Wall clock time and date at job start Tue Mar 31 2020 18:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47087 * 322.86876 * 3 2 1 5 5 C 1.46710 * 124.35695 * 269.72382 * 4 3 2 6 6 C 1.54889 * 105.40704 * 162.60889 * 5 4 3 7 7 C 1.54803 * 101.46975 * 26.02026 * 6 5 4 8 8 C 1.34397 * 124.35114 * 90.02439 * 4 3 2 9 9 O 1.21280 * 124.93795 * 0.47188 * 8 4 3 10 10 C 1.52782 * 108.50579 * 140.39881 * 6 5 4 11 11 O 1.39602 * 106.13599 * 37.10135 * 10 6 5 12 12 C 1.44970 * 115.12767 * 98.16167 * 11 10 6 13 13 C 1.54425 * 110.76725 * 320.80924 * 12 11 10 14 14 N 1.43766 * 115.53489 * 318.54369 * 13 12 11 15 15 C 1.34773 * 120.42578 * 267.84669 * 14 13 12 16 16 O 1.21282 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00324 * 359.97383 * 15 14 13 18 18 C 1.53001 * 109.47307 * 180.02562 * 17 15 14 19 19 C 1.50691 * 109.46991 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99988 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99830 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46574 * 120.00460 * 23 21 19 26 26 H 1.48497 * 109.47120 * 240.00247 * 23 21 19 27 27 C 1.47044 * 111.90238 * 266.71793 * 6 5 4 28 28 H 4.40638 * 5.51406 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 30 30 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 31 31 H 1.08993 * 110.24302 * 281.74987 * 5 4 3 32 32 H 1.09006 * 110.23703 * 43.73143 * 5 4 3 33 33 H 1.09003 * 110.47784 * 216.09587 * 7 6 5 34 34 H 1.08998 * 110.58779 * 93.52665 * 7 6 5 35 35 H 1.08991 * 110.11129 * 156.25673 * 10 6 5 36 36 H 1.08999 * 110.10749 * 277.94516 * 10 6 5 37 37 H 1.08999 * 109.22057 * 200.47548 * 12 11 10 38 38 H 1.09001 * 109.21569 * 81.13355 * 12 11 10 39 39 H 1.08997 * 108.26877 * 196.97736 * 13 12 11 40 40 H 1.08997 * 108.12538 * 80.00386 * 13 12 11 41 41 H 1.08993 * 109.47076 * 300.00421 * 17 15 14 42 42 H 1.09006 * 109.46744 * 60.00118 * 17 15 14 43 43 H 1.09007 * 109.46993 * 299.99999 * 18 17 15 44 44 H 1.08993 * 109.46995 * 59.99712 * 18 17 15 45 45 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.87255 * 53.85334 * 27 6 5 47 47 H 1.09007 * 109.87385 * 174.91419 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1003 0.8338 5 6 3.4162 -0.9899 2.2694 6 6 3.4635 -2.4469 2.7927 7 6 3.8661 -3.2205 1.5137 8 6 3.3886 -2.3399 0.3806 9 8 3.2539 -2.7000 -0.7696 10 6 4.5972 -2.5600 3.8106 11 8 4.6030 -1.3577 4.5201 12 6 3.9224 -1.3946 5.7995 13 6 2.6346 -2.2423 5.7104 14 7 1.8523 -2.0575 4.5185 15 6 0.8566 -1.1497 4.4895 16 8 0.2018 -0.9999 3.4797 17 6 0.5569 -0.3207 5.7118 18 6 -0.6099 0.6233 5.4143 19 6 -0.9092 1.4526 6.6363 20 1 -0.3253 1.3201 7.5352 21 6 -1.9277 2.3814 6.6066 22 7 -2.6384 2.5432 5.5119 23 14 -2.2992 3.4090 8.1218 24 1 -1.3637 3.0374 9.2135 25 1 -2.1329 4.8484 7.7965 26 1 -3.6959 3.1586 8.5594 27 6 2.1587 -2.8872 3.3082 28 1 -1.0499 -0.0001 0.0003 29 1 3.0094 -0.1267 -1.0197 30 1 3.0089 0.9477 0.3994 31 1 4.3755 -0.4976 2.4288 32 1 2.6203 -0.4368 2.7682 33 1 3.3667 -4.1888 1.4806 34 1 4.9476 -3.3484 1.4676 35 1 4.4113 -3.3938 4.4875 36 1 5.5491 -2.6972 3.2976 37 1 3.6632 -0.3787 6.0975 38 1 4.5866 -1.8287 6.5468 39 1 2.0086 -2.0041 6.5703 40 1 2.9155 -3.2935 5.7752 41 1 0.2904 -0.9775 6.5398 42 1 1.4376 0.2629 5.9799 43 1 -0.3437 1.2801 4.5861 44 1 -1.4904 0.0394 5.1464 45 1 -3.3552 3.1964 5.4911 46 1 1.3903 -2.7349 2.5503 47 1 2.2053 -3.9409 3.5834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269990570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:33 Heat of formation + Delta-G solvation = -42.297781 kcal Electronic energy + Delta-G solvation = -30584.729704 eV Core-core repulsion = 26541.867711 eV Total energy + Delta-G solvation = -4042.861993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.54443 -39.61940 -38.36409 -36.52360 -35.24687 -34.70273 -33.52260 -32.30628 -31.00276 -29.71437 -28.07603 -27.44143 -27.20751 -25.73981 -24.90531 -22.84223 -21.39862 -20.35671 -19.75362 -18.70763 -18.14827 -17.43605 -16.91726 -16.60976 -16.33353 -16.17099 -15.58591 -15.39061 -15.31469 -14.85916 -14.80965 -14.45639 -14.03525 -13.87654 -13.67956 -13.58543 -13.18525 -12.91012 -12.78409 -12.46938 -12.23888 -12.17470 -11.88779 -11.83810 -11.66658 -11.24858 -11.14560 -10.98044 -10.83954 -10.61191 -10.43353 -10.04074 -9.96262 -9.91179 -9.73855 -9.65249 -9.20540 -9.03245 -8.88064 -8.59398 -8.36300 -6.00284 -4.04868 2.39419 2.63809 2.90664 3.12909 3.13423 3.29264 3.36780 3.39299 3.53705 3.68099 4.09795 4.18986 4.37223 4.43317 4.57349 4.61931 4.63894 4.76581 4.91857 4.98141 5.18267 5.20964 5.26246 5.33201 5.35083 5.36693 5.43109 5.47205 5.48618 5.53390 5.67752 5.72799 5.82745 5.93131 6.12007 6.14407 6.21584 6.42995 6.50968 6.79030 6.99826 7.06986 7.64744 7.69742 7.80461 7.90575 8.02073 8.09423 8.33128 8.63972 9.03499 9.59092 11.10567 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.003806 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.571849 B = 7354.758443 C = 8819.651410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.230 4.230 3 C 0.243 3.757 4 N -0.611 5.611 5 C 0.125 3.875 6 C -0.118 4.118 7 C -0.144 4.144 8 C 0.519 3.481 9 O -0.536 6.536 10 C 0.081 3.919 11 O -0.375 6.375 12 C 0.038 3.962 13 C 0.076 3.924 14 N -0.618 5.618 15 C 0.512 3.488 16 O -0.519 6.519 17 C -0.128 4.128 18 C 0.039 3.961 19 C -0.527 4.527 20 H 0.056 0.944 21 C 0.059 3.941 22 N -0.888 5.888 23 Si 0.891 3.109 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 C 0.128 3.872 28 H 0.216 0.784 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.103 0.897 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.023 0.977 44 H 0.022 0.978 45 H 0.260 0.740 46 H 0.098 0.902 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.531 -12.149 -2.626 21.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.231 4.231 3 C 0.122 3.878 4 N -0.343 5.343 5 C 0.003 3.997 6 C -0.120 4.120 7 C -0.185 4.185 8 C 0.306 3.694 9 O -0.413 6.413 10 C 0.003 3.997 11 O -0.293 6.293 12 C -0.039 4.039 13 C -0.050 4.050 14 N -0.353 5.353 15 C 0.302 3.698 16 O -0.393 6.393 17 C -0.167 4.167 18 C 0.001 3.999 19 C -0.565 4.565 20 H 0.074 0.926 21 C -0.143 4.143 22 N -0.527 5.527 23 Si 0.719 3.281 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 C 0.006 3.994 28 H 0.233 0.767 29 H 0.118 0.882 30 H 0.118 0.882 31 H 0.102 0.898 32 H 0.104 0.896 33 H 0.122 0.878 34 H 0.128 0.872 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.112 0.888 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.116 0.884 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 16.998 -11.897 -3.952 21.121 hybrid contribution -0.639 0.402 1.132 1.361 sum 16.359 -11.495 -2.820 20.191 Atomic orbital electron populations 1.24971 0.95953 0.97823 0.98215 1.23220 0.94738 1.02582 1.02567 1.18055 0.84133 0.89748 0.95909 1.48310 1.64481 1.10941 1.10604 1.22186 1.02675 0.96139 0.78692 1.21648 0.97911 0.96356 0.96126 1.22528 1.03733 0.99624 0.92575 1.20831 0.76529 0.82872 0.89119 1.90717 1.53902 1.76829 1.19825 1.22137 0.96519 0.88256 0.92801 1.87655 1.76182 1.32874 1.32634 1.23933 0.92330 1.02615 0.85053 1.21703 0.93748 1.00044 0.89473 1.48167 1.34122 1.40263 1.12798 1.21648 0.78099 0.78741 0.91291 1.90706 1.48604 1.65959 1.33983 1.21912 1.02928 0.98221 0.93682 1.18885 0.91105 0.92931 0.96938 1.21227 1.16593 1.20333 0.98366 0.92620 1.25013 0.96122 0.97165 0.95966 1.70004 1.20961 1.34883 1.26849 0.86561 0.78167 0.80219 0.83166 1.19742 1.21002 1.21017 1.20871 0.95455 0.94122 0.88915 0.76714 0.88158 0.88190 0.89805 0.89598 0.87816 0.87212 0.91879 0.89125 0.88497 0.91362 0.88801 0.91067 0.90353 0.90357 0.95897 0.95938 0.92998 0.88366 0.90528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 19.25 29.55 0.57 -1.98 16 2 C -0.23 -3.81 13.68 -37.13 -0.51 -4.32 16 3 C 0.24 3.27 6.41 -6.83 -0.04 3.22 16 4 N -0.61 -8.18 2.89 -175.56 -0.51 -8.69 16 5 C 0.13 1.54 5.51 -2.93 -0.02 1.52 16 6 C -0.12 -1.14 0.57 -155.53 -0.09 -1.23 16 7 C -0.14 -1.30 5.92 -26.67 -0.16 -1.46 16 8 C 0.52 7.09 8.02 -10.89 -0.09 7.00 16 9 O -0.54 -9.26 17.59 5.56 0.10 -9.16 16 10 C 0.08 0.59 5.56 37.05 0.21 0.80 16 11 O -0.38 -3.57 8.58 -31.82 -0.27 -3.84 16 12 C 0.04 0.32 7.28 37.90 0.28 0.59 16 13 C 0.08 0.69 4.83 -4.75 -0.02 0.67 16 14 N -0.62 -7.90 2.33 -175.42 -0.41 -8.31 16 15 C 0.51 9.17 6.61 -10.99 -0.07 9.10 16 16 O -0.52 -11.48 15.16 5.56 0.08 -11.39 16 17 C -0.13 -2.43 4.18 -27.88 -0.12 -2.55 16 18 C 0.04 1.01 4.26 -27.89 -0.12 0.89 16 19 C -0.53 -14.49 9.11 -34.44 -0.31 -14.80 16 20 H 0.06 1.44 7.74 -52.48 -0.41 1.04 16 21 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 23 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 26 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 27 C 0.13 1.46 4.75 -5.00 -0.02 1.43 16 28 H 0.22 3.14 7.80 -54.10 -0.42 2.72 16 29 H 0.10 1.25 7.92 -51.93 -0.41 0.83 16 30 H 0.10 1.14 8.14 -51.93 -0.42 0.71 16 31 H 0.08 0.94 7.14 -51.93 -0.37 0.57 16 32 H 0.09 1.36 6.19 -51.93 -0.32 1.03 16 33 H 0.10 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.11 0.72 7.27 -51.93 -0.38 0.35 16 35 H 0.06 0.36 6.35 -51.93 -0.33 0.03 16 36 H 0.09 0.52 7.29 -51.93 -0.38 0.14 16 37 H 0.10 0.90 7.84 -51.93 -0.41 0.50 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.09 0.86 6.31 -51.93 -0.33 0.53 16 40 H 0.07 0.48 7.06 -51.93 -0.37 0.11 16 41 H 0.08 1.36 7.38 -51.93 -0.38 0.97 16 42 H 0.08 1.36 7.81 -51.93 -0.41 0.95 16 43 H 0.02 0.66 8.10 -51.93 -0.42 0.23 16 44 H 0.02 0.64 8.10 -51.93 -0.42 0.22 16 45 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 46 H 0.10 1.48 7.10 -51.93 -0.37 1.11 16 47 H 0.08 0.67 8.14 -51.92 -0.42 0.24 16 LS Contribution 380.14 15.07 5.73 5.73 Total: -1.00 -36.77 380.14 -7.11 -43.88 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.93 Total: 1.27 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -0.62 Total: 0.47 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.18 Total: -43.16 kcal Atomic # 8 Polarization: -24.30 SS G_CDS: -0.09 Total: -24.39 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.77 -7.11 -43.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.583 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds