Wall clock time and date at job start Tue Mar 31 2020 17:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47152 * 2 1 4 4 C 1.50699 * 109.46908 * 180.02562 * 3 2 1 5 5 O 1.20783 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.49096 * 120.00087 * 180.02562 * 4 3 2 7 7 O 1.21368 * 119.99613 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99972 * 180.02562 * 6 4 3 9 9 C 1.47252 * 127.38493 * 359.10910 * 8 6 4 10 10 C 1.54387 * 105.05409 * 219.08016 * 9 8 6 11 11 H 1.09002 * 117.61784 * 116.52152 * 10 9 8 12 12 C 1.52999 * 118.89795 * 274.09340 * 10 9 8 13 13 C 1.53006 * 60.55597 * 91.09642 * 12 10 9 14 14 C 1.50697 * 119.53843 * 111.76568 * 13 12 10 15 15 O 1.21282 * 120.00119 * 289.29491 * 14 13 12 16 16 N 1.34780 * 120.00102 * 109.29658 * 14 13 12 17 17 C 1.47066 * 136.05563 * 359.62639 * 16 14 13 18 18 C 1.53242 * 88.08238 * 207.20703 * 17 16 14 19 19 C 1.50700 * 114.50435 * 220.45980 * 18 17 16 20 20 H 1.07998 * 119.99964 * 93.84397 * 19 18 17 21 21 C 1.37875 * 119.99990 * 273.84266 * 19 18 17 22 22 N 1.31517 * 120.00333 * 179.97438 * 21 19 18 23 23 Si 1.86806 * 119.99971 * 0.02562 * 21 19 18 24 24 H 1.48496 * 109.47400 * 89.99541 * 23 21 19 25 25 H 1.48501 * 109.47204 * 210.00336 * 23 21 19 26 26 H 1.48505 * 109.46859 * 330.00104 * 23 21 19 27 27 C 1.47068 * 136.05655 * 180.02562 * 16 14 13 28 28 C 1.48151 * 127.83425 * 179.97438 * 8 6 4 29 29 H 1.08999 * 109.46978 * 59.99774 * 1 2 3 30 30 H 1.09005 * 109.47015 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46831 * 300.00073 * 1 2 3 32 32 H 1.09004 * 109.47303 * 239.99966 * 2 1 3 33 33 H 1.08999 * 109.46978 * 120.00225 * 2 1 3 34 34 H 1.09000 * 109.47312 * 60.00221 * 3 2 1 35 35 H 1.08999 * 109.47363 * 299.99990 * 3 2 1 36 36 H 1.09000 * 109.08864 * 100.70936 * 9 8 6 37 37 H 1.09004 * 111.29485 * 338.57863 * 9 8 6 38 38 H 1.09003 * 117.44229 * 198.74180 * 12 10 9 39 39 H 1.09000 * 117.44636 * 343.44775 * 12 10 9 40 40 H 1.08998 * 113.46652 * 321.93617 * 17 16 14 41 41 H 1.08997 * 113.46632 * 92.37896 * 17 16 14 42 42 H 1.08995 * 114.01684 * 87.71574 * 18 17 16 43 43 H 0.97001 * 119.99486 * 179.97438 * 22 21 19 44 44 H 1.08997 * 113.46262 * 267.61803 * 27 16 14 45 45 H 1.09000 * 113.46860 * 38.00156 * 27 16 14 46 46 H 1.08998 * 110.40554 * 21.63884 * 28 8 6 47 47 H 1.08993 * 110.51082 * 259.25103 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 -0.0006 5 8 4.1509 0.3964 -0.0006 6 6 4.2925 2.7336 -0.0002 7 8 3.6857 3.7846 0.0002 8 7 5.6402 2.7335 -0.0013 9 6 6.5342 1.5635 0.0152 10 6 7.6981 1.9613 0.9484 11 1 7.8303 1.3860 1.8647 12 6 8.8831 2.7331 0.3646 13 6 7.6980 3.5042 0.9496 14 6 7.8809 4.2977 2.2176 15 8 8.0336 3.7241 3.2752 16 7 7.8748 5.6448 2.1763 17 6 7.7309 6.6717 1.1334 18 6 8.5591 7.6112 2.0164 19 6 8.0682 9.0357 2.0458 20 1 7.3925 9.3581 2.8241 21 6 8.4818 9.9274 1.0790 22 7 8.0531 11.1705 1.1042 23 14 9.6501 9.3696 -0.2677 24 1 8.8675 8.8623 -1.4233 25 1 10.4881 10.5160 -0.7023 26 1 10.5236 8.2869 0.2520 27 6 8.0162 6.7348 3.1535 28 6 6.5490 3.9035 -0.0016 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 1.9563 -0.8900 36 1 6.9019 1.3816 -0.9946 37 1 6.0236 0.6805 0.3996 38 1 9.8125 2.7328 0.9342 39 1 8.9972 2.7340 -0.7194 40 1 8.2244 6.4114 0.1970 41 1 6.7028 7.0041 0.9905 42 1 9.6352 7.5293 1.8642 43 1 8.3445 11.7979 0.4242 44 1 7.0648 7.0843 3.5545 45 1 8.7509 6.5277 3.9316 46 1 6.0325 4.7860 0.3759 47 1 6.9328 4.0887 -1.0047 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268913723.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:07 Heat of formation + Delta-G solvation = -42.423911 kcal Electronic energy + Delta-G solvation = -29057.925439 eV Core-core repulsion = 25015.057977 eV Total energy + Delta-G solvation = -4042.867462 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.37403 -41.40392 -40.34468 -39.43001 -38.49608 -35.59130 -34.75457 -34.68725 -31.73598 -30.05802 -29.72651 -27.98699 -27.40021 -26.82806 -24.94064 -23.84789 -22.36529 -21.96228 -21.28242 -20.54151 -19.69994 -19.13367 -18.43720 -17.91842 -17.74292 -17.47397 -17.04768 -16.79195 -16.36309 -16.15872 -15.89359 -15.29056 -15.17945 -15.03652 -14.93047 -14.59584 -14.44810 -14.06502 -13.97223 -13.73315 -13.57626 -13.43091 -13.10639 -13.01440 -12.88911 -12.73907 -12.72391 -12.59292 -12.49253 -12.08963 -11.86128 -11.76778 -11.66641 -11.53266 -11.28196 -11.20999 -10.89087 -10.68267 -10.48351 -10.06586 -9.73397 -8.27527 -6.36608 -0.21408 1.26193 1.38884 1.42254 1.45133 1.54217 1.75131 1.82464 2.30929 2.38933 2.78665 3.01769 3.21337 3.34015 3.34874 3.57607 3.71951 3.91088 3.94419 3.97283 4.04759 4.23129 4.25294 4.34095 4.43035 4.48162 4.49410 4.55750 4.62434 4.62818 4.67925 4.71268 4.72179 4.73602 4.75088 4.83351 4.87807 4.92564 5.06006 5.19194 5.23114 5.35375 5.42181 5.58346 5.76220 6.13952 6.27064 6.61327 6.68865 6.75604 7.00851 7.30896 8.87990 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014797 B = 0.002894 C = 0.002675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.880171 B = 9671.302140 C =10464.257085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C -0.149 4.149 4 C 0.368 3.632 5 O -0.422 6.422 6 C 0.482 3.518 7 O -0.543 6.543 8 N -0.601 5.601 9 C 0.119 3.881 10 C -0.133 4.133 11 H 0.123 0.877 12 C -0.073 4.073 13 C -0.210 4.210 14 C 0.574 3.426 15 O -0.592 6.592 16 N -0.638 5.638 17 C 0.100 3.900 18 C -0.013 4.013 19 C -0.514 4.514 20 H 0.038 0.962 21 C 0.019 3.981 22 N -0.944 5.944 23 Si 0.940 3.060 24 H -0.255 1.255 25 H -0.291 1.291 26 H -0.239 1.239 27 C 0.113 3.887 28 C 0.141 3.859 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.113 0.887 35 H 0.122 0.878 36 H 0.111 0.889 37 H 0.116 0.884 38 H 0.113 0.887 39 H 0.144 0.856 40 H 0.085 0.915 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.268 0.732 44 H 0.072 0.928 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.186 -25.068 -9.346 27.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.151 4.151 3 C -0.187 4.187 4 C 0.239 3.761 5 O -0.292 6.292 6 C 0.268 3.732 7 O -0.420 6.420 8 N -0.335 5.335 9 C -0.002 4.002 10 C -0.153 4.153 11 H 0.141 0.859 12 C -0.110 4.110 13 C -0.214 4.214 14 C 0.365 3.635 15 O -0.475 6.475 16 N -0.370 5.370 17 C -0.023 4.023 18 C -0.033 4.033 19 C -0.552 4.552 20 H 0.056 0.944 21 C -0.180 4.180 22 N -0.583 5.583 23 Si 0.763 3.237 24 H -0.180 1.180 25 H -0.217 1.217 26 H -0.162 1.162 27 C -0.010 4.010 28 C 0.019 3.981 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.089 0.911 33 H 0.082 0.918 34 H 0.131 0.869 35 H 0.140 0.860 36 H 0.129 0.871 37 H 0.134 0.866 38 H 0.132 0.868 39 H 0.161 0.839 40 H 0.103 0.897 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.077 0.923 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.257 -25.446 -8.880 27.668 hybrid contribution 0.243 1.013 0.235 1.068 sum -6.014 -24.433 -8.645 26.606 Atomic orbital electron populations 1.21769 0.93910 1.02652 1.02567 1.21382 0.97029 0.93549 1.03102 1.22040 0.88642 1.01134 1.06878 1.24900 0.93853 0.86299 0.70999 1.90333 1.71420 1.34270 1.33191 1.21365 0.81443 0.92270 0.78106 1.90792 1.67673 1.34150 1.49419 1.49300 1.04740 1.10054 1.69414 1.22372 0.88280 0.88608 1.00981 1.23970 0.99124 0.89617 1.02563 0.85926 1.23319 0.90887 0.93481 1.03362 1.22553 1.04645 0.96433 0.97795 1.19249 0.75160 0.79928 0.89134 1.90635 1.53713 1.69976 1.33137 1.49799 1.69555 1.03138 1.14509 1.23562 1.01362 0.84310 0.93063 1.20738 0.96805 0.92426 0.93325 1.20894 1.28481 0.93490 1.12356 0.94394 1.25918 0.97452 0.94331 1.00265 1.70051 1.46324 1.05517 1.36396 0.85825 0.79623 0.78809 0.79488 1.17980 1.21717 1.16192 1.23030 1.00325 0.83303 0.94314 1.21826 0.87623 0.88891 0.99757 0.91849 0.91626 0.92310 0.91148 0.91802 0.86893 0.86008 0.87063 0.86615 0.86837 0.83853 0.89658 0.90423 0.90742 0.92285 0.91006 0.91453 0.91432 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 9.91 71.98 0.71 -0.69 16 2 C -0.11 -1.34 5.22 30.59 0.16 -1.18 16 3 C -0.15 -2.11 5.28 29.85 0.16 -1.95 16 4 C 0.37 7.08 7.18 28.61 0.21 7.28 16 5 O -0.42 -8.31 13.36 -1.52 -0.02 -8.33 16 6 C 0.48 12.30 7.95 87.16 0.69 12.99 16 7 O -0.54 -17.51 16.93 -3.30 -0.06 -17.56 16 8 N -0.60 -14.20 3.30 -812.23 -2.68 -16.88 16 9 C 0.12 2.06 6.33 86.71 0.55 2.61 16 10 C -0.13 -2.67 6.76 -9.89 -0.07 -2.74 16 11 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 12 C -0.07 -1.24 9.89 30.60 0.30 -0.94 16 13 C -0.21 -5.45 2.70 -52.01 -0.14 -5.59 16 14 C 0.57 20.86 7.68 87.66 0.67 21.53 16 15 O -0.59 -25.43 17.59 -3.03 -0.05 -25.48 16 16 N -0.64 -24.06 3.64 -858.81 -3.12 -27.18 16 17 C 0.10 3.68 6.13 83.10 0.51 4.19 16 18 C -0.01 -0.57 2.97 -11.30 -0.03 -0.61 16 19 C -0.51 -27.16 9.39 25.60 0.24 -26.92 16 20 H 0.04 2.26 8.06 -2.91 -0.02 2.23 16 21 C 0.02 1.02 5.47 84.65 0.46 1.48 16 22 N -0.94 -55.82 13.96 21.45 0.30 -55.52 16 23 Si 0.94 39.50 27.42 68.60 1.88 41.38 16 24 H -0.26 -9.98 7.11 99.48 0.71 -9.28 16 25 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.24 -9.05 6.22 99.48 0.62 -8.43 16 27 C 0.11 4.57 8.18 83.18 0.68 5.25 16 28 C 0.14 3.52 6.16 86.54 0.53 4.05 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.07 0.83 8.10 -2.38 -0.02 0.81 16 33 H 0.06 0.84 8.10 -2.39 -0.02 0.82 16 34 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 2.04 5.51 -2.38 -0.01 2.03 16 38 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.14 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 41 H 0.08 3.02 8.10 -2.39 -0.02 3.00 16 42 H 0.07 3.09 6.50 -2.39 -0.02 3.08 16 43 H 0.27 14.82 8.31 -92.71 -0.77 14.05 16 44 H 0.07 3.01 8.10 -2.39 -0.02 2.99 16 45 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 46 H 0.07 2.11 6.80 -2.39 -0.02 2.10 16 47 H 0.12 2.25 8.14 -2.39 -0.02 2.23 16 Total: -1.00 -72.52 389.12 2.77 -69.75 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.88 Total: 21.05 kcal Atomic # 6 Polarization: 13.14 SS G_CDS: 5.64 Total: 18.78 kcal Atomic # 7 Polarization: -94.08 SS G_CDS: -5.50 Total: -99.58 kcal Atomic # 8 Polarization: -51.25 SS G_CDS: -0.13 Total: -51.38 kcal Atomic # 14 Polarization: 39.50 SS G_CDS: 1.88 Total: 41.38 kcal Total: -72.52 2.77 -69.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268913723.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.327 kcal (2) G-P(sol) polarization free energy of solvation -72.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.751 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds