Wall clock time and date at job start Tue Mar 31 2020 17:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32996 * 119.99747 * 2 1 4 4 C 1.47106 * 119.99770 * 179.97438 * 3 2 1 5 5 O 1.21621 * 119.99657 * 0.02562 * 4 3 2 6 6 N 1.34773 * 120.00209 * 179.97438 * 4 3 2 7 7 C 1.47777 * 134.41066 * 180.02562 * 6 4 3 8 8 C 1.52937 * 85.80852 * 156.05573 * 7 6 4 9 9 C 1.47768 * 134.40868 * 359.97417 * 6 4 3 10 10 C 1.54002 * 115.15435 * 266.50687 * 8 7 6 11 11 C 1.55478 * 100.78463 * 194.48739 * 10 8 7 12 12 C 1.54474 * 102.36907 * 33.10529 * 11 10 8 13 13 H 1.08992 * 109.90555 * 98.19631 * 12 11 10 14 14 C 1.50693 * 109.83255 * 219.13448 * 12 11 10 15 15 O 1.21284 * 120.00241 * 114.57583 * 14 12 11 16 16 N 1.34781 * 120.00201 * 294.57869 * 14 12 11 17 17 C 1.47579 * 134.49446 * 180.02562 * 16 14 12 18 18 C 1.53950 * 86.11621 * 204.65755 * 17 16 14 19 19 C 1.50698 * 113.74185 * 221.94108 * 18 17 16 20 20 H 1.08004 * 119.99782 * 358.07289 * 19 18 17 21 21 C 1.37878 * 120.00154 * 178.07233 * 19 18 17 22 22 N 1.31517 * 119.99673 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00171 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47199 * 90.00222 * 23 21 19 25 25 H 1.48497 * 109.47283 * 210.00257 * 23 21 19 26 26 H 1.48499 * 109.47112 * 330.00381 * 23 21 19 27 27 C 1.47925 * 134.49765 * 0.02608 * 16 14 12 28 28 O 1.42537 * 116.18915 * 141.02815 * 8 7 6 29 29 H 1.09002 * 109.46682 * 299.99992 * 1 2 3 30 30 H 1.08995 * 109.47037 * 59.99342 * 1 2 3 31 31 H 1.08994 * 109.47390 * 180.02562 * 1 2 3 32 32 H 1.07997 * 119.99782 * 179.97438 * 2 1 3 33 33 H 1.07997 * 120.00472 * 359.97438 * 3 2 1 34 34 H 1.09000 * 113.81690 * 41.83250 * 7 6 4 35 35 H 1.09003 * 113.92407 * 270.29537 * 7 6 4 36 36 H 1.09002 * 113.82063 * 89.71778 * 9 6 4 37 37 H 1.09008 * 113.82015 * 318.15955 * 9 6 4 38 38 H 1.09002 * 111.15257 * 312.36925 * 10 8 7 39 39 H 1.09005 * 111.15441 * 76.60860 * 10 8 7 40 40 H 1.09004 * 110.82829 * 274.89009 * 11 10 8 41 41 H 1.09000 * 110.82817 * 151.32295 * 11 10 8 42 42 H 1.09003 * 113.77049 * 90.35821 * 17 16 14 43 43 H 1.08999 * 113.87175 * 318.96854 * 17 16 14 44 44 H 1.09002 * 113.74276 * 90.74001 * 18 17 16 45 45 H 0.96999 * 119.99516 * 179.97438 * 22 21 19 46 46 H 1.09006 * 113.87423 * 41.08470 * 27 16 14 47 47 H 1.08997 * 113.77410 * 269.58641 * 27 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1719 1.1518 0.0000 4 6 3.6430 1.1518 0.0006 5 8 4.2510 0.0985 0.0006 6 7 4.3169 2.3190 0.0000 7 6 5.7482 2.6867 -0.0001 8 6 5.2930 4.0088 -0.6197 9 6 3.9198 3.7423 -0.0015 10 6 5.3194 4.0537 -2.1589 11 6 5.1860 5.5827 -2.4076 12 6 5.9355 6.1815 -1.1969 13 1 6.9520 6.4492 -1.4852 14 6 5.2073 7.4027 -0.6978 15 8 4.7011 7.3987 0.4044 16 7 5.1183 8.4994 -1.4761 17 6 4.5031 9.8317 -1.3196 18 6 4.4433 9.8693 -2.8574 19 6 4.8240 11.2028 -3.4471 20 1 5.0740 12.0288 -2.7976 21 6 4.8533 11.3685 -4.8155 22 7 4.5484 10.3628 -5.6063 23 14 5.3245 13.0217 -5.5464 24 1 6.7935 13.0684 -5.7588 25 1 4.6304 13.2042 -6.8464 26 1 4.9243 14.1069 -4.6150 27 6 5.5981 8.8513 -2.8304 28 8 5.9686 5.1802 -0.1692 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 2.0470 -0.9353 0.0004 33 1 1.6320 2.0871 -0.0004 34 1 6.3594 2.0763 -0.6649 35 1 6.1776 2.7922 0.9962 36 1 3.7960 4.1659 0.9951 37 1 3.0864 3.9661 -0.6676 38 1 6.2639 3.6729 -2.5474 39 1 4.4744 3.5110 -2.5828 40 1 4.1390 5.8861 -2.4039 41 1 5.6697 5.8670 -3.3421 42 1 5.1718 10.5764 -0.8876 43 1 3.5235 9.8119 -0.8422 44 1 3.5164 9.4711 -3.2704 45 1 4.5686 10.4795 -6.5690 46 1 5.4921 8.0472 -3.5588 47 1 6.5874 9.3087 -2.8411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268871197.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:37 Heat of formation + Delta-G solvation = -41.415544 kcal Electronic energy + Delta-G solvation = -28707.272367 eV Core-core repulsion = 24664.448631 eV Total energy + Delta-G solvation = -4042.823736 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.29337 -41.01835 -40.01811 -38.64512 -37.57468 -35.39315 -34.61417 -33.41922 -31.74135 -30.65162 -28.97968 -27.73585 -27.39373 -26.82684 -26.28600 -23.53223 -22.54237 -21.89467 -20.82707 -19.83385 -19.71149 -18.81767 -18.52186 -18.17237 -17.61133 -17.23579 -17.09774 -16.76695 -16.49459 -15.98613 -15.56676 -15.16104 -14.81787 -14.64977 -14.50275 -14.30600 -14.19084 -14.07269 -13.95205 -13.93080 -13.36085 -13.30137 -13.08974 -13.07617 -12.92656 -12.75338 -12.74002 -12.50919 -12.38708 -12.24854 -12.20241 -11.96062 -11.40716 -11.21859 -11.08376 -10.97262 -10.56306 -10.44457 -10.27246 -9.85721 -9.51724 -8.13775 -6.23329 0.30920 1.48429 1.50722 1.52190 1.59561 1.62447 1.88028 2.17466 2.48202 2.68451 3.12254 3.17899 3.28139 3.33885 3.48924 3.56079 3.90169 4.06782 4.14912 4.19626 4.26778 4.30172 4.33286 4.43406 4.45003 4.48927 4.52652 4.56190 4.60218 4.65135 4.67000 4.70447 4.78353 4.79107 4.84313 4.91461 5.00826 5.05367 5.08472 5.11908 5.42691 5.52731 5.64815 5.80423 5.85864 6.26723 6.49252 6.83502 6.89996 6.98289 7.17860 7.46261 8.95549 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.018989 B = 0.002282 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1474.215339 B =12266.173887 C =12700.014266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.048 4.048 3 C -0.238 4.238 4 C 0.567 3.433 5 O -0.591 6.591 6 N -0.635 5.635 7 C 0.119 3.881 8 C 0.066 3.934 9 C 0.095 3.905 10 C -0.113 4.113 11 C -0.135 4.135 12 C 0.074 3.926 13 H 0.125 0.875 14 C 0.510 3.490 15 O -0.587 6.587 16 N -0.637 5.637 17 C 0.106 3.894 18 C 0.025 3.975 19 C -0.530 4.530 20 H 0.062 0.938 21 C 0.025 3.975 22 N -0.913 5.913 23 Si 0.951 3.049 24 H -0.274 1.274 25 H -0.288 1.288 26 H -0.271 1.271 27 C 0.118 3.882 28 O -0.346 6.346 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.082 0.918 32 H 0.114 0.886 33 H 0.142 0.858 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.109 0.891 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.112 0.888 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.039 0.961 45 H 0.264 0.736 46 H 0.077 0.923 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.561 -16.310 5.109 17.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.068 4.068 3 C -0.259 4.259 4 C 0.362 3.638 5 O -0.474 6.474 6 N -0.370 5.370 7 C -0.003 4.003 8 C 0.025 3.975 9 C -0.027 4.027 10 C -0.151 4.151 11 C -0.173 4.173 12 C 0.013 3.987 13 H 0.142 0.858 14 C 0.300 3.700 15 O -0.469 6.469 16 N -0.372 5.372 17 C -0.016 4.016 18 C 0.006 3.994 19 C -0.569 4.569 20 H 0.080 0.920 21 C -0.175 4.175 22 N -0.552 5.552 23 Si 0.778 3.222 24 H -0.200 1.200 25 H -0.214 1.214 26 H -0.196 1.196 27 C -0.003 4.003 28 O -0.262 6.262 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.101 0.899 32 H 0.132 0.868 33 H 0.160 0.840 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.091 0.909 41 H 0.131 0.869 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.510 -17.227 5.824 18.357 hybrid contribution 0.227 1.162 -0.327 1.228 sum -2.283 -16.065 5.498 17.133 Atomic orbital electron populations 1.21087 0.89394 1.04561 1.03849 1.23997 0.98132 0.97445 0.87206 1.22516 0.90943 1.01112 1.11306 1.18714 0.89143 0.81064 0.74907 1.90756 1.71452 1.31497 1.53674 1.49617 1.09198 1.05549 1.72638 1.23216 0.83674 0.91118 1.02326 1.23628 0.92521 0.85704 0.95608 1.23666 0.98767 0.77864 1.02425 1.22909 1.05676 0.95274 0.91210 1.23108 1.01352 0.95247 0.97604 1.22703 1.00993 0.86601 0.88353 0.85754 1.21199 0.80236 0.84800 0.83770 1.90622 1.50273 1.83986 1.21971 1.50499 1.54849 1.12646 1.19165 1.23389 0.96895 0.82001 0.99280 1.20392 0.94750 0.94782 0.89522 1.21257 1.46760 0.97025 0.91808 0.92017 1.25641 0.94677 0.99549 0.97655 1.70018 1.48578 1.32364 1.04197 0.85655 0.78378 0.80586 0.77619 1.19996 1.21354 1.19552 1.23608 0.99910 0.97309 0.79503 1.88391 1.75047 1.23025 1.39778 0.89563 0.89457 0.89863 0.86798 0.84000 0.87969 0.88674 0.89164 0.88034 0.87265 0.88122 0.90915 0.86913 0.90184 0.92114 0.94274 0.92661 0.90446 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.17 10.19 71.24 0.73 -0.44 16 2 C -0.05 -0.75 9.84 24.52 0.24 -0.51 16 3 C -0.24 -4.47 9.46 23.43 0.22 -4.25 16 4 C 0.57 14.46 7.99 86.57 0.69 15.15 16 5 O -0.59 -19.18 16.95 -4.10 -0.07 -19.25 16 6 N -0.63 -14.48 3.60 -863.78 -3.11 -17.59 16 7 C 0.12 2.51 8.39 86.11 0.72 3.23 16 8 C 0.07 1.45 1.47 -10.44 -0.02 1.43 16 9 C 0.10 2.06 7.96 86.11 0.69 2.75 16 10 C -0.11 -2.01 6.39 31.79 0.20 -1.80 16 11 C -0.14 -2.96 5.83 31.95 0.19 -2.77 16 12 C 0.07 2.03 3.74 30.35 0.11 2.14 16 13 H 0.13 2.97 8.14 -2.39 -0.02 2.95 16 14 C 0.51 18.54 7.26 87.65 0.64 19.18 16 15 O -0.59 -25.63 17.25 15.71 0.27 -25.36 16 16 N -0.64 -23.62 3.60 -835.78 -3.01 -26.63 16 17 C 0.11 4.19 8.39 86.49 0.73 4.91 16 18 C 0.02 1.08 3.60 -10.87 -0.04 1.04 16 19 C -0.53 -25.53 8.77 25.60 0.22 -25.31 16 20 H 0.06 2.93 7.81 -2.91 -0.02 2.90 16 21 C 0.03 1.24 5.46 84.65 0.46 1.71 16 22 N -0.91 -46.84 13.29 21.45 0.28 -46.56 16 23 Si 0.95 39.22 29.54 68.60 2.03 41.25 16 24 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 25 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 27 C 0.12 4.42 7.98 86.43 0.69 5.11 16 28 O -0.35 -9.71 10.38 -130.22 -1.35 -11.06 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.11 2.06 7.49 -2.91 -0.02 2.03 16 33 H 0.14 2.12 7.89 -2.91 -0.02 2.10 16 34 H 0.10 1.93 8.11 -2.39 -0.02 1.91 16 35 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 36 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 37 H 0.10 1.90 8.11 -2.38 -0.02 1.88 16 38 H 0.11 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.10 1.61 8.05 -2.38 -0.02 1.59 16 40 H 0.07 1.80 7.84 -2.39 -0.02 1.78 16 41 H 0.11 2.18 7.53 -2.39 -0.02 2.16 16 42 H 0.08 3.04 8.09 -2.39 -0.02 3.02 16 43 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 44 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 45 H 0.26 12.98 8.31 -92.71 -0.77 12.21 16 46 H 0.08 2.71 7.02 -2.38 -0.02 2.69 16 47 H 0.08 2.93 8.09 -2.39 -0.02 2.91 16 Total: -1.00 -66.11 396.26 2.47 -63.63 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.96 Total: 20.01 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 6.47 Total: 21.56 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -5.83 Total: -90.78 kcal Atomic # 8 Polarization: -54.52 SS G_CDS: -1.15 Total: -55.67 kcal Atomic # 14 Polarization: 39.22 SS G_CDS: 2.03 Total: 41.25 kcal Total: -66.11 2.47 -63.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268871197.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.215 kcal (2) G-P(sol) polarization free energy of solvation -66.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds