Wall clock time and date at job start Tue Mar 31 2020 17:28:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46814 * 2 1 4 4 C 1.50700 * 109.46936 * 179.97438 * 3 2 1 5 5 O 1.20781 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.49089 * 120.00158 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99772 * 359.97438 * 6 4 3 8 8 N 1.34782 * 120.00430 * 179.97438 * 6 4 3 9 9 C 1.48117 * 127.03800 * 5.23662 * 8 6 4 10 10 C 1.54949 * 103.25412 * 140.77413 * 9 8 6 11 11 C 1.54572 * 102.85903 * 37.43081 * 10 9 8 12 12 H 1.08997 * 117.27473 * 116.74703 * 11 10 9 13 13 C 1.55082 * 118.28356 * 275.08398 * 11 10 9 14 14 C 1.47517 * 127.04402 * 185.23647 * 8 6 4 15 15 C 1.50700 * 117.37172 * 64.94085 * 14 8 6 16 16 O 1.21282 * 120.00096 * 215.29404 * 15 14 8 17 17 N 1.34780 * 120.00245 * 35.29018 * 15 14 8 18 18 C 1.47070 * 136.05167 * 4.59307 * 17 15 14 19 19 C 1.53244 * 88.07835 * 207.20672 * 18 17 15 20 20 C 1.50698 * 114.50411 * 220.45957 * 19 18 17 21 21 H 1.07997 * 120.00273 * 93.84719 * 20 19 18 22 22 C 1.37880 * 119.99722 * 273.84916 * 20 19 18 23 23 N 1.31522 * 119.99737 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00240 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47030 * 90.00251 * 24 22 20 26 26 H 1.48498 * 109.46939 * 210.00032 * 24 22 20 27 27 H 1.48495 * 109.47059 * 329.99872 * 24 22 20 28 28 C 1.47060 * 136.05861 * 184.96960 * 17 15 14 29 29 H 1.09000 * 109.47578 * 300.00335 * 1 2 3 30 30 H 1.08995 * 109.47081 * 60.00334 * 1 2 3 31 31 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47578 * 239.99665 * 2 1 3 33 33 H 1.08999 * 109.47002 * 119.99173 * 2 1 3 34 34 H 1.08995 * 109.47745 * 60.00097 * 3 2 1 35 35 H 1.08999 * 109.47404 * 299.99409 * 3 2 1 36 36 H 1.08998 * 110.65893 * 259.21070 * 9 8 6 37 37 H 1.08999 * 110.66226 * 22.16854 * 9 8 6 38 38 H 1.08994 * 110.73074 * 155.76893 * 10 9 8 39 39 H 1.09000 * 110.73672 * 279.08283 * 10 9 8 40 40 H 1.09005 * 117.30584 * 343.82448 * 13 11 10 41 41 H 1.08997 * 117.88675 * 198.58656 * 13 11 10 42 42 H 1.08997 * 113.47079 * 321.94102 * 18 17 15 43 43 H 1.08997 * 113.46549 * 92.38528 * 18 17 15 44 44 H 1.09003 * 114.01465 * 87.72144 * 19 18 17 45 45 H 0.96998 * 119.99700 * 179.97438 * 23 22 20 46 46 H 1.08998 * 113.47183 * 267.61836 * 28 17 15 47 47 H 1.09002 * 113.46849 * 38.00647 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1509 0.3966 0.0015 6 6 4.2924 2.7337 0.0013 7 8 3.6855 3.7848 0.0009 8 7 5.6402 2.7338 0.0024 9 6 6.5325 1.5565 -0.1049 10 6 7.6799 2.0621 -1.0153 11 6 7.8643 3.5262 -0.5552 12 1 8.8233 3.7931 -0.1112 13 6 6.9514 4.6132 -1.1796 14 6 6.5287 3.9064 0.1107 15 6 6.4926 4.6864 1.3996 16 8 6.6315 5.8911 1.3835 17 7 6.3058 4.0453 2.5703 18 6 6.1867 2.6448 3.0034 19 6 5.3401 3.1355 4.1828 20 6 5.6273 2.4421 5.4896 21 1 6.3346 2.8706 6.1842 22 6 4.9871 1.2607 5.7983 23 7 5.2381 0.6553 6.9386 24 14 3.7632 0.5199 4.5972 25 1 4.4733 -0.3963 3.6690 26 1 2.7304 -0.2386 5.3476 27 1 3.1132 1.6056 3.8202 28 6 6.1249 4.4384 3.9758 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.9158 1.2738 0.8756 37 1 6.0107 0.7193 -0.5685 38 1 8.5897 1.4865 -0.8451 39 1 7.3866 2.0212 -2.0643 40 1 6.4170 4.3530 -2.0933 41 1 7.2700 5.6527 -1.1020 42 1 5.6324 2.0196 2.3035 43 1 7.1357 2.2016 3.3051 44 1 4.2756 3.2150 3.9620 45 1 4.7875 -0.1757 7.1560 46 1 7.0572 4.4777 4.5391 47 1 5.5188 5.3357 4.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268913892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:00 Heat of formation + Delta-G solvation = -18.085872 kcal Electronic energy + Delta-G solvation = -30872.453277 eV Core-core repulsion = 26830.641192 eV Total energy + Delta-G solvation = -4041.812085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32603 -40.00260 -38.92932 -38.04286 -37.09554 -34.74154 -33.13927 -32.68975 -30.77113 -29.67691 -28.94928 -26.16022 -25.26392 -25.19293 -23.67438 -22.90582 -21.55294 -21.06083 -20.03634 -19.51785 -18.28155 -17.46701 -17.10924 -16.92715 -16.49624 -15.98322 -15.93461 -15.26907 -14.96953 -14.76192 -14.60769 -14.06121 -13.88031 -13.75531 -13.62921 -13.33278 -13.12309 -12.93655 -12.76238 -12.44553 -12.26366 -12.20316 -12.09123 -11.89146 -11.84531 -11.60315 -11.37985 -11.18009 -11.02939 -10.95133 -10.87659 -10.78610 -10.43860 -10.06631 -9.81136 -9.51532 -9.44335 -9.32229 -8.80877 -8.69692 -8.12357 -6.26539 -4.29270 0.85690 2.18411 2.67699 2.87688 3.14302 3.18459 3.23074 3.24599 3.56283 3.77409 4.24517 4.26361 4.35358 4.48600 4.63035 4.72776 4.78552 4.80867 4.92746 4.97003 5.03005 5.20721 5.31429 5.35249 5.48438 5.51667 5.51819 5.55908 5.62418 5.65007 5.68292 5.84550 5.88477 5.92438 5.93627 5.98047 6.05002 6.08654 6.16225 6.23407 6.33507 6.45851 6.77851 7.10807 7.20429 7.48678 7.76339 8.22132 8.31358 8.52840 8.76902 9.34266 10.85372 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.006987 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.236611 B = 4006.257653 C = 6396.725252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.154 4.154 4 C 0.356 3.644 5 O -0.413 6.413 6 C 0.491 3.509 7 O -0.495 6.495 8 N -0.565 5.565 9 C 0.086 3.914 10 C -0.106 4.106 11 C -0.137 4.137 12 H 0.130 0.870 13 C -0.110 4.110 14 C 0.054 3.946 15 C 0.576 3.424 16 O -0.548 6.548 17 N -0.633 5.633 18 C 0.087 3.913 19 C -0.012 4.012 20 C -0.509 4.509 21 H 0.082 0.918 22 C 0.081 3.919 23 N -0.890 5.890 24 Si 0.864 3.136 25 H -0.271 1.271 26 H -0.283 1.283 27 H -0.264 1.264 28 C 0.116 3.884 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.111 0.889 35 H 0.110 0.890 36 H 0.085 0.915 37 H 0.110 0.890 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.049 0.951 43 H 0.087 0.913 44 H 0.064 0.936 45 H 0.267 0.733 46 H 0.082 0.918 47 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.853 -2.228 -18.302 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.191 4.191 4 C 0.227 3.773 5 O -0.283 6.283 6 C 0.276 3.724 7 O -0.369 6.369 8 N -0.301 5.301 9 C -0.035 4.035 10 C -0.144 4.144 11 C -0.156 4.156 12 H 0.148 0.852 13 C -0.149 4.149 14 C -0.035 4.035 15 C 0.363 3.637 16 O -0.426 6.426 17 N -0.366 5.366 18 C -0.036 4.036 19 C -0.031 4.031 20 C -0.547 4.547 21 H 0.100 0.900 22 C -0.123 4.123 23 N -0.526 5.526 24 Si 0.691 3.309 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.189 1.189 28 C -0.005 4.005 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.129 0.871 35 H 0.128 0.872 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.113 0.887 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.139 0.861 42 H 0.068 0.932 43 H 0.105 0.895 44 H 0.082 0.918 45 H 0.077 0.923 46 H 0.101 0.899 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.934 -1.684 -18.340 18.441 hybrid contribution -0.581 -0.486 -0.402 0.858 sum -1.514 -2.171 -18.742 18.928 Atomic orbital electron populations 1.21766 0.94894 1.02102 1.02172 1.21416 0.96281 0.94478 1.03478 1.21978 0.90688 1.00319 1.06154 1.24860 0.93180 0.87716 0.71584 1.90360 1.71146 1.34477 1.32352 1.20800 0.81285 0.91612 0.78655 1.90794 1.66843 1.32651 1.46642 1.48312 1.03869 1.07571 1.70355 1.23293 0.90274 0.88595 1.01321 1.22462 0.99078 0.92973 0.99890 1.24182 0.93631 0.95173 1.02610 0.85179 1.23727 0.98765 0.98141 0.94257 1.21761 0.93915 0.93545 0.94272 1.18628 0.76481 0.86351 0.82241 1.90660 1.51802 1.13761 1.86412 1.49729 1.69050 1.11482 1.06324 1.23850 1.01218 0.82294 0.96239 1.20859 0.95284 0.92460 0.94539 1.20739 1.26213 1.06943 1.00830 0.90001 1.24957 0.95954 0.96609 0.94772 1.69881 1.42574 1.17926 1.22239 0.87011 0.82139 0.79842 0.81953 1.19589 1.20850 1.18920 1.23149 0.99958 0.99667 0.77768 0.92293 0.92506 0.92231 0.91174 0.91069 0.87113 0.87245 0.89639 0.87204 0.88724 0.90134 0.87851 0.86106 0.93244 0.89533 0.91845 0.92292 0.89943 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.26 5.22 -26.73 -0.14 -1.40 16 3 C -0.15 -1.80 5.28 -27.88 -0.15 -1.95 16 4 C 0.36 5.10 7.18 -29.80 -0.21 4.89 16 5 O -0.41 -6.09 13.40 5.98 0.08 -6.01 16 6 C 0.49 8.12 7.56 -11.75 -0.09 8.03 16 7 O -0.50 -9.52 17.08 5.48 0.09 -9.43 16 8 N -0.56 -8.63 1.86 -156.92 -0.29 -8.92 16 9 C 0.09 1.06 5.94 -2.12 -0.01 1.05 16 10 C -0.11 -0.98 6.88 -24.88 -0.17 -1.15 16 11 C -0.14 -1.57 7.01 -88.17 -0.62 -2.18 16 12 H 0.13 1.37 8.14 -51.93 -0.42 0.95 16 13 C -0.11 -1.40 9.92 -25.59 -0.25 -1.65 16 14 C 0.05 0.85 2.26 -131.85 -0.30 0.56 16 15 C 0.58 11.48 7.94 -10.98 -0.09 11.39 16 16 O -0.55 -12.32 17.27 5.56 0.10 -12.22 16 17 N -0.63 -12.83 3.68 -185.37 -0.68 -13.51 16 18 C 0.09 1.75 6.45 -8.63 -0.06 1.69 16 19 C -0.01 -0.27 2.98 -91.39 -0.27 -0.54 16 20 C -0.51 -13.24 9.39 -34.44 -0.32 -13.57 16 21 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 22 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 23 N -0.89 -25.54 13.96 55.43 0.77 -24.77 16 24 Si 0.86 20.16 27.42 -169.99 -4.66 15.50 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 27 H -0.26 -5.98 6.22 56.52 0.35 -5.63 16 28 C 0.12 2.40 8.19 -8.50 -0.07 2.33 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.69 8.10 -51.93 -0.42 0.27 16 33 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 34 H 0.11 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.09 1.13 6.69 -51.93 -0.35 0.78 16 37 H 0.11 1.28 5.72 -51.93 -0.30 0.98 16 38 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.12 1.55 7.86 -51.93 -0.41 1.15 16 42 H 0.05 0.97 5.54 -51.93 -0.29 0.69 16 43 H 0.09 1.69 8.10 -51.93 -0.42 1.27 16 44 H 0.06 1.50 6.50 -51.93 -0.34 1.16 16 45 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 46 H 0.08 1.64 8.10 -51.93 -0.42 1.22 16 47 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 385.16 15.07 5.80 5.80 Total: -1.00 -32.62 385.16 -8.46 -41.08 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -7.20 Total: 3.86 kcal Atomic # 6 Polarization: 11.10 SS G_CDS: -2.48 Total: 8.62 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.20 Total: -47.20 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: 0.27 Total: -27.66 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -4.66 Total: 15.50 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -32.62 -8.46 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268913892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.993 kcal (2) G-P(sol) polarization free energy of solvation -32.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds