Wall clock time and date at job start Tue Mar 31 2020 17:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32996 * 119.99747 * 2 1 4 4 C 1.47106 * 119.99770 * 179.97438 * 3 2 1 5 5 O 1.21621 * 119.99657 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.47777 * 134.41066 * 180.02562 * 6 4 3 8 8 C 1.52937 * 85.80852 * 156.05573 * 7 6 4 9 9 C 1.47768 * 134.40868 * 359.97417 * 6 4 3 10 10 C 1.54002 * 115.15435 * 266.50687 * 8 7 6 11 11 C 1.55478 * 100.78463 * 194.48739 * 10 8 7 12 12 C 1.54474 * 102.36907 * 33.10529 * 11 10 8 13 13 H 1.08992 * 109.90555 * 98.19631 * 12 11 10 14 14 C 1.50693 * 109.83255 * 219.13448 * 12 11 10 15 15 O 1.21284 * 120.00241 * 114.57583 * 14 12 11 16 16 N 1.34781 * 120.00201 * 294.57869 * 14 12 11 17 17 C 1.47579 * 134.49446 * 180.02562 * 16 14 12 18 18 C 1.53950 * 86.11621 * 204.65755 * 17 16 14 19 19 C 1.50698 * 113.74185 * 221.94108 * 18 17 16 20 20 H 1.08004 * 119.99782 * 358.07289 * 19 18 17 21 21 C 1.37878 * 120.00154 * 178.07233 * 19 18 17 22 22 N 1.31517 * 119.99673 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 90.00222 * 23 21 19 25 25 H 1.48497 * 109.47283 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47112 * 330.00381 * 23 21 19 27 27 C 1.47925 * 134.49765 * 0.02608 * 16 14 12 28 28 O 1.42537 * 116.18915 * 141.02815 * 8 7 6 29 29 H 1.09002 * 109.46682 * 299.99992 * 1 2 3 30 30 H 1.08995 * 109.47037 * 59.99342 * 1 2 3 31 31 H 1.08994 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99782 * 179.97438 * 2 1 3 33 33 H 1.07997 * 120.00472 * 359.97438 * 3 2 1 34 34 H 1.09000 * 113.81690 * 41.83250 * 7 6 4 35 35 H 1.09003 * 113.92407 * 270.29537 * 7 6 4 36 36 H 1.09002 * 113.82063 * 89.71778 * 9 6 4 37 37 H 1.09008 * 113.82015 * 318.15955 * 9 6 4 38 38 H 1.09002 * 111.15257 * 312.36925 * 10 8 7 39 39 H 1.09005 * 111.15441 * 76.60860 * 10 8 7 40 40 H 1.09004 * 110.82829 * 274.89009 * 11 10 8 41 41 H 1.09000 * 110.82817 * 151.32295 * 11 10 8 42 42 H 1.09003 * 113.77049 * 90.35821 * 17 16 14 43 43 H 1.08999 * 113.87175 * 318.96854 * 17 16 14 44 44 H 1.09002 * 113.74276 * 90.74001 * 18 17 16 45 45 H 0.96999 * 119.99516 * 179.97438 * 22 21 19 46 46 H 1.09006 * 113.87423 * 41.08470 * 27 16 14 47 47 H 1.08997 * 113.77410 * 269.58641 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6430 1.1518 0.0006 5 8 4.2510 0.0985 0.0006 6 7 4.3169 2.3190 0.0000 7 6 5.7482 2.6867 -0.0001 8 6 5.2930 4.0088 -0.6197 9 6 3.9198 3.7423 -0.0015 10 6 5.3194 4.0537 -2.1589 11 6 5.1860 5.5827 -2.4076 12 6 5.9355 6.1815 -1.1969 13 1 6.9520 6.4492 -1.4852 14 6 5.2073 7.4027 -0.6978 15 8 4.7011 7.3987 0.4044 16 7 5.1183 8.4994 -1.4761 17 6 4.5031 9.8317 -1.3196 18 6 4.4433 9.8693 -2.8574 19 6 4.8240 11.2028 -3.4471 20 1 5.0740 12.0288 -2.7976 21 6 4.8533 11.3685 -4.8155 22 7 4.5484 10.3628 -5.6063 23 14 5.3245 13.0217 -5.5464 24 1 6.7935 13.0684 -5.7588 25 1 4.6304 13.2042 -6.8464 26 1 4.9243 14.1069 -4.6150 27 6 5.5981 8.8513 -2.8304 28 8 5.9686 5.1802 -0.1692 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.6320 2.0871 -0.0004 34 1 6.3594 2.0763 -0.6649 35 1 6.1776 2.7922 0.9962 36 1 3.7960 4.1659 0.9951 37 1 3.0864 3.9661 -0.6676 38 1 6.2639 3.6729 -2.5474 39 1 4.4744 3.5110 -2.5828 40 1 4.1390 5.8861 -2.4039 41 1 5.6697 5.8670 -3.3421 42 1 5.1718 10.5764 -0.8876 43 1 3.5235 9.8119 -0.8422 44 1 3.5164 9.4711 -3.2704 45 1 4.5686 10.4795 -6.5690 46 1 5.4921 8.0472 -3.5588 47 1 6.5874 9.3087 -2.8411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268871197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:38 Heat of formation + Delta-G solvation = -23.707464 kcal Electronic energy + Delta-G solvation = -28706.504487 eV Core-core repulsion = 24664.448631 eV Total energy + Delta-G solvation = -4042.055856 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.29318 -39.69420 -38.82179 -37.26992 -36.32379 -34.69103 -32.81257 -32.34385 -30.62761 -29.31055 -28.06419 -26.68672 -26.41247 -25.19608 -24.79575 -22.46008 -21.64929 -20.43754 -19.88675 -18.86864 -18.34459 -17.62954 -17.31573 -16.72685 -16.35308 -16.15659 -16.09032 -15.36571 -14.82096 -14.56953 -14.41304 -14.09885 -13.83441 -13.73738 -13.54025 -13.37489 -13.30571 -13.04819 -12.76184 -12.61445 -12.27646 -12.06205 -12.00814 -11.78296 -11.67240 -11.61462 -11.35804 -11.28228 -11.04625 -10.99660 -10.80566 -10.48536 -10.28128 -9.99202 -9.70874 -9.53589 -9.32705 -8.93472 -8.86542 -8.63882 -7.92866 -6.25271 -4.30534 1.08303 2.47877 2.95831 3.07886 3.19067 3.25281 3.27632 3.31888 3.76996 4.03207 4.14956 4.27703 4.33952 4.38178 4.69888 4.74624 4.89083 4.92377 5.06019 5.07826 5.11352 5.17985 5.18925 5.23052 5.32011 5.36020 5.40518 5.46389 5.54920 5.58497 5.58835 5.80786 5.92265 5.99603 6.08594 6.12708 6.16557 6.21304 6.32342 6.47939 6.54262 6.69966 6.86252 7.42413 7.47507 7.72610 7.93991 8.09267 8.41669 8.68136 8.72887 9.36754 10.84363 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002282 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.215339 B =12266.173887 C =12700.014266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.064 4.064 3 C -0.218 4.218 4 C 0.574 3.426 5 O -0.549 6.549 6 N -0.636 5.636 7 C 0.121 3.879 8 C 0.070 3.930 9 C 0.094 3.906 10 C -0.125 4.125 11 C -0.140 4.140 12 C 0.070 3.930 13 H 0.106 0.894 14 C 0.514 3.486 15 O -0.550 6.550 16 N -0.638 5.638 17 C 0.105 3.895 18 C 0.035 3.965 19 C -0.520 4.520 20 H 0.063 0.937 21 C 0.068 3.932 22 N -0.887 5.887 23 Si 0.895 3.105 24 H -0.279 1.279 25 H -0.286 1.286 26 H -0.272 1.272 27 C 0.102 3.898 28 O -0.328 6.328 29 H 0.076 0.924 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.091 0.909 35 H 0.096 0.904 36 H 0.101 0.899 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.098 0.902 42 H 0.074 0.926 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.264 0.736 46 H 0.066 0.934 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.595 -15.866 5.787 17.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 C -0.239 4.239 4 C 0.367 3.633 5 O -0.429 6.429 6 N -0.373 5.373 7 C -0.001 4.001 8 C 0.029 3.971 9 C -0.029 4.029 10 C -0.163 4.163 11 C -0.178 4.178 12 C 0.009 3.991 13 H 0.124 0.876 14 C 0.302 3.698 15 O -0.429 6.429 16 N -0.374 5.374 17 C -0.017 4.017 18 C 0.016 3.984 19 C -0.558 4.558 20 H 0.081 0.919 21 C -0.135 4.135 22 N -0.524 5.524 23 Si 0.722 3.278 24 H -0.205 1.205 25 H -0.211 1.211 26 H -0.197 1.197 27 C -0.020 4.020 28 O -0.245 6.245 29 H 0.094 0.906 30 H 0.095 0.905 31 H 0.088 0.912 32 H 0.143 0.857 33 H 0.144 0.856 34 H 0.109 0.891 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.106 0.894 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.117 0.883 42 H 0.092 0.908 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.084 0.916 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -2.548 -16.802 6.500 18.195 hybrid contribution 0.299 1.040 -0.616 1.245 sum -2.249 -15.762 5.884 16.974 Atomic orbital electron populations 1.21023 0.91836 1.03317 1.03000 1.23756 0.96460 0.98392 0.89816 1.22496 0.92601 0.99834 1.08963 1.18181 0.87945 0.81512 0.75710 1.90786 1.70447 1.30225 1.51450 1.49584 1.08844 1.05554 1.73312 1.23142 0.83668 0.91308 1.02022 1.23457 0.92655 0.86519 0.94434 1.23664 0.98245 0.78339 1.02621 1.22902 1.04112 0.96632 0.92625 1.23129 1.02374 0.94101 0.98232 1.22667 1.00503 0.88197 0.87760 0.87595 1.20409 0.80875 0.84112 0.84443 1.90644 1.48598 1.83327 1.20322 1.50546 1.54984 1.12706 1.19165 1.23488 0.96520 0.80998 1.00700 1.20484 0.94731 0.94864 0.88349 1.20976 1.47186 0.96083 0.91528 0.91859 1.25011 0.94486 0.96829 0.97214 1.69936 1.47473 1.30900 1.04086 0.86543 0.78628 0.83961 0.78620 1.20519 1.21138 1.19706 1.23845 1.01021 0.97895 0.79251 1.88400 1.74753 1.22246 1.39054 0.90558 0.90495 0.91185 0.85657 0.85635 0.89058 0.88628 0.88135 0.89400 0.89203 0.89226 0.89635 0.88316 0.90774 0.92076 0.91842 0.92632 0.91597 0.90588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 10.19 36.01 0.37 -0.39 16 2 C -0.06 -0.54 9.84 -36.13 -0.36 -0.90 16 3 C -0.22 -2.15 9.46 -37.80 -0.36 -2.51 16 4 C 0.57 7.41 7.99 -12.66 -0.10 7.31 16 5 O -0.55 -8.85 16.95 5.26 0.09 -8.76 16 6 N -0.64 -7.49 3.60 -185.06 -0.67 -8.16 16 7 C 0.12 1.34 8.39 -3.38 -0.03 1.31 16 8 C 0.07 0.82 1.47 -90.31 -0.13 0.69 16 9 C 0.09 1.06 7.96 -3.38 -0.03 1.03 16 10 C -0.13 -1.26 6.39 -24.89 -0.16 -1.42 16 11 C -0.14 -1.68 5.83 -24.64 -0.14 -1.83 16 12 C 0.07 1.01 3.74 -27.11 -0.10 0.90 16 13 H 0.11 1.39 8.14 -51.93 -0.42 0.97 16 14 C 0.51 9.52 7.26 -10.99 -0.08 9.44 16 15 O -0.55 -12.00 17.25 -14.06 -0.24 -12.25 16 16 N -0.64 -12.07 3.60 -178.10 -0.64 -12.71 16 17 C 0.10 2.07 8.39 -2.97 -0.02 2.04 16 18 C 0.03 0.76 3.60 -90.83 -0.33 0.44 16 19 C -0.52 -12.60 8.77 -34.44 -0.30 -12.90 16 20 H 0.06 1.52 7.81 -52.48 -0.41 1.11 16 21 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 22 N -0.89 -22.90 13.29 55.43 0.74 -22.17 16 23 Si 0.89 19.37 29.54 -169.99 -5.02 14.35 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 H -0.29 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 27 C 0.10 1.95 7.98 -2.76 -0.02 1.93 16 28 O -0.33 -4.80 10.38 -54.85 -0.57 -5.37 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 1.16 7.49 -52.49 -0.39 0.76 16 33 H 0.13 1.04 7.89 -52.49 -0.41 0.62 16 34 H 0.09 0.93 8.11 -51.93 -0.42 0.50 16 35 H 0.10 1.03 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.09 0.88 8.11 -51.92 -0.42 0.46 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.09 0.84 8.05 -51.93 -0.42 0.42 16 40 H 0.08 1.12 7.84 -51.93 -0.41 0.71 16 41 H 0.10 1.09 7.53 -51.93 -0.39 0.70 16 42 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 43 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 44 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 45 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 46 H 0.07 1.20 7.02 -51.93 -0.36 0.84 16 47 H 0.08 1.46 8.09 -51.93 -0.42 1.04 16 LS Contribution 396.26 15.07 5.97 5.97 Total: -1.00 -30.84 396.26 -9.66 -40.49 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -7.42 Total: 1.85 kcal Atomic # 6 Polarization: 8.63 SS G_CDS: -1.89 Total: 6.73 kcal Atomic # 7 Polarization: -42.46 SS G_CDS: -0.57 Total: -43.04 kcal Atomic # 8 Polarization: -25.65 SS G_CDS: -0.72 Total: -26.37 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.02 Total: 14.35 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -30.84 -9.66 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.787 kcal (2) G-P(sol) polarization free energy of solvation -30.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds