Wall clock time and date at job start Tue Mar 31 2020 17:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.46814 * 2 1 4 4 C 1.50700 * 109.46936 * 179.97438 * 3 2 1 5 5 O 1.20781 * 120.00203 * 359.97438 * 4 3 2 6 6 C 1.49089 * 120.00158 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99772 * 359.97438 * 6 4 3 8 8 N 1.34782 * 120.00430 * 179.97438 * 6 4 3 9 9 C 1.48117 * 127.03800 * 5.23662 * 8 6 4 10 10 C 1.54949 * 103.25412 * 140.77413 * 9 8 6 11 11 C 1.54572 * 102.85903 * 37.43081 * 10 9 8 12 12 H 1.08997 * 117.27473 * 116.74703 * 11 10 9 13 13 C 1.55082 * 118.28356 * 275.08398 * 11 10 9 14 14 C 1.47517 * 127.04402 * 185.23647 * 8 6 4 15 15 C 1.50700 * 117.37172 * 64.94085 * 14 8 6 16 16 O 1.21282 * 120.00096 * 215.29404 * 15 14 8 17 17 N 1.34780 * 120.00245 * 35.29018 * 15 14 8 18 18 C 1.47070 * 136.05167 * 4.59307 * 17 15 14 19 19 C 1.53244 * 88.07835 * 207.20672 * 18 17 15 20 20 C 1.50698 * 114.50411 * 220.45957 * 19 18 17 21 21 H 1.07997 * 120.00273 * 93.84719 * 20 19 18 22 22 C 1.37880 * 119.99722 * 273.84916 * 20 19 18 23 23 N 1.31522 * 119.99737 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00240 * 359.97438 * 22 20 19 25 25 H 1.48492 * 109.47030 * 90.00251 * 24 22 20 26 26 H 1.48498 * 109.46939 * 210.00032 * 24 22 20 27 27 H 1.48495 * 109.47059 * 329.99872 * 24 22 20 28 28 C 1.47060 * 136.05861 * 184.96960 * 17 15 14 29 29 H 1.09000 * 109.47578 * 300.00335 * 1 2 3 30 30 H 1.08995 * 109.47081 * 60.00334 * 1 2 3 31 31 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47578 * 239.99665 * 2 1 3 33 33 H 1.08999 * 109.47002 * 119.99173 * 2 1 3 34 34 H 1.08995 * 109.47745 * 60.00097 * 3 2 1 35 35 H 1.08999 * 109.47404 * 299.99409 * 3 2 1 36 36 H 1.08998 * 110.65893 * 259.21070 * 9 8 6 37 37 H 1.08999 * 110.66226 * 22.16854 * 9 8 6 38 38 H 1.08994 * 110.73074 * 155.76893 * 10 9 8 39 39 H 1.09000 * 110.73672 * 279.08283 * 10 9 8 40 40 H 1.09005 * 117.30584 * 343.82448 * 13 11 10 41 41 H 1.08997 * 117.88675 * 198.58656 * 13 11 10 42 42 H 1.08997 * 113.47079 * 321.94102 * 18 17 15 43 43 H 1.08997 * 113.46549 * 92.38528 * 18 17 15 44 44 H 1.09003 * 114.01465 * 87.72144 * 19 18 17 45 45 H 0.96998 * 119.99700 * 179.97438 * 23 22 20 46 46 H 1.08998 * 113.47183 * 267.61836 * 28 17 15 47 47 H 1.09002 * 113.46849 * 38.00647 * 28 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 8 4.1509 0.3966 0.0015 6 6 4.2924 2.7337 0.0013 7 8 3.6855 3.7848 0.0009 8 7 5.6402 2.7338 0.0024 9 6 6.5325 1.5565 -0.1049 10 6 7.6799 2.0621 -1.0153 11 6 7.8643 3.5262 -0.5552 12 1 8.8233 3.7931 -0.1112 13 6 6.9514 4.6132 -1.1796 14 6 6.5287 3.9064 0.1107 15 6 6.4926 4.6864 1.3996 16 8 6.6315 5.8911 1.3835 17 7 6.3058 4.0453 2.5703 18 6 6.1867 2.6448 3.0034 19 6 5.3401 3.1355 4.1828 20 6 5.6273 2.4421 5.4896 21 1 6.3346 2.8706 6.1842 22 6 4.9871 1.2607 5.7983 23 7 5.2381 0.6553 6.9386 24 14 3.7632 0.5199 4.5972 25 1 4.4733 -0.3963 3.6690 26 1 2.7304 -0.2386 5.3476 27 1 3.1132 1.6056 3.8202 28 6 6.1249 4.4384 3.9758 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.9158 1.2738 0.8756 37 1 6.0107 0.7193 -0.5685 38 1 8.5897 1.4865 -0.8451 39 1 7.3866 2.0212 -2.0643 40 1 6.4170 4.3530 -2.0933 41 1 7.2700 5.6527 -1.1020 42 1 5.6324 2.0196 2.3035 43 1 7.1357 2.2016 3.3051 44 1 4.2756 3.2150 3.9620 45 1 4.7875 -0.1757 7.1560 46 1 7.0572 4.4777 4.5391 47 1 5.5188 5.3357 4.1010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268913892.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:59 Heat of formation + Delta-G solvation = -37.885477 kcal Electronic energy + Delta-G solvation = -30873.311853 eV Core-core repulsion = 26830.641192 eV Total energy + Delta-G solvation = -4042.670661 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.50716 -41.30487 -40.31964 -39.32161 -38.64548 -35.58893 -34.76826 -34.20638 -31.94258 -31.23597 -29.85663 -27.80903 -26.96708 -26.42797 -24.63140 -24.17148 -22.70204 -21.98809 -21.36898 -20.88498 -19.65843 -19.26023 -18.67723 -18.09591 -17.68736 -17.29517 -17.01616 -16.81051 -16.34478 -16.01602 -15.78360 -15.61111 -15.28691 -14.96472 -14.72283 -14.66225 -14.48318 -14.05861 -13.99349 -13.73662 -13.69174 -13.55680 -13.09464 -13.04758 -13.00387 -12.85115 -12.69677 -12.63230 -12.17671 -12.13552 -11.99933 -11.91366 -11.73215 -11.64825 -11.50909 -11.35169 -10.87964 -10.73718 -10.57581 -10.01198 -9.78977 -8.35913 -6.42658 -0.28399 0.97339 1.28270 1.31124 1.37818 1.42268 1.65884 1.74200 2.26983 2.39682 2.70035 2.92815 3.17580 3.32211 3.47897 3.52755 3.72902 3.85498 3.86845 3.96982 4.06840 4.13688 4.19309 4.29883 4.37646 4.40864 4.46294 4.48452 4.55882 4.61163 4.63585 4.65172 4.67623 4.69697 4.80791 4.81476 4.92247 5.01732 5.13181 5.17268 5.17591 5.23872 5.36809 5.49924 5.68833 6.07439 6.20241 6.56619 6.61731 6.66829 6.94445 7.24100 8.79318 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.006987 C = 0.004376 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.236611 B = 4006.257653 C = 6396.725252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.116 4.116 3 C -0.153 4.153 4 C 0.358 3.642 5 O -0.418 6.418 6 C 0.480 3.520 7 O -0.534 6.534 8 N -0.562 5.562 9 C 0.078 3.922 10 C -0.093 4.093 11 C -0.102 4.102 12 H 0.143 0.857 13 C -0.101 4.101 14 C 0.011 3.989 15 C 0.569 3.431 16 O -0.582 6.582 17 N -0.636 5.636 18 C 0.106 3.894 19 C -0.018 4.018 20 C -0.508 4.508 21 H 0.051 0.949 22 C 0.033 3.967 23 N -0.934 5.934 24 Si 0.918 3.082 25 H -0.257 1.257 26 H -0.281 1.281 27 H -0.257 1.257 28 C 0.116 3.884 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.079 0.921 33 H 0.053 0.947 34 H 0.103 0.897 35 H 0.131 0.869 36 H 0.076 0.924 37 H 0.118 0.882 38 H 0.125 0.875 39 H 0.101 0.899 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.057 0.943 43 H 0.094 0.906 44 H 0.054 0.946 45 H 0.270 0.730 46 H 0.088 0.912 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 -3.598 -21.375 21.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.190 4.190 4 C 0.229 3.771 5 O -0.289 6.289 6 C 0.266 3.734 7 O -0.411 6.411 8 N -0.297 5.297 9 C -0.042 4.042 10 C -0.130 4.130 11 C -0.121 4.121 12 H 0.161 0.839 13 C -0.140 4.140 14 C -0.078 4.078 15 C 0.359 3.641 16 O -0.462 6.462 17 N -0.369 5.369 18 C -0.016 4.016 19 C -0.037 4.037 20 C -0.546 4.546 21 H 0.069 0.931 22 C -0.167 4.167 23 N -0.572 5.572 24 Si 0.742 3.258 25 H -0.182 1.182 26 H -0.206 1.206 27 H -0.181 1.181 28 C -0.006 4.006 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.098 0.902 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.149 0.851 36 H 0.094 0.906 37 H 0.136 0.864 38 H 0.143 0.857 39 H 0.120 0.880 40 H 0.138 0.862 41 H 0.133 0.867 42 H 0.075 0.925 43 H 0.112 0.888 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.106 0.894 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.646 -3.074 -21.434 21.663 hybrid contribution -0.594 0.038 0.615 0.856 sum -1.240 -3.036 -20.819 21.076 Atomic orbital electron populations 1.21766 0.93455 1.02875 1.02668 1.21420 0.97506 0.93417 1.03053 1.22074 0.88794 1.01359 1.06779 1.25012 0.94075 0.86700 0.71295 1.90351 1.71460 1.34220 1.32846 1.21353 0.81826 0.92030 0.78144 1.90767 1.67720 1.33950 1.48649 1.48501 1.03810 1.08336 1.69051 1.23511 0.90909 0.88021 1.01732 1.22544 0.99114 0.91123 1.00242 1.24472 0.92020 0.96128 0.99441 0.83931 1.23818 0.98653 0.98366 0.93131 1.21791 0.97459 0.95248 0.93308 1.19418 0.75143 0.86361 0.83171 1.90629 1.53208 1.15349 1.87048 1.49737 1.69487 1.11302 1.06327 1.23547 1.00898 0.82358 0.94825 1.20718 0.95274 0.93737 0.93998 1.20832 1.25192 1.06899 1.01687 0.93094 1.25647 0.97697 0.97085 0.96227 1.69998 1.44247 1.18745 1.24250 0.86134 0.80110 0.79392 0.80134 1.18151 1.20617 1.18125 1.23056 0.99942 0.98703 0.78896 0.92785 0.91068 0.91343 0.90246 0.92827 0.87859 0.85093 0.90559 0.86415 0.85683 0.88021 0.86166 0.86732 0.92511 0.88772 0.92792 0.92096 0.89353 0.92062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.91 71.98 0.71 -1.57 16 2 C -0.12 -2.23 5.22 30.59 0.16 -2.07 16 3 C -0.15 -3.31 5.28 29.85 0.16 -3.16 16 4 C 0.36 9.65 7.18 28.60 0.21 9.86 16 5 O -0.42 -11.40 13.40 -1.51 -0.02 -11.42 16 6 C 0.48 15.30 7.56 87.16 0.66 15.96 16 7 O -0.53 -20.38 17.08 -3.31 -0.06 -20.44 16 8 N -0.56 -16.06 1.86 -768.72 -1.43 -17.49 16 9 C 0.08 1.68 5.94 86.73 0.51 2.20 16 10 C -0.09 -1.29 6.88 31.80 0.22 -1.07 16 11 C -0.10 -1.97 7.01 -9.20 -0.06 -2.03 16 12 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 13 C -0.10 -2.32 9.92 31.33 0.31 -2.01 16 14 C 0.01 0.33 2.26 3.03 0.01 0.33 16 15 C 0.57 22.43 7.94 87.66 0.70 23.13 16 16 O -0.58 -26.28 17.27 -3.04 -0.05 -26.33 16 17 N -0.64 -25.57 3.68 -858.79 -3.16 -28.73 16 18 C 0.11 4.19 6.45 83.10 0.54 4.73 16 19 C -0.02 -0.80 2.98 -11.29 -0.03 -0.84 16 20 C -0.51 -26.95 9.39 25.60 0.24 -26.71 16 21 H 0.05 2.96 8.06 -2.91 -0.02 2.93 16 22 C 0.03 1.81 5.47 84.65 0.46 2.27 16 23 N -0.93 -54.61 13.96 21.45 0.30 -54.31 16 24 Si 0.92 41.40 27.42 68.60 1.88 43.28 16 25 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 H -0.26 -11.16 6.22 99.48 0.62 -10.54 16 28 C 0.12 4.87 8.19 83.19 0.68 5.55 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.36 8.10 -2.39 -0.02 1.34 16 33 H 0.05 1.21 8.10 -2.39 -0.02 1.19 16 34 H 0.10 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.13 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.08 1.79 6.69 -2.39 -0.02 1.78 16 37 H 0.12 2.37 5.72 -2.39 -0.01 2.35 16 38 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.12 2.33 8.14 -2.38 -0.02 2.31 16 41 H 0.11 2.77 7.86 -2.39 -0.02 2.75 16 42 H 0.06 2.16 5.54 -2.39 -0.01 2.14 16 43 H 0.09 3.57 8.10 -2.39 -0.02 3.55 16 44 H 0.05 2.56 6.50 -2.39 -0.02 2.55 16 45 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 46 H 0.09 3.57 8.10 -2.39 -0.02 3.55 16 47 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -72.48 385.16 3.81 -68.67 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: 0.89 Total: 22.20 kcal Atomic # 6 Polarization: 19.11 SS G_CDS: 5.47 Total: 24.58 kcal Atomic # 7 Polarization: -96.24 SS G_CDS: -4.29 Total: -100.53 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.13 Total: -58.19 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 1.88 Total: 43.28 kcal Total: -72.48 3.81 -68.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268913892.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.783 kcal (2) G-P(sol) polarization free energy of solvation -72.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds