 2 43 43 H 0.97001 * 119.99534 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0058 7 6 5.3857 3.0631 -0.0867 8 8 6.1653 2.1463 -0.2586 9 6 5.8879 4.4488 0.0281 10 7 5.1369 5.5500 0.2132 11 6 5.9520 6.5726 0.2641 12 6 5.5602 8.0143 0.4618 13 7 7.2060 6.1027 0.1023 14 6 8.3747 6.8754 0.0890 15 7 9.6155 6.4060 -0.0711 16 6 10.4713 7.3946 -0.0335 17 7 9.7862 8.5359 0.1550 18 1 10.1554 9.4301 0.2245 19 7 8.4299 8.1785 0.2261 20 7 7.1473 4.8232 -0.0382 21 7 1.6525 2.0974 1.2519 22 6 0.4157 2.6734 1.3690 23 1 -0.2742 2.6446 0.5385 24 6 0.0483 3.2935 2.5554 25 7 0.8890 3.3281 3.5676 26 14 -1.6391 4.0786 2.7153 27 1 -2.3883 3.9048 1.4450 28 1 -2.3845 3.4287 3.8231 29 1 -1.4856 5.5270 3.0048 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8499 1.0379 -1.0961 36 1 3.9954 0.8311 0.6658 37 1 3.4410 3.5484 0.1317 38 1 5.3776 8.4775 -0.5078 39 1 4.6536 8.0649 1.0651 40 1 6.3656 8.5431 0.9714 41 1 11.5430 7.3089 -0.1361 42 1 2.2721 2.1230 1.9979 43 1 0.6323 3.7617 4.3965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267815520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:40 Heat of formation + Delta-G solvation = 174.296346 kcal Electronic energy + Delta-G solvation = -28119.180077 eV Core-core repulsion = 24046.755470 eV Total energy + Delta-G solvation = -4072.424608 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.85379 -42.70569 -39.15007 -36.62787 -35.08679 -33.74072 -33.43680 -32.79262 -32.28750 -31.16813 -29.69320 -28.35659 -28.05968 -25.34061 -24.17727 -23.47441 -22.52834 -22.04951 -20.68312 -20.20196 -19.76467 -19.15766 -18.06220 -17.37350 -17.25525 -16.63598 -15.82504 -15.58436 -15.52291 -15.21157 -14.48212 -14.28172 -13.92476 -13.75398 -13.37392 -13.21854 -13.10154 -12.94032 -12.63464 -12.56802 -12.11952 -11.94153 -11.65845 -11.37321 -10.91090 -10.83345 -10.81691 -10.79869 -10.69594 -10.54008 -10.37612 -10.12506 -10.11942 -9.97986 -9.87319 -9.46659 -9.42853 -8.88875 -8.60177 -6.95304 -5.73121 -3.02092 0.45525 1.10773 1.32035 1.97233 2.20275 2.48966 3.15380 3.45223 3.51363 3.53232 3.56602 3.64817 3.84459 4.00230 4.47165 4.61160 4.83434 5.00732 5.23128 5.30225 5.38114 5.46102 5.51735 5.63264 5.64712 5.88720 5.99030 6.01742 6.02877 6.09170 6.20805 6.31805 6.39977 6.48847 6.59236 6.64126 6.65778 6.89938 7.08567 7.17402 7.30538 7.74556 7.76912 8.06980 8.43552 8.50992 9.55783 10.10830 10.46629 11.48844 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.002821 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.419979 B = 9923.036523 C =11509.553266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.133 4.133 3 C 0.163 3.837 4 H 0.056 0.944 5 C 0.115 3.885 6 N -0.686 5.686 7 C 0.611 3.389 8 O -0.526 6.526 9 C 0.171 3.829 10 N -0.457 5.457 11 C 0.248 3.752 12 C -0.075 4.075 13 N -0.235 5.235 14 C 0.465 3.535 15 N -0.519 5.519 16 C 0.292 3.708 17 N -0.468 5.468 18 H 0.452 0.548 19 N -0.295 5.295 20 N -0.230 5.230 21 N -0.721 5.721 22 C -0.234 4.234 23 H 0.074 0.926 24 C -0.011 4.011 25 N -0.928 5.928 26 Si 0.902 3.098 27 H -0.280 1.280 28 H -0.294 1.294 29 H -0.293 1.293 30 H 0.085 0.915 31 H 0.040 0.960 32 H 0.032 0.968 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.421 0.579 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.095 0.905 41 H 0.239 0.761 42 H 0.385 0.615 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.129 12.705 -8.471 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.052 3.948 4 H 0.074 0.926 5 C -0.009 4.009 6 N -0.339 5.339 7 C 0.391 3.609 8 O -0.401 6.401 9 C -0.111 4.111 10 N -0.183 5.183 11 C -0.028 4.028 12 C -0.134 4.134 13 N -0.029 5.029 14 C 0.095 3.905 15 N -0.248 5.248 16 C -0.008 4.008 17 N -0.189 5.189 18 H 0.300 0.700 19 N -0.131 5.131 20 N -0.064 5.064 21 N -0.363 5.363 22 C -0.365 4.365 23 H 0.091 0.909 24 C -0.207 4.207 25 N -0.576 5.576 26 Si 0.733 3.267 27 H -0.206 1.206 28 H -0.221 1.221 29 H -0.220 1.220 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.051 0.949 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.260 0.740 38 H 0.112 0.888 39 H 0.123 0.877 40 H 0.113 0.887 41 H 0.255 0.745 42 H 0.220 0.780 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 18.069 11.637 -8.644 23.166 hybrid contribution -0.392 1.558 0.627 1.725 sum 17.677 13.196 -8.018 23.471 Atomic orbital electron populations 1.21769 0.95721 0.99585 1.03289 1.22067 0.96970 0.98291 1.00089 1.20574 0.89622 0.92946 0.91612 0.92639 1.21807 0.95909 0.81637 1.01562 1.45700 1.05941 1.11636 1.70594 1.16170 0.83198 0.83340 0.78167 1.90811 1.56252 1.43401 1.49591 1.24133 0.86047 0.95998 1.04917 1.71548 1.30085 0.96936 1.19690 1.25348 0.79093 0.99311 0.99018 1.20532 1.04269 0.83984 1.04654 1.43189 1.03845 1.04291 1.51577 1.19373 0.85254 0.86018 0.99842 1.70367 0.97755 1.32010 1.24677 1.26283 1.00503 0.80195 0.93777 1.48034 1.03429 1.11556 1.55873 0.70011 1.78255 0.95613 1.10221 1.29012 1.74685 1.21339 0.91445 1.18954 1.42463 1.16836 1.65799 1.11228 1.19232 0.91788 1.27594 0.97904 0.90853 1.24725 0.97964 1.01602 0.96450 1.69681 1.35022 1.48961 1.03928 0.86199 0.84210 0.78911 0.77353 1.20576 1.22084 1.21974 0.89635 0.94111 0.94911 0.93777 0.92446 0.91324 0.91300 0.74032 0.88794 0.87658 0.88669 0.74477 0.78036 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 9.18 37.16 0.34 -2.30 16 2 C -0.13 -2.34 5.61 -26.73 -0.15 -2.49 16 3 C 0.16 3.10 2.59 -67.93 -0.18 2.93 16 4 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 5 C 0.11 2.05 5.23 -4.04 -0.02 2.03 16 6 N -0.69 -13.01 5.39 -61.25 -0.33 -13.34 16 7 C 0.61 12.26 7.83 -12.33 -0.10 12.16 16 8 O -0.53 -11.62 17.09 5.31 0.09 -11.53 16 9 C 0.17 3.29 7.96 -156.31 -1.24 2.04 16 10 N -0.46 -8.16 11.09 -8.47 -0.09 -8.25 16 11 C 0.25 3.71 7.94 -155.25 -1.23 2.48 16 12 C -0.08 -0.76 9.84 36.01 0.35 -0.40 16 13 N -0.24 -3.73 3.52 -10.92 -0.04 -3.77 16 14 C 0.46 5.99 8.74 -320.52 -2.80 3.19 16 15 N -0.52 -5.99 11.20 -14.86 -0.17 -6.16 16 16 C 0.29 1.44 13.12 -90.67 -1.19 0.25 16 17 N -0.47 -2.02 7.44 29.53 0.22 -1.80 16 18 H 0.45 -0.11 8.96 -182.34 -1.63 -1.74 16 19 N -0.30 -2.76 10.41 30.08 0.31 -2.45 16 20 N -0.23 -4.33 12.03 32.08 0.39 -3.95 16 21 N -0.72 -16.93 4.51 -53.42 -0.24 -17.17 16 22 C -0.23 -6.06 7.75 -15.06 -0.12 -6.18 16 23 H 0.07 1.86 7.32 -52.48 -0.38 1.47 16 24 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 25 N -0.93 -27.34 13.06 55.49 0.72 -26.62 16 26 Si 0.90 21.90 29.55 -169.99 -5.02 16.87 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 29 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 30 H 0.08 1.82 5.99 -51.93 -0.31 1.51 16 31 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 37 H 0.42 8.33 7.85 -40.82 -0.32 8.01 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.10 1.02 8.14 -51.92 -0.42 0.59 16 40 H 0.09 0.84 6.33 -51.93 -0.33 0.52 16 41 H 0.24 -0.24 8.06 -52.49 -0.42 -0.66 16 42 H 0.39 9.97 7.80 -40.82 -0.32 9.65 16 43 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 371.72 15.07 5.60 5.60 Total: -1.00 -37.34 371.72 -11.64 -48.98 By element: Atomic # 1 Polarization: 16.93 SS G_CDS: -6.66 Total: 10.28 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: -6.43 Total: 13.30 kcal Atomic # 7 Polarization: -84.27 SS G_CDS: 0.77 Total: -83.50 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.34 -11.64 -48.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267815520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 223.278 kcal (2) G-P(sol) polarization free energy of solvation -37.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 185.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 174.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds