Wall clock time and date at job start Tue Mar 31 2020 17:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.46849 * 2 1 4 4 C 1.50698 * 109.47090 * 180.02562 * 3 2 1 5 5 O 1.20785 * 119.99924 * 359.97438 * 4 3 2 6 6 C 1.49086 * 120.00244 * 180.02562 * 4 3 2 7 7 O 1.21372 * 119.99929 * 359.97438 * 6 4 3 8 8 N 1.34774 * 120.00278 * 180.02562 * 6 4 3 9 9 C 1.47723 * 134.39405 * 180.02562 * 8 6 4 10 10 C 1.53292 * 85.85883 * 155.86763 * 9 8 6 11 11 C 1.52468 * 128.81348 * 243.33140 * 10 9 8 12 12 C 1.52325 * 128.82123 * 163.01477 * 10 9 8 13 13 H 1.08999 * 117.51719 * 10.40270 * 12 10 9 14 14 C 1.50700 * 117.51312 * 225.33139 * 12 10 9 15 15 O 1.21282 * 120.00222 * 0.16917 * 14 12 10 16 16 N 1.34780 * 120.00120 * 180.16645 * 14 12 10 17 17 C 1.47067 * 136.05152 * 359.63028 * 16 14 12 18 18 C 1.53497 * 87.98534 * 153.13820 * 17 16 14 19 19 C 1.50698 * 114.38966 * 139.66545 * 18 17 16 20 20 H 1.07996 * 120.00304 * 266.31457 * 19 18 17 21 21 C 1.37877 * 119.99717 * 86.31599 * 19 18 17 22 22 N 1.31516 * 120.00413 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99925 * 180.02562 * 21 19 18 24 24 H 1.48510 * 109.46837 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47477 * 119.99690 * 23 21 19 26 26 H 1.48503 * 109.47224 * 240.00053 * 23 21 19 27 27 C 1.47066 * 136.06263 * 180.02562 * 16 14 12 28 28 C 1.47729 * 134.39512 * 359.94303 * 8 6 4 29 29 H 1.08994 * 109.47337 * 60.00199 * 1 2 3 30 30 H 1.08999 * 109.46539 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47219 * 300.00109 * 1 2 3 32 32 H 1.08997 * 109.47219 * 239.99891 * 2 1 3 33 33 H 1.09003 * 109.47128 * 119.99681 * 2 1 3 34 34 H 1.08997 * 109.47299 * 59.99940 * 3 2 1 35 35 H 1.09003 * 109.46995 * 299.99762 * 3 2 1 36 36 H 1.08996 * 113.81768 * 41.63162 * 9 8 6 37 37 H 1.09005 * 113.91907 * 270.10910 * 9 8 6 38 38 H 1.09000 * 117.54569 * 134.70489 * 11 10 9 39 39 H 1.08998 * 117.50796 * 349.54469 * 11 10 9 40 40 H 1.09007 * 113.46858 * 267.91303 * 17 16 14 41 41 H 1.08993 * 113.47208 * 38.35639 * 17 16 14 42 42 H 1.09006 * 114.20377 * 272.47966 * 18 17 16 43 43 H 0.96998 * 119.99931 * 179.97438 * 22 21 19 44 44 H 1.09005 * 113.46156 * 321.64401 * 27 16 14 45 45 H 1.08998 * 113.46839 * 92.07769 * 27 16 14 46 46 H 1.09001 * 113.80645 * 89.89915 * 28 8 6 47 47 H 1.09003 * 113.80846 * 318.36999 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5469 1.4426 -0.0006 5 8 4.1509 0.3966 -0.0006 6 6 4.2924 2.7337 -0.0002 7 8 3.6855 3.7848 0.0002 8 7 5.6401 2.7338 -0.0013 9 6 6.6735 3.7894 -0.0008 10 6 7.5936 2.7334 0.6222 11 6 8.2550 2.7329 1.9960 12 6 9.1132 2.7334 0.7275 13 1 9.6357 3.6556 0.4732 14 6 9.8355 1.4586 0.3751 15 8 9.2071 0.4837 0.0205 16 7 11.1798 1.4017 0.4539 17 6 12.2592 2.3312 0.8195 18 6 13.0970 1.1119 1.2288 19 6 14.5505 1.1966 0.8400 20 1 14.8864 0.7651 -0.0913 21 6 15.4515 1.8250 1.6733 22 7 15.0424 2.3509 2.8072 23 14 17.2531 1.9306 1.1910 24 1 17.4536 1.2670 -0.1224 25 1 17.6564 3.3564 1.0923 26 1 18.0816 1.2519 2.2197 27 6 12.2132 0.3853 0.2053 28 6 6.6737 1.6783 -0.0019 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 1.6766 1.9564 0.8899 35 1 1.6766 1.9563 -0.8900 36 1 6.4494 4.6244 0.6629 37 1 6.9805 4.1078 -0.9971 38 1 8.2131 1.8106 2.5753 39 1 8.2125 3.6551 2.5755 40 1 12.6707 2.8748 -0.0310 41 1 12.0058 2.9839 1.6548 42 1 12.9447 0.7905 2.2593 43 1 15.6764 2.7926 3.3935 44 1 11.9203 -0.6169 0.5184 45 1 12.6123 0.4109 -0.8086 46 1 6.9794 1.3625 -0.9994 47 1 6.4495 0.8425 0.6609 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268914124.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:27:16 Heat of formation + Delta-G solvation = -20.277999 kcal Electronic energy + Delta-G solvation = -27906.608807 eV Core-core repulsion = 23864.701664 eV Total energy + Delta-G solvation = -4041.907143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.15396 -41.25535 -40.39968 -39.31672 -38.43284 -35.77998 -35.31173 -34.62582 -31.12235 -30.11047 -29.19487 -27.51203 -27.34736 -26.68046 -24.95968 -24.56903 -22.26333 -21.90326 -20.53712 -19.93193 -19.41339 -18.80268 -18.41893 -18.05572 -17.70483 -17.50911 -16.80202 -16.55263 -16.41826 -16.25353 -15.97978 -15.46167 -15.28684 -14.97706 -14.52105 -14.44749 -14.31130 -14.12887 -13.96737 -13.65252 -13.24547 -13.18281 -13.11117 -13.00178 -12.92794 -12.75130 -12.60133 -12.56266 -12.17146 -12.10260 -12.05003 -11.73623 -11.68393 -11.36226 -11.32523 -11.03277 -10.69807 -10.50303 -10.45893 -10.00168 -9.53769 -8.15431 -6.26008 -0.15002 1.24145 1.46943 1.50740 1.52191 1.61068 1.81011 1.96391 2.47294 2.55503 2.74049 3.03439 3.15542 3.34104 3.63092 3.65082 3.79866 3.94950 4.04041 4.05217 4.24574 4.29597 4.39595 4.43446 4.45828 4.50310 4.51058 4.56194 4.63039 4.64274 4.72780 4.72863 4.75201 4.77885 4.85139 4.85950 4.91656 5.03009 5.12676 5.18695 5.21738 5.41047 5.61977 5.82606 5.83564 6.25202 6.27855 6.68747 6.82802 6.93158 7.18242 7.44167 8.94545 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.031984 B = 0.001900 C = 0.001839 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.223278 B =14733.868760 C =15224.051246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.117 4.117 3 C -0.145 4.145 4 C 0.356 3.644 5 O -0.436 6.436 6 C 0.492 3.508 7 O -0.539 6.539 8 N -0.623 5.623 9 C 0.154 3.846 10 C -0.150 4.150 11 C -0.100 4.100 12 C -0.156 4.156 13 H 0.149 0.851 14 C 0.554 3.446 15 O -0.589 6.589 16 N -0.641 5.641 17 C 0.116 3.884 18 C 0.021 3.979 19 C -0.527 4.527 20 H 0.065 0.935 21 C 0.023 3.977 22 N -0.917 5.917 23 Si 0.956 3.044 24 H -0.265 1.265 25 H -0.280 1.280 26 H -0.285 1.285 27 C 0.105 3.895 28 C 0.163 3.837 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.108 0.892 37 H 0.114 0.886 38 H 0.094 0.906 39 H 0.142 0.858 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.039 0.961 43 H 0.264 0.736 44 H 0.054 0.946 45 H 0.083 0.917 46 H 0.091 0.909 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.668 3.491 -4.211 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.155 4.155 3 C -0.182 4.182 4 C 0.227 3.773 5 O -0.307 6.307 6 C 0.279 3.721 7 O -0.418 6.418 8 N -0.359 5.359 9 C 0.033 3.967 10 C -0.152 4.152 11 C -0.137 4.137 12 C -0.178 4.178 13 H 0.167 0.833 14 C 0.345 3.655 15 O -0.471 6.471 16 N -0.374 5.374 17 C -0.006 4.006 18 C 0.001 3.999 19 C -0.565 4.565 20 H 0.083 0.917 21 C -0.177 4.177 22 N -0.555 5.555 23 Si 0.782 3.218 24 H -0.189 1.189 25 H -0.205 1.205 26 H -0.211 1.211 27 C -0.018 4.018 28 C 0.041 3.959 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.126 0.874 37 H 0.132 0.868 38 H 0.113 0.887 39 H 0.160 0.840 40 H 0.100 0.900 41 H 0.083 0.917 42 H 0.057 0.943 43 H 0.073 0.927 44 H 0.072 0.928 45 H 0.101 0.899 46 H 0.109 0.891 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.382 3.060 -4.262 23.964 hybrid contribution 1.405 -0.102 -0.120 1.413 sum -21.978 2.958 -4.381 22.605 Atomic orbital electron populations 1.21748 0.93437 1.02584 1.02821 1.21396 0.97378 0.94114 1.02614 1.22020 0.88405 1.00637 1.07166 1.25197 0.94181 0.86813 0.71143 1.90466 1.72318 1.34858 1.33028 1.21058 0.81204 0.91793 0.78081 1.90738 1.67321 1.33581 1.50127 1.50107 1.03663 1.12916 1.69191 1.22910 0.80385 0.91190 1.02212 1.22586 0.91261 0.98898 1.02420 1.23003 0.96681 1.05487 0.88569 1.22074 0.91934 0.97429 1.06320 0.83327 1.19762 0.79996 0.89150 0.76581 1.90628 1.66325 1.39224 1.50905 1.49934 1.03575 1.18633 1.65241 1.23324 0.83127 0.95413 0.98773 1.20235 0.93133 0.92415 0.94082 1.21232 0.92561 1.36883 1.05849 0.91662 1.25719 1.02768 0.94699 0.94564 1.70053 1.36264 1.37547 1.11622 0.85530 0.80049 0.77780 0.78417 1.18937 1.20537 1.21119 1.23228 0.85235 0.92673 1.00632 1.22573 0.81078 0.91056 1.01153 0.91704 0.91978 0.91727 0.92118 0.92143 0.85971 0.85979 0.87432 0.86824 0.88719 0.84015 0.90007 0.91688 0.94325 0.92665 0.92763 0.89901 0.89094 0.90283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.91 71.98 0.71 -0.68 16 2 C -0.12 -1.59 5.22 30.60 0.16 -1.43 16 3 C -0.14 -2.02 5.28 29.85 0.16 -1.86 16 4 C 0.36 7.48 7.21 28.60 0.21 7.69 16 5 O -0.44 -11.26 14.70 -1.52 -0.02 -11.28 16 6 C 0.49 11.84 8.09 87.16 0.71 12.54 16 7 O -0.54 -14.67 17.39 -3.32 -0.06 -14.73 16 8 N -0.62 -14.61 3.61 -849.26 -3.07 -17.67 16 9 C 0.15 2.85 8.85 86.24 0.76 3.61 16 10 C -0.15 -3.36 3.04 -52.35 -0.16 -3.52 16 11 C -0.10 -2.15 10.24 30.47 0.31 -1.84 16 12 C -0.16 -3.96 6.01 -11.71 -0.07 -4.03 16 13 H 0.15 3.15 8.14 -2.39 -0.02 3.13 16 14 C 0.55 19.64 7.86 87.66 0.69 20.33 16 15 O -0.59 -24.06 15.91 -3.04 -0.05 -24.11 16 16 N -0.64 -24.38 3.69 -858.27 -3.17 -27.55 16 17 C 0.12 4.52 7.99 83.18 0.66 5.19 16 18 C 0.02 0.94 3.78 -11.20 -0.04 0.90 16 19 C -0.53 -26.00 8.83 25.60 0.23 -25.77 16 20 H 0.07 3.14 7.81 -2.91 -0.02 3.11 16 21 C 0.02 1.15 5.46 84.65 0.46 1.61 16 22 N -0.92 -48.74 13.26 21.45 0.28 -48.46 16 23 Si 0.96 39.87 29.54 68.60 2.03 41.90 16 24 H -0.27 -10.70 7.11 99.48 0.71 -9.99 16 25 H -0.28 -11.44 7.11 99.48 0.71 -10.73 16 26 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 27 C 0.10 4.22 8.18 83.19 0.68 4.90 16 28 C 0.16 4.22 6.16 86.23 0.53 4.75 16 29 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 33 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 34 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.12 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.11 1.76 8.14 -2.38 -0.02 1.74 16 38 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.08 3.07 8.10 -2.38 -0.02 3.05 16 41 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 42 H 0.04 1.98 8.11 -2.38 -0.02 1.96 16 43 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 44 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 45 H 0.08 3.17 8.10 -2.39 -0.02 3.15 16 46 H 0.09 2.52 8.01 -2.39 -0.02 2.51 16 47 H 0.08 2.29 7.44 -2.39 -0.02 2.27 16 Total: -1.00 -64.01 401.32 2.91 -61.10 By element: Atomic # 1 Polarization: 17.44 SS G_CDS: 0.96 Total: 18.40 kcal Atomic # 6 Polarization: 16.40 SS G_CDS: 6.00 Total: 22.40 kcal Atomic # 7 Polarization: -87.73 SS G_CDS: -5.95 Total: -93.68 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.13 Total: -50.13 kcal Atomic # 14 Polarization: 39.87 SS G_CDS: 2.03 Total: 41.90 kcal Total: -64.01 2.91 -61.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268914124.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.825 kcal (2) G-P(sol) polarization free energy of solvation -64.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds