Wall clock time and date at job start Tue Mar 31 2020 17:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47152 * 2 1 4 4 C 1.50699 * 109.46908 * 180.02562 * 3 2 1 5 5 O 1.20783 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.49096 * 120.00087 * 180.02562 * 4 3 2 7 7 O 1.21368 * 119.99613 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99972 * 180.02562 * 6 4 3 9 9 C 1.47252 * 127.38493 * 359.10910 * 8 6 4 10 10 C 1.54387 * 105.05409 * 219.08016 * 9 8 6 11 11 H 1.09002 * 117.61784 * 116.52152 * 10 9 8 12 12 C 1.52999 * 118.89795 * 274.09340 * 10 9 8 13 13 C 1.53006 * 60.55597 * 91.09642 * 12 10 9 14 14 C 1.50697 * 119.53843 * 111.76568 * 13 12 10 15 15 O 1.21282 * 120.00119 * 289.29491 * 14 13 12 16 16 N 1.34780 * 120.00102 * 109.29658 * 14 13 12 17 17 C 1.47066 * 136.05563 * 359.62639 * 16 14 13 18 18 C 1.53242 * 88.08238 * 207.20703 * 17 16 14 19 19 C 1.50700 * 114.50435 * 220.45980 * 18 17 16 20 20 H 1.07998 * 119.99964 * 93.84397 * 19 18 17 21 21 C 1.37875 * 119.99990 * 273.84266 * 19 18 17 22 22 N 1.31517 * 120.00333 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99971 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47400 * 89.99541 * 23 21 19 25 25 H 1.48501 * 109.47204 * 210.00336 * 23 21 19 26 26 H 1.48505 * 109.46859 * 330.00104 * 23 21 19 27 27 C 1.47068 * 136.05655 * 180.02562 * 16 14 13 28 28 C 1.48151 * 127.83425 * 179.97438 * 8 6 4 29 29 H 1.08999 * 109.46978 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46831 * 300.00073 * 1 2 3 32 32 H 1.09004 * 109.47303 * 239.99966 * 2 1 3 33 33 H 1.08999 * 109.46978 * 120.00225 * 2 1 3 34 34 H 1.09000 * 109.47312 * 60.00221 * 3 2 1 35 35 H 1.08999 * 109.47363 * 299.99990 * 3 2 1 36 36 H 1.09000 * 109.08864 * 100.70936 * 9 8 6 37 37 H 1.09004 * 111.29485 * 338.57863 * 9 8 6 38 38 H 1.09003 * 117.44229 * 198.74180 * 12 10 9 39 39 H 1.09000 * 117.44636 * 343.44775 * 12 10 9 40 40 H 1.08998 * 113.46652 * 321.93617 * 17 16 14 41 41 H 1.08997 * 113.46632 * 92.37896 * 17 16 14 42 42 H 1.08995 * 114.01684 * 87.71574 * 18 17 16 43 43 H 0.97001 * 119.99486 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.46262 * 267.61803 * 27 16 14 45 45 H 1.09000 * 113.46860 * 38.00156 * 27 16 14 46 46 H 1.08998 * 110.40554 * 21.63884 * 28 8 6 47 47 H 1.08993 * 110.51082 * 259.25103 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1509 0.3964 -0.0006 6 6 4.2925 2.7336 -0.0002 7 8 3.6857 3.7846 0.0002 8 7 5.6402 2.7335 -0.0013 9 6 6.5342 1.5635 0.0152 10 6 7.6981 1.9613 0.9484 11 1 7.8303 1.3860 1.8647 12 6 8.8831 2.7331 0.3646 13 6 7.6980 3.5042 0.9496 14 6 7.8809 4.2977 2.2176 15 8 8.0336 3.7241 3.2752 16 7 7.8748 5.6448 2.1763 17 6 7.7309 6.6717 1.1334 18 6 8.5591 7.6112 2.0164 19 6 8.0682 9.0357 2.0458 20 1 7.3925 9.3581 2.8241 21 6 8.4818 9.9274 1.0790 22 7 8.0531 11.1705 1.1042 23 14 9.6501 9.3696 -0.2677 24 1 8.8675 8.8623 -1.4233 25 1 10.4881 10.5160 -0.7023 26 1 10.5236 8.2869 0.2520 27 6 8.0162 6.7348 3.1535 28 6 6.5490 3.9035 -0.0016 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.9019 1.3816 -0.9946 37 1 6.0236 0.6805 0.3996 38 1 9.8125 2.7328 0.9342 39 1 8.9972 2.7340 -0.7194 40 1 8.2244 6.4114 0.1970 41 1 6.7028 7.0041 0.9905 42 1 9.6352 7.5293 1.8642 43 1 8.3445 11.7979 0.4242 44 1 7.0648 7.0843 3.5545 45 1 8.7509 6.5277 3.9316 46 1 6.0325 4.7860 0.3759 47 1 6.9328 4.0887 -1.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268913723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:08 Heat of formation + Delta-G solvation = -22.317626 kcal Electronic energy + Delta-G solvation = -29057.053565 eV Core-core repulsion = 25015.057977 eV Total energy + Delta-G solvation = -4041.995588 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.36983 -40.24999 -39.09510 -38.33209 -37.01441 -34.97518 -33.80286 -32.68958 -30.19066 -29.24448 -28.69438 -27.11545 -25.71451 -25.18414 -24.10722 -22.61872 -21.43781 -21.22319 -19.73445 -19.63621 -18.35683 -17.37037 -17.20681 -16.86967 -16.63625 -16.54879 -15.83988 -15.58632 -15.26937 -15.02127 -14.52706 -14.24548 -14.05111 -13.79811 -13.55419 -13.50604 -13.35398 -12.91446 -12.76849 -12.60740 -12.46106 -12.30378 -12.08413 -11.91707 -11.80079 -11.72283 -11.62878 -11.58118 -11.16377 -10.98276 -10.79527 -10.73700 -10.27686 -10.04104 -9.84990 -9.63074 -9.44178 -9.23638 -9.06185 -8.70919 -8.13672 -6.23180 -4.26549 0.65912 2.21934 2.65373 2.70139 3.17111 3.19494 3.27149 3.27936 3.38495 3.66549 4.16689 4.27525 4.28602 4.33603 4.52475 4.57862 4.58638 4.64418 4.86396 4.98834 5.00054 5.11843 5.12778 5.28794 5.31658 5.39405 5.40353 5.43487 5.57001 5.63284 5.67263 5.67848 5.70937 5.71723 5.87568 5.89903 5.90452 6.06390 6.18590 6.26555 6.34113 6.48542 6.59378 7.07667 7.12810 7.51120 7.58859 8.22657 8.33767 8.51748 8.80219 9.36891 10.88728 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.002894 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.880171 B = 9671.302140 C =10464.257085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.153 4.153 4 C 0.360 3.640 5 O -0.418 6.418 6 C 0.490 3.510 7 O -0.504 6.504 8 N -0.597 5.597 9 C 0.115 3.885 10 C -0.143 4.143 11 H 0.132 0.868 12 C -0.104 4.104 13 C -0.182 4.182 14 C 0.579 3.421 15 O -0.556 6.556 16 N -0.637 5.637 17 C 0.084 3.916 18 C -0.011 4.011 19 C -0.511 4.511 20 H 0.081 0.919 21 C 0.078 3.922 22 N -0.891 5.891 23 Si 0.873 3.127 24 H -0.273 1.273 25 H -0.286 1.286 26 H -0.262 1.262 27 C 0.115 3.885 28 C 0.139 3.861 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.080 0.920 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.267 0.733 44 H 0.081 0.919 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.243 -22.033 -6.679 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.191 4.191 4 C 0.231 3.769 5 O -0.288 6.288 6 C 0.276 3.724 7 O -0.379 6.379 8 N -0.332 5.332 9 C -0.007 4.007 10 C -0.163 4.163 11 H 0.150 0.850 12 C -0.142 4.142 13 C -0.186 4.186 14 C 0.368 3.632 15 O -0.436 6.436 16 N -0.370 5.370 17 C -0.039 4.039 18 C -0.030 4.030 19 C -0.549 4.549 20 H 0.099 0.901 21 C -0.126 4.126 22 N -0.527 5.527 23 Si 0.700 3.300 24 H -0.199 1.199 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.006 4.006 28 C 0.018 3.982 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.128 0.872 35 H 0.128 0.872 36 H 0.098 0.902 37 H 0.133 0.867 38 H 0.131 0.869 39 H 0.124 0.876 40 H 0.074 0.926 41 H 0.105 0.895 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.099 0.901 45 H 0.081 0.919 46 H 0.117 0.883 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.321 -22.359 -6.217 24.335 hybrid contribution 0.613 0.069 -0.764 0.982 sum -6.708 -22.291 -6.981 24.302 Atomic orbital electron populations 1.21773 0.94932 1.02087 1.02232 1.21401 0.96210 0.94515 1.03365 1.21973 0.90698 1.00170 1.06238 1.24873 0.93093 0.87665 0.71310 1.90336 1.71142 1.34632 1.32708 1.20709 0.81225 0.91592 0.78890 1.90815 1.66896 1.32675 1.47525 1.49104 1.04544 1.09354 1.70193 1.22211 0.89270 0.89697 0.99562 1.23859 0.98046 0.91960 1.02429 0.84994 1.23102 0.92231 0.97492 1.01340 1.22650 1.01643 0.95373 0.98914 1.18452 0.76604 0.80362 0.87831 1.90660 1.52197 1.69527 1.31206 1.49811 1.69266 1.02711 1.15169 1.23868 1.02185 0.85374 0.92469 1.20852 0.96300 0.94487 0.91397 1.20748 1.29457 0.91063 1.13608 0.90142 1.25007 0.95544 0.94563 0.97503 1.69891 1.44116 1.03842 1.34895 0.86885 0.81757 0.78821 0.82511 1.19897 1.21169 1.18683 1.23154 1.00673 0.82665 0.94148 1.21833 0.88025 0.89638 0.98724 0.92421 0.92286 0.92371 0.91236 0.91196 0.87162 0.87173 0.90230 0.86696 0.86934 0.87553 0.92550 0.89489 0.91515 0.92314 0.90061 0.91904 0.88341 0.89226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.79 5.22 -26.73 -0.14 -0.93 16 3 C -0.15 -1.18 5.28 -27.89 -0.15 -1.33 16 4 C 0.36 3.71 7.18 -29.80 -0.21 3.50 16 5 O -0.42 -4.53 13.36 5.98 0.08 -4.45 16 6 C 0.49 6.50 7.95 -11.76 -0.09 6.40 16 7 O -0.50 -8.12 16.93 5.48 0.09 -8.02 16 8 N -0.60 -7.66 3.30 -170.67 -0.56 -8.22 16 9 C 0.11 1.19 6.33 -2.90 -0.02 1.17 16 10 C -0.14 -1.66 6.76 -89.22 -0.60 -2.26 16 11 H 0.13 1.59 8.14 -51.93 -0.42 1.17 16 12 C -0.10 -1.11 9.89 -26.73 -0.26 -1.38 16 13 C -0.18 -2.58 2.70 -154.24 -0.42 -3.00 16 14 C 0.58 10.79 7.68 -10.99 -0.08 10.70 16 15 O -0.56 -11.97 17.59 5.56 0.10 -11.88 16 16 N -0.64 -12.22 3.64 -185.38 -0.67 -12.89 16 17 C 0.08 1.60 6.13 -8.63 -0.05 1.55 16 18 C -0.01 -0.23 2.97 -91.40 -0.27 -0.50 16 19 C -0.51 -13.11 9.39 -34.44 -0.32 -13.43 16 20 H 0.08 2.25 8.06 -52.49 -0.42 1.83 16 21 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 23 Si 0.87 19.65 27.42 -169.99 -4.66 14.99 16 24 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 25 H -0.29 -6.52 7.11 56.52 0.40 -6.11 16 26 H -0.26 -5.61 6.22 56.52 0.35 -5.26 16 27 C 0.12 2.30 8.18 -8.51 -0.07 2.23 16 28 C 0.14 1.90 6.16 -2.39 -0.01 1.88 16 29 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.11 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.11 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.12 1.18 5.51 -51.93 -0.29 0.89 16 38 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.11 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 42 H 0.07 1.45 6.50 -51.93 -0.34 1.12 16 43 H 0.27 7.17 8.31 -40.82 -0.34 6.84 16 44 H 0.08 1.62 8.10 -51.93 -0.42 1.20 16 45 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 46 H 0.10 1.57 6.80 -51.93 -0.35 1.22 16 47 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 389.12 15.07 5.86 5.86 Total: -1.00 -31.98 389.12 -8.77 -40.75 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.34 Total: 2.52 kcal Atomic # 6 Polarization: 8.53 SS G_CDS: -2.44 Total: 6.09 kcal Atomic # 7 Polarization: -45.41 SS G_CDS: -0.46 Total: -45.87 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.27 Total: -24.35 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.66 Total: 14.99 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.98 -8.77 -40.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268913723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.436 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds