Wall clock time and date at job start Tue Mar 31 2020 18:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.47006 * 2 1 4 4 H 1.08994 * 109.47693 * 305.00526 * 3 2 1 5 5 C 1.52999 * 109.47159 * 184.99846 * 3 2 1 6 6 N 1.46505 * 109.47192 * 185.00359 * 5 3 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 3 8 8 O 1.21563 * 120.00284 * 359.97438 * 7 6 5 9 9 C 1.47835 * 119.99833 * 179.72331 * 7 6 5 10 10 N 1.34572 * 126.01821 * 359.96839 * 9 7 6 11 11 C 1.30873 * 107.28459 * 179.89260 * 10 9 7 12 12 C 1.50701 * 126.20447 * 180.12887 * 11 10 9 13 13 N 1.34886 * 107.58936 * 0.35976 * 11 10 9 14 14 C 1.40109 * 125.76913 * 179.76631 * 13 11 10 15 15 N 1.33628 * 125.59244 * 179.97438 * 14 13 11 16 16 C 1.30804 * 109.78962 * 179.97438 * 15 14 13 17 17 N 1.34438 * 108.19702 * 0.02562 * 16 15 14 18 18 H 0.96996 * 126.77791 * 179.97438 * 17 16 15 19 19 N 1.31145 * 125.59808 * 359.66963 * 14 13 11 20 20 N 1.28854 * 108.46031 * 359.77209 * 13 11 10 21 21 N 1.46501 * 109.46734 * 65.00427 * 3 2 1 22 22 C 1.36934 * 120.00374 * 274.99451 * 21 3 2 23 23 H 1.08009 * 119.99521 * 0.02562 * 22 21 3 24 24 C 1.38815 * 120.00527 * 179.97438 * 22 21 3 25 25 N 1.31622 * 119.99529 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00112 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47025 * 359.97438 * 26 24 22 28 28 H 1.48501 * 109.47353 * 120.00143 * 26 24 22 29 29 H 1.48501 * 109.46858 * 240.00137 * 26 24 22 30 30 H 1.09003 * 109.46604 * 299.99916 * 1 2 3 31 31 H 1.08995 * 109.47134 * 59.99132 * 1 2 3 32 32 H 1.08998 * 109.46705 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.46642 * 240.01049 * 2 1 3 34 34 H 1.08994 * 109.47570 * 120.00556 * 2 1 3 35 35 H 1.09003 * 109.46803 * 65.01029 * 5 3 2 36 36 H 1.08993 * 109.47533 * 305.00748 * 5 3 2 37 37 H 0.97000 * 119.99792 * 0.02562 * 6 5 3 38 38 H 1.08995 * 109.47645 * 270.27789 * 12 11 10 39 39 H 1.09008 * 109.46832 * 30.27605 * 12 11 10 40 40 H 1.09001 * 109.47424 * 150.26889 * 12 11 10 41 41 H 1.08001 * 125.90341 * 180.02562 * 16 15 14 42 42 H 0.97009 * 120.00100 * 95.00124 * 21 3 2 43 43 H 0.97001 * 119.99534 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5648 1.4444 -0.1257 6 7 4.0631 2.8169 -0.0058 7 6 5.3857 3.0631 -0.0867 8 8 6.1653 2.1463 -0.2586 9 6 5.8879 4.4488 0.0281 10 7 5.1369 5.5500 0.2132 11 6 5.9520 6.5726 0.2641 12 6 5.5602 8.0143 0.4618 13 7 7.2060 6.1027 0.1023 14 6 8.3747 6.8754 0.0890 15 7 9.6155 6.4060 -0.0711 16 6 10.4713 7.3946 -0.0335 17 7 9.7862 8.5359 0.1550 18 1 10.1554 9.4301 0.2245 19 7 8.4299 8.1785 0.2261 20 7 7.1473 4.8232 -0.0382 21 7 1.6525 2.0974 1.2519 22 6 0.4157 2.6734 1.3690 23 1 -0.2742 2.6446 0.5385 24 6 0.0483 3.2935 2.5554 25 7 0.8890 3.3281 3.5676 26 14 -1.6391 4.0786 2.7153 27 1 -2.3883 3.9048 1.4450 28 1 -2.3845 3.4287 3.8231 29 1 -1.4856 5.5270 3.0048 30 1 -0.3632 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 3.8499 1.0379 -1.0961 36 1 3.9954 0.8311 0.6658 37 1 3.4410 3.5484 0.1317 38 1 5.3776 8.4775 -0.5078 39 1 4.6536 8.0649 1.0651 40 1 6.3656 8.5431 0.9714 41 1 11.5430 7.3089 -0.1361 42 1 2.2721 2.1230 1.9979 43 1 0.6323 3.7617 4.3965 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267815520.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:39 Heat of formation + Delta-G solvation = 148.713535 kcal Electronic energy + Delta-G solvation = -28120.289431 eV Core-core repulsion = 24046.755470 eV Total energy + Delta-G solvation = -4073.533961 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 334.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.02228 -43.39421 -40.71111 -38.27910 -36.14833 -35.32375 -34.55772 -34.11895 -33.51661 -31.98225 -31.45443 -29.74088 -29.30789 -26.73817 -25.31998 -24.93452 -23.84753 -23.05066 -21.81620 -21.65385 -21.20906 -19.81707 -19.42770 -18.89797 -18.46158 -17.91522 -17.12456 -16.97854 -16.61537 -16.08576 -16.02540 -15.62309 -15.59503 -15.23636 -14.82421 -14.53762 -14.21038 -14.10628 -14.03001 -13.78164 -13.52636 -12.96925 -12.89540 -12.80439 -12.75579 -12.63778 -12.33451 -12.04755 -11.86519 -11.84374 -11.62973 -11.53048 -11.50475 -11.43524 -11.27868 -11.16067 -10.86251 -10.49845 -10.11749 -8.93288 -7.82551 -5.09759 -0.50519 0.21545 0.43653 0.78336 1.52179 1.53396 1.61938 1.66319 1.68720 1.83464 2.07996 2.63577 2.68175 2.89413 3.16764 3.51060 3.60855 3.79718 3.91634 3.96860 4.32774 4.40682 4.50930 4.52744 4.55595 4.56382 4.60128 4.66701 4.73759 4.88640 4.90585 5.00690 5.11593 5.14124 5.24246 5.36698 5.43761 5.59666 5.65806 5.77767 5.99808 6.26753 6.37047 6.52051 6.80587 6.96770 7.44744 8.16208 8.40987 9.40817 Molecular weight = 334.16amu Principal moments of inertia in cm(-1) A = 0.014345 B = 0.002821 C = 0.002432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.419979 B = 9923.036523 C =11509.553266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.128 4.128 3 C 0.164 3.836 4 H 0.061 0.939 5 C 0.120 3.880 6 N -0.682 5.682 7 C 0.612 3.388 8 O -0.554 6.554 9 C 0.147 3.853 10 N -0.485 5.485 11 C 0.251 3.749 12 C -0.070 4.070 13 N -0.234 5.234 14 C 0.426 3.574 15 N -0.574 5.574 16 C 0.317 3.683 17 N -0.442 5.442 18 H 0.474 0.526 19 N -0.293 5.293 20 N -0.253 5.253 21 N -0.729 5.729 22 C -0.212 4.212 23 H 0.082 0.918 24 C -0.075 4.075 25 N -0.969 5.969 26 Si 0.960 3.040 27 H -0.265 1.265 28 H -0.302 1.302 29 H -0.299 1.299 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.078 0.922 34 H 0.047 0.953 35 H 0.092 0.908 36 H 0.061 0.939 37 H 0.417 0.583 38 H 0.117 0.883 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.297 0.703 42 H 0.371 0.629 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.217 14.256 -10.032 25.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.169 4.169 3 C 0.055 3.945 4 H 0.079 0.921 5 C -0.004 4.004 6 N -0.333 5.333 7 C 0.393 3.607 8 O -0.431 6.431 9 C -0.134 4.134 10 N -0.211 5.211 11 C -0.024 4.024 12 C -0.129 4.129 13 N -0.027 5.027 14 C 0.058 3.942 15 N -0.305 5.305 16 C 0.020 3.980 17 N -0.165 5.165 18 H 0.328 0.672 19 N -0.130 5.130 20 N -0.089 5.089 21 N -0.369 5.369 22 C -0.344 4.344 23 H 0.099 0.901 24 C -0.267 4.267 25 N -0.620 5.620 26 Si 0.791 3.209 27 H -0.189 1.189 28 H -0.230 1.230 29 H -0.227 1.227 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.097 0.903 34 H 0.066 0.934 35 H 0.110 0.890 36 H 0.079 0.921 37 H 0.255 0.745 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.128 0.872 41 H 0.312 0.688 42 H 0.203 0.797 43 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 19.173 13.229 -10.261 25.454 hybrid contribution -0.524 1.187 1.025 1.653 sum 18.649 14.416 -9.236 25.316 Atomic orbital electron populations 1.21699 0.95885 1.00628 1.01833 1.21974 0.96693 0.96879 1.01308 1.20748 0.90356 0.93723 0.89635 0.92102 1.21833 0.94896 0.81159 1.02497 1.45693 1.05603 1.11876 1.70109 1.16303 0.83154 0.83683 0.77559 1.90772 1.56802 1.44383 1.51115 1.23921 0.86630 0.96031 1.06804 1.71488 1.31179 0.97259 1.21188 1.26130 0.78625 1.00406 0.97236 1.20759 1.04805 0.81131 1.06158 1.43264 1.05369 1.03560 1.50530 1.19496 0.85006 0.86781 1.02964 1.70283 0.98100 1.35211 1.26934 1.27291 1.01744 0.78578 0.90431 1.47994 1.01614 1.12874 1.54040 0.67237 1.78129 0.98564 1.08471 1.27848 1.74545 1.21352 0.93464 1.19570 1.42602 1.15895 1.66123 1.12296 1.19537 0.92265 1.25153 0.97419 0.90051 1.25398 1.01052 1.03569 0.96709 1.69837 1.36794 1.51100 1.04310 0.85253 0.80842 0.77398 0.77406 1.18908 1.23024 1.22658 0.93270 0.93178 0.92755 0.90324 0.93402 0.89013 0.92074 0.74498 0.86477 0.87224 0.87223 0.68801 0.79680 0.94589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.90 9.18 71.98 0.66 -4.24 16 2 C -0.13 -4.25 5.61 30.60 0.17 -4.08 16 3 C 0.16 6.12 2.59 44.99 0.12 6.23 16 4 H 0.06 2.24 8.08 -2.39 -0.02 2.22 16 5 C 0.12 4.24 5.23 86.38 0.45 4.70 16 6 N -0.68 -26.46 5.39 -465.97 -2.51 -28.97 16 7 C 0.61 25.49 7.83 86.78 0.68 26.17 16 8 O -0.55 -25.30 17.09 -3.91 -0.07 -25.36 16 9 C 0.15 5.93 7.96 137.09 1.09 7.02 16 10 N -0.48 -17.91 11.09 -180.72 -2.00 -19.92 16 11 C 0.25 7.60 7.94 138.07 1.10 8.70 16 12 C -0.07 -1.33 9.84 71.24 0.70 -0.63 16 13 N -0.23 -7.58 3.52 -188.46 -0.66 -8.24 16 14 C 0.43 10.75 8.74 260.69 2.28 13.02 16 15 N -0.57 -12.62 11.20 -200.94 -2.25 -14.87 16 16 C 0.32 2.09 13.12 180.37 2.37 4.46 16 17 N -0.44 -2.34 7.44 -60.50 -0.45 -2.79 16 18 H 0.47 -2.17 8.96 -213.11 -1.91 -4.08 16 19 N -0.29 -4.92 10.41 -58.74 -0.61 -5.53 16 20 N -0.25 -9.93 12.03 -52.42 -0.63 -10.57 16 21 N -0.73 -34.54 4.51 -322.94 -1.46 -35.99 16 22 C -0.21 -10.99 7.75 84.03 0.65 -10.34 16 23 H 0.08 4.04 7.32 -2.91 -0.02 4.02 16 24 C -0.08 -4.21 5.50 84.86 0.47 -3.74 16 25 N -0.97 -58.78 13.06 21.65 0.28 -58.50 16 26 Si 0.96 45.63 29.55 68.60 2.03 47.66 16 27 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.96 16 29 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 30 H 0.05 2.04 5.99 -2.39 -0.01 2.03 16 31 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 33 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 36 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 37 H 0.42 17.01 7.85 -92.71 -0.73 16.28 16 38 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.11 2.02 8.14 -2.38 -0.02 2.00 16 40 H 0.11 1.77 6.33 -2.39 -0.02 1.75 16 41 H 0.30 -2.10 8.06 -2.91 -0.02 -2.12 16 42 H 0.37 19.75 7.80 -92.70 -0.72 19.03 16 43 H 0.25 14.65 8.31 -92.71 -0.77 13.88 16 Total: -1.00 -85.85 371.72 0.14 -85.71 By element: Atomic # 1 Polarization: 32.34 SS G_CDS: -2.26 Total: 30.08 kcal Atomic # 6 Polarization: 36.55 SS G_CDS: 10.73 Total: 47.28 kcal Atomic # 7 Polarization: -175.08 SS G_CDS: -10.29 Total: -185.37 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: -0.07 Total: -25.36 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -85.85 0.14 -85.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267815520.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 234.427 kcal (2) G-P(sol) polarization free energy of solvation -85.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 148.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds