Wall clock time and date at job start Tue Mar 31 2020 17:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47195 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.43207 * 179.97438 * 131.63124 * 3 2 1 5 5 O 1.21611 * 119.99756 * 276.29390 * 4 3 2 6 6 N 1.34775 * 119.99923 * 96.29476 * 4 3 2 7 7 C 1.43776 * 120.42263 * 0.02562 * 6 4 3 8 8 C 1.54410 * 115.51090 * 267.79134 * 7 6 4 9 9 O 1.44971 * 110.77999 * 318.56450 * 8 7 6 10 10 C 1.39614 * 115.13524 * 320.80008 * 9 8 7 11 11 C 1.52795 * 106.12590 * 98.16329 * 10 9 8 12 12 C 1.54866 * 108.52209 * 36.81866 * 11 10 9 13 13 C 1.51242 * 104.16478 * 89.11554 * 12 11 10 14 14 O 1.21288 * 124.94814 * 196.62522 * 13 12 11 15 15 N 1.34412 * 110.10257 * 16.64407 * 13 12 11 16 16 C 1.46498 * 124.35276 * 180.40539 * 15 13 12 17 17 C 1.53003 * 109.47041 * 269.97388 * 16 15 13 18 18 C 1.50701 * 109.47099 * 180.02562 * 17 16 15 19 19 H 1.08004 * 120.00158 * 0.02562 * 18 17 16 20 20 C 1.37878 * 120.00009 * 179.97438 * 18 17 16 21 21 N 1.31515 * 119.99850 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 119.99941 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47256 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.46988 * 120.00200 * 22 20 18 25 25 H 1.48500 * 109.47186 * 239.99973 * 22 20 18 26 26 C 1.46735 * 111.28745 * 0.38191 * 15 13 12 27 27 C 1.47016 * 113.72939 * 271.87100 * 11 10 9 28 28 H 1.08998 * 109.47560 * 312.07183 * 1 2 3 29 29 H 1.09001 * 109.47015 * 72.07961 * 1 2 3 30 30 H 1.09010 * 109.46814 * 192.07041 * 1 2 3 31 31 H 1.09002 * 108.27387 * 146.22731 * 7 6 4 32 32 H 1.08998 * 108.27637 * 29.35754 * 7 6 4 33 33 H 1.08994 * 109.22136 * 198.22991 * 8 7 6 34 34 H 1.09004 * 109.21458 * 78.89444 * 8 7 6 35 35 H 1.08998 * 110.11111 * 339.00940 * 10 9 8 36 36 H 1.08994 * 110.11201 * 217.31653 * 10 9 8 37 37 H 1.09003 * 110.49290 * 207.78048 * 12 11 10 38 38 H 1.08993 * 110.49149 * 330.44255 * 12 11 10 39 39 H 1.08998 * 109.47630 * 29.97687 * 16 15 13 40 40 H 1.09005 * 109.46718 * 149.97798 * 16 15 13 41 41 H 1.09000 * 109.46724 * 300.00287 * 17 16 15 42 42 H 1.08997 * 109.46804 * 60.00532 * 17 16 15 43 43 H 0.97006 * 119.99992 * 179.97438 * 21 20 18 44 44 H 1.08997 * 110.24594 * 223.62619 * 26 15 13 45 45 H 1.09000 * 110.24456 * 101.61591 * 26 15 13 46 46 H 1.09001 * 109.87249 * 177.27604 * 27 11 10 47 47 H 1.09000 * 109.87289 * 298.33412 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6459 0.0005 0.0000 4 6 4.0780 0.0016 -0.0005 5 8 4.6865 -0.1134 1.0462 6 7 4.7514 0.1301 -1.1609 7 6 4.0412 0.2672 -2.4034 8 6 3.7598 -1.0505 -3.1575 9 8 4.9132 -1.9274 -3.1087 10 6 6.1486 -1.2902 -3.2389 11 6 6.6866 -1.1135 -1.8197 12 6 6.2950 -2.3587 -0.9865 13 6 7.4422 -3.3213 -1.1981 14 8 7.4049 -4.5099 -0.9592 15 7 8.5091 -2.6677 -1.6890 16 6 9.7881 -3.3022 -2.0174 17 6 10.7004 -3.2762 -0.7895 18 6 12.0163 -3.9284 -1.1274 19 1 12.1852 -4.3216 -2.1191 20 6 13.0051 -4.0220 -0.1711 21 7 12.8000 -3.5418 1.0360 22 14 14.6364 -4.8297 -0.5902 23 1 14.6151 -5.2840 -2.0038 24 1 15.7366 -3.8505 -0.4009 25 1 14.8542 -5.9973 0.3011 26 6 8.2278 -1.2371 -1.8543 27 6 6.2502 0.1323 -1.1724 28 1 -0.3634 0.6886 0.7628 29 1 -0.3633 0.3162 -0.9778 30 1 -0.3633 -1.0051 0.2149 31 1 4.6203 0.9186 -3.0580 32 1 3.0878 0.7549 -2.2002 33 1 3.5241 -0.8255 -4.1976 34 1 2.9082 -1.5521 -2.6978 35 1 6.0205 -0.3181 -3.7150 36 1 6.8295 -1.9085 -3.8236 37 1 6.2044 -2.0991 0.0682 38 1 5.3637 -2.7877 -1.3562 39 1 9.6145 -4.3351 -2.3193 40 1 10.2634 -2.7598 -2.8348 41 1 10.8741 -2.2433 -0.4877 42 1 10.2251 -3.8186 0.0278 43 1 13.4954 -3.6080 1.7090 44 1 8.6132 -0.8850 -2.8111 45 1 8.6703 -0.6688 -1.0361 46 1 6.6285 0.1713 -0.1509 47 1 6.6151 0.9906 -1.7366 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269204006.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:33:55 Heat of formation + Delta-G solvation = -72.448636 kcal Electronic energy + Delta-G solvation = -29673.501406 eV Core-core repulsion = 25629.331974 eV Total energy + Delta-G solvation = -4044.169432 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.51320 -40.83586 -39.46399 -37.62174 -36.48805 -36.06680 -35.19247 -34.41178 -31.91833 -30.22207 -29.83626 -29.41527 -27.75542 -27.28706 -26.11504 -24.28289 -23.30626 -22.36274 -20.82003 -20.51625 -19.27799 -18.70161 -17.77419 -17.67299 -17.51099 -17.15257 -16.70213 -16.59004 -16.17871 -16.11451 -15.86971 -15.70229 -14.98371 -14.92056 -14.61858 -14.53790 -14.44992 -14.37829 -14.26704 -14.06930 -13.90896 -13.47965 -13.27122 -12.98506 -12.89063 -12.68352 -12.53648 -12.30700 -12.17870 -11.98136 -11.87129 -11.64542 -11.55374 -11.38851 -11.29546 -11.13642 -10.81012 -10.62665 -10.55801 -9.86104 -9.60887 -8.24706 -6.38064 0.48768 1.22366 1.37859 1.40175 1.52960 1.56155 1.76631 2.15057 2.40883 2.45797 2.83239 3.08838 3.14094 3.32340 3.34948 3.53608 3.77311 3.86362 3.99180 4.14334 4.27039 4.31626 4.39423 4.46270 4.49595 4.53485 4.62602 4.65588 4.69240 4.72050 4.79726 4.81011 4.81531 4.84774 4.88336 4.97870 5.03493 5.07564 5.29868 5.32840 5.44072 5.58066 5.80945 6.12859 6.13845 6.23874 6.27044 6.39409 6.78162 6.90471 7.17074 7.32108 8.87937 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.022540 B = 0.002598 C = 0.002505 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1241.920817 B =10776.695801 C =11173.653616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C -0.045 4.045 3 C -0.289 4.289 4 C 0.629 3.371 5 O -0.573 6.573 6 N -0.587 5.587 7 C 0.067 3.933 8 C 0.037 3.963 9 O -0.399 6.399 10 C 0.081 3.919 11 C -0.105 4.105 12 C -0.126 4.126 13 C 0.501 3.499 14 O -0.596 6.596 15 N -0.612 5.612 16 C 0.143 3.857 17 C 0.020 3.980 18 C -0.541 4.541 19 H 0.070 0.930 20 C -0.004 4.004 21 N -0.936 5.936 22 Si 0.974 3.026 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.284 1.284 26 C 0.110 3.890 27 C 0.135 3.865 28 H 0.107 0.893 29 H 0.119 0.881 30 H 0.105 0.895 31 H 0.118 0.882 32 H 0.100 0.900 33 H 0.104 0.896 34 H 0.081 0.919 35 H 0.109 0.891 36 H 0.085 0.915 37 H 0.078 0.922 38 H 0.111 0.889 39 H 0.051 0.949 40 H 0.102 0.898 41 H 0.003 0.997 42 H -0.034 1.034 43 H 0.264 0.736 44 H 0.123 0.877 45 H 0.072 0.928 46 H 0.081 0.919 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.746 17.223 -14.184 34.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.047 4.047 3 C -0.292 4.292 4 C 0.419 3.581 5 O -0.454 6.454 6 N -0.317 5.317 7 C -0.057 4.057 8 C -0.040 4.040 9 O -0.317 6.317 10 C 0.004 3.996 11 C -0.107 4.107 12 C -0.166 4.166 13 C 0.291 3.709 14 O -0.478 6.478 15 N -0.344 5.344 16 C 0.022 3.978 17 C -0.018 4.018 18 C -0.580 4.580 19 H 0.088 0.912 20 C -0.202 4.202 21 N -0.575 5.575 22 Si 0.798 3.202 23 H -0.179 1.179 24 H -0.198 1.198 25 H -0.210 1.210 26 C -0.013 4.013 27 C 0.014 3.986 28 H 0.125 0.875 29 H 0.137 0.863 30 H 0.124 0.876 31 H 0.136 0.864 32 H 0.119 0.881 33 H 0.122 0.878 34 H 0.100 0.900 35 H 0.127 0.873 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.129 0.871 39 H 0.070 0.930 40 H 0.120 0.880 41 H 0.021 0.979 42 H -0.016 1.016 43 H 0.073 0.927 44 H 0.141 0.859 45 H 0.090 0.910 46 H 0.100 0.900 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -26.296 16.390 -13.402 33.760 hybrid contribution 1.182 -0.770 0.981 1.719 sum -25.114 15.620 -12.421 32.078 Atomic orbital electron populations 1.19526 0.80097 1.05503 1.06170 1.23679 0.94706 0.90824 0.95522 1.20545 0.92590 1.09276 1.06765 1.15151 0.83641 0.75561 0.83715 1.90854 1.69870 1.51470 1.33193 1.47784 1.07000 1.70975 1.05988 1.22094 1.00001 0.98445 0.85149 1.24024 0.87965 0.90516 1.01461 1.87693 1.14705 1.36000 1.93333 1.22188 0.85209 1.00384 0.91846 1.21603 0.94978 0.94964 0.99144 1.22351 0.97723 0.95492 1.01067 1.21586 0.86079 0.87829 0.75436 1.90638 1.84559 1.18047 1.54550 1.48543 1.12496 1.10231 1.63107 1.21410 0.81208 0.97011 0.98156 1.19252 0.93920 0.95443 0.93146 1.21581 0.99306 1.38568 0.98522 0.91162 1.26094 1.03383 0.96038 0.94666 1.70146 1.35439 1.47338 1.04626 0.85269 0.78150 0.77918 0.78898 1.17935 1.19774 1.21010 1.22401 0.93939 0.80206 1.04714 1.21139 0.77283 0.97053 1.03076 0.87480 0.86283 0.87631 0.86375 0.88134 0.87848 0.90030 0.87309 0.89732 0.90404 0.87116 0.93045 0.87980 0.97912 1.01578 0.92742 0.85944 0.90953 0.90007 0.84476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.17 10.32 70.18 0.72 0.55 16 2 C -0.04 -0.62 14.13 31.12 0.44 -0.18 16 3 C -0.29 -6.03 11.67 30.02 0.35 -5.68 16 4 C 0.63 16.17 7.51 85.49 0.64 16.81 16 5 O -0.57 -20.43 16.39 -4.06 -0.07 -20.49 16 6 N -0.59 -10.33 2.41 -836.35 -2.01 -12.34 16 7 C 0.07 0.57 4.83 87.36 0.42 1.00 16 8 C 0.04 0.38 7.28 72.46 0.53 0.91 16 9 O -0.40 -7.60 8.06 -136.91 -1.10 -8.70 16 10 C 0.08 1.25 5.47 71.91 0.39 1.65 16 11 C -0.11 -2.21 0.60 -52.91 -0.03 -2.25 16 12 C -0.13 -4.15 5.38 30.66 0.16 -3.99 16 13 C 0.50 21.59 7.96 87.89 0.70 22.29 16 14 O -0.60 -32.24 17.60 -3.06 -0.05 -32.30 16 15 N -0.61 -23.30 2.93 -817.76 -2.40 -25.69 16 16 C 0.14 6.30 5.87 86.38 0.51 6.81 16 17 C 0.02 1.15 5.30 29.85 0.16 1.31 16 18 C -0.54 -31.83 9.11 25.60 0.23 -31.60 16 19 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 20 C 0.00 -0.24 5.46 84.65 0.46 0.22 16 21 N -0.94 -59.75 13.29 21.45 0.28 -59.47 16 22 Si 0.97 45.57 29.54 68.60 2.03 47.60 16 23 H -0.26 -11.20 7.11 99.48 0.71 -10.49 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 25 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 26 C 0.11 2.74 6.15 86.90 0.53 3.27 16 27 C 0.13 2.35 4.70 83.86 0.39 2.74 16 28 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 30 H 0.11 0.17 8.14 -2.38 -0.02 0.15 16 31 H 0.12 0.25 7.08 -2.39 -0.02 0.23 16 32 H 0.10 0.65 6.76 -2.39 -0.02 0.64 16 33 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 35 H 0.11 0.69 6.35 -2.39 -0.02 0.67 16 36 H 0.08 1.51 7.77 -2.39 -0.02 1.49 16 37 H 0.08 2.90 7.72 -2.39 -0.02 2.88 16 38 H 0.11 3.70 6.12 -2.39 -0.01 3.69 16 39 H 0.05 2.45 7.93 -2.39 -0.02 2.43 16 40 H 0.10 3.73 8.14 -2.38 -0.02 3.71 16 41 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 42 H -0.03 -2.28 8.14 -2.39 -0.02 -2.30 16 43 H 0.26 15.74 8.31 -92.70 -0.77 14.97 16 44 H 0.12 2.08 7.84 -2.39 -0.02 2.06 16 45 H 0.07 1.89 7.92 -2.39 -0.02 1.87 16 46 H 0.08 1.95 7.02 -2.39 -0.02 1.93 16 47 H 0.14 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -95.63 385.12 4.28 -91.35 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: 0.98 Total: 6.17 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 6.62 Total: 13.87 kcal Atomic # 7 Polarization: -93.37 SS G_CDS: -4.13 Total: -97.50 kcal Atomic # 8 Polarization: -60.27 SS G_CDS: -1.22 Total: -61.50 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -95.63 4.28 -91.35 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269204006.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.903 kcal (2) G-P(sol) polarization free energy of solvation -95.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds