Wall clock time and date at job start Tue Mar 31 2020 17:33:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47195 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43207 * 179.97438 * 131.63124 * 3 2 1 5 5 O 1.21611 * 119.99756 * 276.29390 * 4 3 2 6 6 N 1.34775 * 119.99923 * 96.29476 * 4 3 2 7 7 C 1.43776 * 120.42263 * 0.02562 * 6 4 3 8 8 C 1.54410 * 115.51090 * 267.79134 * 7 6 4 9 9 O 1.44971 * 110.77999 * 318.56450 * 8 7 6 10 10 C 1.39614 * 115.13524 * 320.80008 * 9 8 7 11 11 C 1.52795 * 106.12590 * 98.16329 * 10 9 8 12 12 C 1.54866 * 108.52209 * 36.81866 * 11 10 9 13 13 C 1.51242 * 104.16478 * 89.11554 * 12 11 10 14 14 O 1.21288 * 124.94814 * 196.62522 * 13 12 11 15 15 N 1.34412 * 110.10257 * 16.64407 * 13 12 11 16 16 C 1.46498 * 124.35276 * 180.40539 * 15 13 12 17 17 C 1.53003 * 109.47041 * 269.97388 * 16 15 13 18 18 C 1.50701 * 109.47099 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00009 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47256 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46988 * 120.00200 * 22 20 18 25 25 H 1.48500 * 109.47186 * 239.99973 * 22 20 18 26 26 C 1.46735 * 111.28745 * 0.38191 * 15 13 12 27 27 C 1.47016 * 113.72939 * 271.87100 * 11 10 9 28 28 H 1.08998 * 109.47560 * 312.07183 * 1 2 3 29 29 H 1.09001 * 109.47015 * 72.07961 * 1 2 3 30 30 H 1.09010 * 109.46814 * 192.07041 * 1 2 3 31 31 H 1.09002 * 108.27387 * 146.22731 * 7 6 4 32 32 H 1.08998 * 108.27637 * 29.35754 * 7 6 4 33 33 H 1.08994 * 109.22136 * 198.22991 * 8 7 6 34 34 H 1.09004 * 109.21458 * 78.89444 * 8 7 6 35 35 H 1.08998 * 110.11111 * 339.00940 * 10 9 8 36 36 H 1.08994 * 110.11201 * 217.31653 * 10 9 8 37 37 H 1.09003 * 110.49290 * 207.78048 * 12 11 10 38 38 H 1.08993 * 110.49149 * 330.44255 * 12 11 10 39 39 H 1.08998 * 109.47630 * 29.97687 * 16 15 13 40 40 H 1.09005 * 109.46718 * 149.97798 * 16 15 13 41 41 H 1.09000 * 109.46724 * 300.00287 * 17 16 15 42 42 H 1.08997 * 109.46804 * 60.00532 * 17 16 15 43 43 H 0.97006 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.24594 * 223.62619 * 26 15 13 45 45 H 1.09000 * 110.24456 * 101.61591 * 26 15 13 46 46 H 1.09001 * 109.87249 * 177.27604 * 27 11 10 47 47 H 1.09000 * 109.87289 * 298.33412 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0016 -0.0005 5 8 4.6865 -0.1134 1.0462 6 7 4.7514 0.1301 -1.1609 7 6 4.0412 0.2672 -2.4034 8 6 3.7598 -1.0505 -3.1575 9 8 4.9132 -1.9274 -3.1087 10 6 6.1486 -1.2902 -3.2389 11 6 6.6866 -1.1135 -1.8197 12 6 6.2950 -2.3587 -0.9865 13 6 7.4422 -3.3213 -1.1981 14 8 7.4049 -4.5099 -0.9592 15 7 8.5091 -2.6677 -1.6890 16 6 9.7881 -3.3022 -2.0174 17 6 10.7004 -3.2762 -0.7895 18 6 12.0163 -3.9284 -1.1274 19 1 12.1852 -4.3216 -2.1191 20 6 13.0051 -4.0220 -0.1711 21 7 12.8000 -3.5418 1.0360 22 14 14.6364 -4.8297 -0.5902 23 1 14.6151 -5.2840 -2.0038 24 1 15.7366 -3.8505 -0.4009 25 1 14.8542 -5.9973 0.3011 26 6 8.2278 -1.2371 -1.8543 27 6 6.2502 0.1323 -1.1724 28 1 -0.3634 0.6886 0.7628 29 1 -0.3633 0.3162 -0.9778 30 1 -0.3633 -1.0051 0.2149 31 1 4.6203 0.9186 -3.0580 32 1 3.0878 0.7549 -2.2002 33 1 3.5241 -0.8255 -4.1976 34 1 2.9082 -1.5521 -2.6978 35 1 6.0205 -0.3181 -3.7150 36 1 6.8295 -1.9085 -3.8236 37 1 6.2044 -2.0991 0.0682 38 1 5.3637 -2.7877 -1.3562 39 1 9.6145 -4.3351 -2.3193 40 1 10.2634 -2.7598 -2.8348 41 1 10.8741 -2.2433 -0.4877 42 1 10.2251 -3.8186 0.0278 43 1 13.4954 -3.6080 1.7090 44 1 8.6132 -0.8850 -2.8111 45 1 8.6703 -0.6688 -1.0361 46 1 6.6285 0.1713 -0.1509 47 1 6.6151 0.9906 -1.7366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269204006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:56 Heat of formation + Delta-G solvation = -44.422552 kcal Electronic energy + Delta-G solvation = -29672.286104 eV Core-core repulsion = 25629.331974 eV Total energy + Delta-G solvation = -4042.954130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51013 -39.67689 -38.46081 -36.22019 -35.59983 -34.73254 -34.17305 -32.65662 -30.33812 -29.66286 -28.87230 -28.13696 -27.06475 -25.93206 -24.45657 -23.46693 -21.70859 -21.31446 -19.87008 -18.95543 -18.53196 -16.95408 -16.84336 -16.52941 -16.44258 -16.02435 -15.51626 -15.33791 -15.12487 -14.87596 -14.74282 -14.40236 -14.19015 -14.11967 -13.93883 -13.76199 -13.26162 -13.07143 -12.96319 -12.70252 -12.52246 -12.20696 -12.03090 -11.94741 -11.38274 -11.28588 -11.14618 -10.94321 -10.84463 -10.78365 -10.68096 -10.64409 -10.42297 -9.95182 -9.89450 -9.79083 -9.30779 -9.10337 -9.02194 -8.34188 -7.96852 -5.98653 -4.02211 1.23676 1.87667 2.49107 3.19025 3.20749 3.32949 3.40057 3.43739 3.47086 3.65586 3.71330 4.24583 4.27837 4.35226 4.45529 4.48570 4.59699 4.76695 4.86698 4.95767 4.96162 4.99316 4.99895 5.12335 5.18912 5.22947 5.31642 5.37341 5.42161 5.49782 5.61563 5.71067 5.77989 5.94863 6.03632 6.06074 6.24868 6.50714 6.83974 6.85830 6.89180 7.02167 7.06966 7.57780 7.72199 7.72965 7.91295 8.01961 8.37765 8.79833 9.05122 9.61678 11.12768 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002598 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.920817 B =10776.695801 C =11173.653616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 C -0.085 4.085 3 C -0.225 4.225 4 C 0.636 3.364 5 O -0.512 6.512 6 N -0.595 5.595 7 C 0.074 3.926 8 C 0.039 3.961 9 O -0.368 6.368 10 C 0.078 3.922 11 C -0.128 4.128 12 C -0.140 4.140 13 C 0.517 3.483 14 O -0.535 6.535 15 N -0.613 5.613 16 C 0.129 3.871 17 C 0.010 3.990 18 C -0.521 4.521 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.892 5.892 22 Si 0.895 3.105 23 H -0.272 1.272 24 H -0.284 1.284 25 H -0.284 1.284 26 C 0.118 3.882 27 C 0.137 3.863 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.086 0.914 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.094 0.906 37 H 0.099 0.901 38 H 0.113 0.887 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.017 0.983 42 H 0.021 0.979 43 H 0.260 0.740 44 H 0.079 0.921 45 H 0.075 0.925 46 H 0.110 0.890 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.607 14.876 -10.640 31.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.087 4.087 3 C -0.228 4.228 4 C 0.425 3.575 5 O -0.388 6.388 6 N -0.328 5.328 7 C -0.052 4.052 8 C -0.038 4.038 9 O -0.286 6.286 10 C 0.000 4.000 11 C -0.130 4.130 12 C -0.180 4.180 13 C 0.304 3.696 14 O -0.412 6.412 15 N -0.346 5.346 16 C 0.009 3.991 17 C -0.028 4.028 18 C -0.560 4.560 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.531 5.531 22 Si 0.723 3.277 23 H -0.197 1.197 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.006 4.006 27 C 0.017 3.983 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.111 0.889 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.080 0.920 36 H 0.112 0.888 37 H 0.117 0.883 38 H 0.131 0.869 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.035 0.965 42 H 0.039 0.961 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.093 0.907 46 H 0.128 0.872 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -25.129 13.981 -9.785 30.376 hybrid contribution 0.983 -0.047 -0.157 0.997 sum -24.146 13.934 -9.942 29.598 Atomic orbital electron populations 1.19138 0.83472 1.04273 1.03988 1.22706 0.93828 0.93873 0.98304 1.20611 0.92455 1.06179 1.03592 1.14754 0.82658 0.76425 0.83678 1.90899 1.68525 1.48315 1.31019 1.47728 1.07042 1.72527 1.05454 1.21797 0.98845 0.98088 0.86421 1.23815 0.89516 0.90940 0.99553 1.87728 1.13522 1.34039 1.93299 1.22131 0.85748 0.98274 0.93829 1.21582 0.96590 0.96625 0.98168 1.22506 0.99825 0.94259 1.01379 1.20710 0.84431 0.87993 0.76416 1.90697 1.83252 1.15176 1.52042 1.48485 1.14062 1.07808 1.64282 1.21787 0.80640 0.96786 0.99860 1.19419 0.93299 0.97499 0.92536 1.21125 0.98611 1.38443 0.97805 0.92446 1.25017 0.98837 0.95553 0.94978 1.69992 1.33833 1.45965 1.03297 0.86496 0.83592 0.79150 0.78508 1.19684 1.21029 1.20973 1.21995 0.92254 0.83836 1.02553 1.21066 0.76898 0.96351 1.03967 0.89079 0.89159 0.88878 0.89891 0.89539 0.91125 0.89228 0.91970 0.88761 0.88297 0.86874 0.91142 0.91735 0.96457 0.96060 0.92994 0.90238 0.90661 0.87218 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.17 10.32 34.37 0.35 0.19 16 2 C -0.08 -0.66 14.13 -37.13 -0.52 -1.18 16 3 C -0.23 -2.36 11.67 -38.83 -0.45 -2.81 16 4 C 0.64 7.87 7.51 -14.33 -0.11 7.77 16 5 O -0.51 -8.37 16.39 5.27 0.09 -8.28 16 6 N -0.60 -5.60 2.41 -178.32 -0.43 -6.03 16 7 C 0.07 0.45 4.83 -4.75 -0.02 0.42 16 8 C 0.04 0.27 7.28 37.90 0.28 0.54 16 9 O -0.37 -3.88 8.06 -31.86 -0.26 -4.13 16 10 C 0.08 0.72 5.47 37.05 0.20 0.93 16 11 C -0.13 -1.42 0.60 -155.63 -0.09 -1.52 16 12 C -0.14 -2.17 5.38 -26.63 -0.14 -2.31 16 13 C 0.52 10.44 7.96 -10.88 -0.09 10.36 16 14 O -0.53 -13.34 17.60 5.55 0.10 -13.24 16 15 N -0.61 -11.36 2.93 -172.34 -0.51 -11.86 16 16 C 0.13 2.78 5.87 -4.04 -0.02 2.76 16 17 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 18 C -0.52 -15.04 9.11 -34.44 -0.31 -15.35 16 19 H 0.06 1.59 7.74 -52.48 -0.41 1.18 16 20 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 21 N -0.89 -27.61 13.29 55.43 0.74 -26.87 16 22 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 26 C 0.12 1.55 6.15 -3.04 -0.02 1.53 16 27 C 0.14 1.30 4.70 -5.02 -0.02 1.27 16 28 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.09 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.08 0.34 7.08 -51.93 -0.37 -0.03 16 32 H 0.09 0.43 6.76 -51.93 -0.35 0.08 16 33 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.39 6.35 -51.93 -0.33 0.06 16 36 H 0.09 0.99 7.77 -51.93 -0.40 0.58 16 37 H 0.10 1.66 7.72 -51.93 -0.40 1.26 16 38 H 0.11 1.78 6.12 -51.93 -0.32 1.47 16 39 H 0.07 1.62 7.93 -51.93 -0.41 1.21 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.08 0.84 7.84 -51.93 -0.41 0.43 16 45 H 0.08 1.00 7.92 -51.93 -0.41 0.59 16 46 H 0.11 1.25 7.02 -51.93 -0.36 0.89 16 47 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -39.10 385.12 -7.82 -46.93 By element: Atomic # 1 Polarization: 3.42 SS G_CDS: -7.11 Total: -3.69 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.22 Total: 4.32 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: -0.20 Total: -44.77 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: -0.07 Total: -25.66 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -39.10 -7.82 -46.93 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.504 kcal (2) G-P(sol) polarization free energy of solvation -39.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds