Wall clock time and date at job start Tue Mar 31 2020 17:27:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46849 * 2 1 4 4 C 1.50698 * 109.47090 * 180.02562 * 3 2 1 5 5 O 1.20785 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.49086 * 120.00244 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99929 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00278 * 180.02562 * 6 4 3 9 9 C 1.47723 * 134.39405 * 180.02562 * 8 6 4 10 10 C 1.53292 * 85.85883 * 155.86763 * 9 8 6 11 11 C 1.52468 * 128.81348 * 243.33140 * 10 9 8 12 12 C 1.52325 * 128.82123 * 163.01477 * 10 9 8 13 13 H 1.08999 * 117.51719 * 10.40270 * 12 10 9 14 14 C 1.50700 * 117.51312 * 225.33139 * 12 10 9 15 15 O 1.21282 * 120.00222 * 0.16917 * 14 12 10 16 16 N 1.34780 * 120.00120 * 180.16645 * 14 12 10 17 17 C 1.47067 * 136.05152 * 359.63028 * 16 14 12 18 18 C 1.53497 * 87.98534 * 153.13820 * 17 16 14 19 19 C 1.50698 * 114.38966 * 139.66545 * 18 17 16 20 20 H 1.07996 * 120.00304 * 266.31457 * 19 18 17 21 21 C 1.37877 * 119.99717 * 86.31599 * 19 18 17 22 22 N 1.31516 * 120.00413 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99925 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46837 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47477 * 119.99690 * 23 21 19 26 26 H 1.48503 * 109.47224 * 240.00053 * 23 21 19 27 27 C 1.47066 * 136.06263 * 180.02562 * 16 14 12 28 28 C 1.47729 * 134.39512 * 359.94303 * 8 6 4 29 29 H 1.08994 * 109.47337 * 60.00199 * 1 2 3 30 30 H 1.08999 * 109.46539 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47219 * 300.00109 * 1 2 3 32 32 H 1.08997 * 109.47219 * 239.99891 * 2 1 3 33 33 H 1.09003 * 109.47128 * 119.99681 * 2 1 3 34 34 H 1.08997 * 109.47299 * 59.99940 * 3 2 1 35 35 H 1.09003 * 109.46995 * 299.99762 * 3 2 1 36 36 H 1.08996 * 113.81768 * 41.63162 * 9 8 6 37 37 H 1.09005 * 113.91907 * 270.10910 * 9 8 6 38 38 H 1.09000 * 117.54569 * 134.70489 * 11 10 9 39 39 H 1.08998 * 117.50796 * 349.54469 * 11 10 9 40 40 H 1.09007 * 113.46858 * 267.91303 * 17 16 14 41 41 H 1.08993 * 113.47208 * 38.35639 * 17 16 14 42 42 H 1.09006 * 114.20377 * 272.47966 * 18 17 16 43 43 H 0.96998 * 119.99931 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.46156 * 321.64401 * 27 16 14 45 45 H 1.08998 * 113.46839 * 92.07769 * 27 16 14 46 46 H 1.09001 * 113.80645 * 89.89915 * 28 8 6 47 47 H 1.09003 * 113.80846 * 318.36999 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1509 0.3966 -0.0006 6 6 4.2924 2.7337 -0.0002 7 8 3.6855 3.7848 0.0002 8 7 5.6401 2.7338 -0.0013 9 6 6.6735 3.7894 -0.0008 10 6 7.5936 2.7334 0.6222 11 6 8.2550 2.7329 1.9960 12 6 9.1132 2.7334 0.7275 13 1 9.6357 3.6556 0.4732 14 6 9.8355 1.4586 0.3751 15 8 9.2071 0.4837 0.0205 16 7 11.1798 1.4017 0.4539 17 6 12.2592 2.3312 0.8195 18 6 13.0970 1.1119 1.2288 19 6 14.5505 1.1966 0.8400 20 1 14.8864 0.7651 -0.0913 21 6 15.4515 1.8250 1.6733 22 7 15.0424 2.3509 2.8072 23 14 17.2531 1.9306 1.1910 24 1 17.4536 1.2670 -0.1224 25 1 17.6564 3.3564 1.0923 26 1 18.0816 1.2519 2.2197 27 6 12.2132 0.3853 0.2053 28 6 6.6737 1.6783 -0.0019 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4494 4.6244 0.6629 37 1 6.9805 4.1078 -0.9971 38 1 8.2131 1.8106 2.5753 39 1 8.2125 3.6551 2.5755 40 1 12.6707 2.8748 -0.0310 41 1 12.0058 2.9839 1.6548 42 1 12.9447 0.7905 2.2593 43 1 15.6764 2.7926 3.3935 44 1 11.9203 -0.6169 0.5184 45 1 12.6123 0.4109 -0.8086 46 1 6.9794 1.3625 -0.9994 47 1 6.4495 0.8425 0.6609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268914124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:17 Heat of formation + Delta-G solvation = -3.742333 kcal Electronic energy + Delta-G solvation = -27905.891767 eV Core-core repulsion = 23864.701664 eV Total energy + Delta-G solvation = -4041.190103 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.16073 -40.06167 -39.14937 -38.20284 -36.99954 -34.95368 -34.44765 -32.73774 -29.58972 -29.21873 -28.34856 -26.55148 -25.64568 -25.03256 -24.18554 -23.26231 -21.50833 -20.48291 -19.48577 -18.90470 -18.08131 -17.48850 -17.11082 -16.86363 -16.60288 -16.33578 -15.76451 -15.47219 -15.15336 -14.74228 -14.67318 -14.47201 -14.19370 -13.79638 -13.50423 -13.38470 -13.16788 -13.10440 -12.53471 -12.43397 -12.35540 -12.30998 -11.96922 -11.68052 -11.59655 -11.56760 -11.36228 -11.14665 -11.05833 -11.00590 -10.84855 -10.73572 -10.40437 -10.33896 -9.66337 -9.53297 -9.27159 -9.07679 -8.98512 -8.63903 -7.94163 -6.23447 -4.29129 0.75113 2.17597 2.71230 2.86147 3.19395 3.28294 3.30760 3.36472 3.51109 3.75790 4.10219 4.29472 4.34619 4.36434 4.55216 4.59740 4.73766 4.98884 5.03479 5.04262 5.10934 5.11761 5.17986 5.23049 5.29616 5.33369 5.38789 5.49491 5.60674 5.65980 5.70111 5.73270 5.76889 5.86583 5.89407 5.99987 6.11404 6.20692 6.38675 6.50108 6.59962 6.67034 6.75993 7.26485 7.50116 7.64214 7.74476 8.12481 8.43600 8.67606 8.75499 9.38196 10.86254 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.001900 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.223278 B =14733.868760 C =15224.051246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.151 4.151 4 C 0.351 3.649 5 O -0.411 6.411 6 C 0.496 3.504 7 O -0.521 6.521 8 N -0.620 5.620 9 C 0.149 3.851 10 C -0.158 4.158 11 C -0.110 4.110 12 C -0.148 4.148 13 H 0.127 0.873 14 C 0.559 3.441 15 O -0.561 6.561 16 N -0.638 5.638 17 C 0.098 3.902 18 C 0.034 3.966 19 C -0.517 4.517 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.885 5.885 23 Si 0.895 3.105 24 H -0.271 1.271 25 H -0.283 1.283 26 H -0.283 1.283 27 C 0.100 3.900 28 C 0.164 3.836 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.106 0.894 39 H 0.111 0.889 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.264 0.736 44 H 0.057 0.943 45 H 0.074 0.926 46 H 0.101 0.899 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.761 1.972 -3.707 22.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.157 4.157 3 C -0.189 4.189 4 C 0.221 3.779 5 O -0.280 6.280 6 C 0.282 3.718 7 O -0.398 6.398 8 N -0.356 5.356 9 C 0.027 3.973 10 C -0.160 4.160 11 C -0.148 4.148 12 C -0.170 4.170 13 H 0.145 0.855 14 C 0.348 3.652 15 O -0.442 6.442 16 N -0.371 5.371 17 C -0.025 4.025 18 C 0.015 3.985 19 C -0.556 4.556 20 H 0.082 0.918 21 C -0.135 4.135 22 N -0.522 5.522 23 Si 0.723 3.277 24 H -0.195 1.195 25 H -0.209 1.209 26 H -0.209 1.209 27 C -0.022 4.022 28 C 0.043 3.957 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.126 0.874 35 H 0.125 0.875 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.076 0.924 45 H 0.092 0.908 46 H 0.119 0.881 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -22.466 1.536 -3.748 22.829 hybrid contribution 1.161 0.460 -0.275 1.279 sum -21.305 1.996 -4.023 21.774 Atomic orbital electron populations 1.21765 0.95005 1.02091 1.02056 1.21410 0.96097 0.94636 1.03514 1.21943 0.91006 1.00023 1.05885 1.24853 0.92922 0.87888 0.72254 1.90462 1.71601 1.34335 1.31554 1.20698 0.81169 0.91373 0.78571 1.90753 1.67063 1.32894 1.49110 1.50015 1.03440 1.12573 1.69604 1.22741 0.81890 0.91605 1.01045 1.22569 0.92468 0.98662 1.02262 1.22853 0.98499 1.04518 0.88900 1.22115 0.91376 0.99175 1.04349 0.85478 1.18991 0.80657 0.87913 0.77646 1.90638 1.66071 1.37642 1.49848 1.49934 1.03069 1.19318 1.64733 1.23632 0.83712 0.96554 0.98563 1.20348 0.93109 0.89933 0.95078 1.20943 0.91364 1.37365 1.05882 0.91758 1.25028 0.99095 0.94818 0.94567 1.69956 1.35083 1.36501 1.10660 0.86483 0.84611 0.77851 0.78766 1.19547 1.20893 1.20856 1.23371 0.85159 0.92678 1.00949 1.22709 0.80188 0.90924 1.01860 0.92498 0.92278 0.92480 0.91188 0.91161 0.87434 0.87488 0.89182 0.88477 0.87528 0.87118 0.90762 0.92032 0.91345 0.92657 0.92403 0.90828 0.88123 0.88694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.85 5.22 -26.73 -0.14 -0.99 16 3 C -0.15 -1.15 5.28 -27.88 -0.15 -1.30 16 4 C 0.35 3.79 7.21 -29.81 -0.21 3.57 16 5 O -0.41 -5.23 14.70 5.98 0.09 -5.15 16 6 C 0.50 6.22 8.09 -11.76 -0.10 6.13 16 7 O -0.52 -7.50 17.39 5.48 0.10 -7.40 16 8 N -0.62 -7.63 3.61 -182.37 -0.66 -8.29 16 9 C 0.15 1.56 8.85 -3.22 -0.03 1.53 16 10 C -0.16 -1.90 3.04 -154.96 -0.47 -2.37 16 11 C -0.11 -1.30 10.24 -26.93 -0.28 -1.57 16 12 C -0.15 -2.01 6.01 -92.04 -0.55 -2.57 16 13 H 0.13 1.53 8.14 -51.93 -0.42 1.11 16 14 C 0.56 10.06 7.86 -10.98 -0.09 9.97 16 15 O -0.56 -11.40 15.91 5.56 0.09 -11.31 16 16 N -0.64 -12.26 3.69 -185.21 -0.68 -12.94 16 17 C 0.10 1.94 7.99 -8.51 -0.07 1.87 16 18 C 0.03 0.78 3.78 -91.25 -0.34 0.43 16 19 C -0.52 -12.76 8.83 -34.44 -0.30 -13.06 16 20 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 21 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -23.41 13.26 55.43 0.74 -22.68 16 23 Si 0.90 19.56 29.54 -169.99 -5.02 14.54 16 24 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 27 C 0.10 2.01 8.18 -8.50 -0.07 1.94 16 28 C 0.16 2.15 6.16 -3.23 -0.02 2.13 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 32 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 33 H 0.07 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.11 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.07 1.44 8.10 -51.93 -0.42 1.02 16 41 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 42 H 0.07 1.69 8.11 -51.93 -0.42 1.27 16 43 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 46 H 0.10 1.38 8.01 -51.93 -0.42 0.96 16 47 H 0.09 1.34 7.44 -51.93 -0.39 0.95 16 LS Contribution 401.32 15.07 6.05 6.05 Total: -1.00 -29.79 401.32 -9.38 -39.17 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -7.52 Total: 1.14 kcal Atomic # 6 Polarization: 9.42 SS G_CDS: -2.55 Total: 6.87 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: -0.61 Total: -43.91 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: 0.27 Total: -23.86 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.02 Total: 14.54 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -29.79 -9.38 -39.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268914124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.425 kcal (2) G-P(sol) polarization free energy of solvation -29.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds