Wall clock time and date at job start Tue Mar 31 2020 18:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47087 * 322.86876 * 3 2 1 5 5 C 1.46710 * 124.35695 * 269.72382 * 4 3 2 6 6 C 1.54889 * 105.40704 * 162.60889 * 5 4 3 7 7 C 1.54803 * 101.46975 * 26.02026 * 6 5 4 8 8 C 1.34397 * 124.35114 * 90.02439 * 4 3 2 9 9 O 1.21280 * 124.93795 * 0.47188 * 8 4 3 10 10 C 1.52782 * 108.50579 * 140.39881 * 6 5 4 11 11 O 1.39602 * 106.13599 * 37.10135 * 10 6 5 12 12 C 1.44970 * 115.12767 * 98.16167 * 11 10 6 13 13 C 1.54425 * 110.76725 * 320.80924 * 12 11 10 14 14 N 1.43766 * 115.53489 * 318.54369 * 13 12 11 15 15 C 1.34773 * 120.42578 * 267.84669 * 14 13 12 16 16 O 1.21282 * 119.99766 * 179.97438 * 15 14 13 17 17 C 1.50701 * 120.00324 * 359.97383 * 15 14 13 18 18 C 1.53001 * 109.47307 * 180.02562 * 17 15 14 19 19 C 1.50691 * 109.46991 * 180.02562 * 18 17 15 20 20 H 1.08004 * 120.00360 * 0.02562 * 19 18 17 21 21 C 1.37878 * 119.99988 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99830 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00062 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47095 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.46574 * 120.00460 * 23 21 19 26 26 H 1.48497 * 109.47120 * 240.00247 * 23 21 19 27 27 C 1.47044 * 111.90238 * 266.71793 * 6 5 4 28 28 H 4.40638 * 5.51406 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47132 * 82.87190 * 3 2 1 30 30 H 1.09001 * 109.47213 * 202.87220 * 3 2 1 31 31 H 1.08993 * 110.24302 * 281.74987 * 5 4 3 32 32 H 1.09006 * 110.23703 * 43.73143 * 5 4 3 33 33 H 1.09003 * 110.47784 * 216.09587 * 7 6 5 34 34 H 1.08998 * 110.58779 * 93.52665 * 7 6 5 35 35 H 1.08991 * 110.11129 * 156.25673 * 10 6 5 36 36 H 1.08999 * 110.10749 * 277.94516 * 10 6 5 37 37 H 1.08999 * 109.22057 * 200.47548 * 12 11 10 38 38 H 1.09001 * 109.21569 * 81.13355 * 12 11 10 39 39 H 1.08997 * 108.26877 * 196.97736 * 13 12 11 40 40 H 1.08997 * 108.12538 * 80.00386 * 13 12 11 41 41 H 1.08993 * 109.47076 * 300.00421 * 17 15 14 42 42 H 1.09006 * 109.46744 * 60.00118 * 17 15 14 43 43 H 1.09007 * 109.46993 * 299.99999 * 18 17 15 44 44 H 1.08993 * 109.46995 * 59.99712 * 18 17 15 45 45 H 0.96997 * 119.99980 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.87255 * 53.85334 * 27 6 5 47 47 H 1.09007 * 109.87385 * 174.91419 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1348 -1.1003 0.8338 5 6 3.4162 -0.9899 2.2694 6 6 3.4635 -2.4469 2.7927 7 6 3.8661 -3.2205 1.5137 8 6 3.3886 -2.3399 0.3806 9 8 3.2539 -2.7000 -0.7696 10 6 4.5972 -2.5600 3.8106 11 8 4.6030 -1.3577 4.5201 12 6 3.9224 -1.3946 5.7995 13 6 2.6346 -2.2423 5.7104 14 7 1.8523 -2.0575 4.5185 15 6 0.8566 -1.1497 4.4895 16 8 0.2018 -0.9999 3.4797 17 6 0.5569 -0.3207 5.7118 18 6 -0.6099 0.6233 5.4143 19 6 -0.9092 1.4526 6.6363 20 1 -0.3253 1.3201 7.5352 21 6 -1.9277 2.3814 6.6066 22 7 -2.6384 2.5432 5.5119 23 14 -2.2992 3.4090 8.1218 24 1 -1.3637 3.0374 9.2135 25 1 -2.1329 4.8484 7.7965 26 1 -3.6959 3.1586 8.5594 27 6 2.1587 -2.8872 3.3082 28 1 -1.0499 -0.0001 0.0003 29 1 3.0094 -0.1267 -1.0197 30 1 3.0089 0.9477 0.3994 31 1 4.3755 -0.4976 2.4288 32 1 2.6203 -0.4368 2.7682 33 1 3.3667 -4.1888 1.4806 34 1 4.9476 -3.3484 1.4676 35 1 4.4113 -3.3938 4.4875 36 1 5.5491 -2.6972 3.2976 37 1 3.6632 -0.3787 6.0975 38 1 4.5866 -1.8287 6.5468 39 1 2.0086 -2.0041 6.5703 40 1 2.9155 -3.2935 5.7752 41 1 0.2904 -0.9775 6.5398 42 1 1.4376 0.2629 5.9799 43 1 -0.3437 1.2801 4.5861 44 1 -1.4904 0.0394 5.1464 45 1 -3.3552 3.1964 5.4911 46 1 1.3903 -2.7349 2.5503 47 1 2.2053 -3.9409 3.5834 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269990570.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:14:32 Heat of formation + Delta-G solvation = -68.115238 kcal Electronic energy + Delta-G solvation = -30585.849233 eV Core-core repulsion = 26541.867711 eV Total energy + Delta-G solvation = -4043.981521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.47050 -40.77919 -39.43093 -37.55106 -36.30714 -35.80064 -35.52886 -33.54852 -32.84124 -30.57396 -29.18634 -28.43564 -28.23903 -27.13378 -26.09624 -24.02750 -22.91982 -21.32028 -20.69264 -19.92938 -19.35656 -18.89303 -18.02579 -17.77633 -17.53578 -17.24479 -16.64074 -16.49092 -16.45049 -16.35979 -15.95835 -15.69592 -15.12470 -14.96392 -14.80537 -14.55029 -14.45684 -14.19091 -14.06100 -14.01542 -13.47063 -13.28885 -13.04375 -12.92176 -12.80757 -12.66536 -12.44189 -12.33685 -12.08577 -11.90258 -11.71983 -11.58549 -11.48364 -11.28443 -11.24140 -10.93417 -10.71948 -10.58577 -10.35824 -9.97888 -9.62477 -8.18474 -6.32479 1.26079 1.41693 1.42772 1.55774 1.55921 1.69980 1.77651 1.92828 2.38860 2.42398 2.97522 3.15071 3.25830 3.38750 3.40883 3.63492 3.77556 3.86834 4.03608 4.09447 4.15633 4.21425 4.32151 4.39932 4.48083 4.48253 4.59450 4.63390 4.65377 4.70862 4.74531 4.80696 4.87292 4.92453 4.93868 5.02663 5.10326 5.14768 5.37919 5.47615 5.56534 5.62159 5.84591 6.05373 6.16942 6.35855 6.53793 6.55568 6.86548 7.03364 7.30390 7.38369 8.94247 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.013017 B = 0.003806 C = 0.003174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.571849 B = 7354.758443 C = 8819.651410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.237 4.237 3 C 0.234 3.766 4 N -0.615 5.615 5 C 0.127 3.873 6 C -0.110 4.110 7 C -0.128 4.128 8 C 0.506 3.494 9 O -0.580 6.580 10 C 0.084 3.916 11 O -0.394 6.394 12 C 0.040 3.960 13 C 0.062 3.938 14 N -0.603 5.603 15 C 0.510 3.490 16 O -0.577 6.577 17 C -0.114 4.114 18 C 0.048 3.952 19 C -0.539 4.539 20 H 0.077 0.923 21 C -0.006 4.006 22 N -0.938 5.938 23 Si 0.971 3.029 24 H -0.250 1.250 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.127 3.873 28 H 0.225 0.775 29 H 0.110 0.890 30 H 0.119 0.881 31 H 0.098 0.902 32 H 0.045 0.955 33 H 0.120 0.880 34 H 0.148 0.852 35 H 0.093 0.907 36 H 0.118 0.882 37 H 0.079 0.921 38 H 0.104 0.896 39 H 0.095 0.905 40 H 0.112 0.888 41 H 0.103 0.897 42 H 0.099 0.901 43 H -0.024 1.024 44 H -0.022 1.022 45 H 0.261 0.739 46 H 0.053 0.947 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.078 -14.134 0.571 25.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.238 4.238 3 C 0.113 3.887 4 N -0.346 5.346 5 C 0.005 3.995 6 C -0.112 4.112 7 C -0.168 4.168 8 C 0.296 3.704 9 O -0.461 6.461 10 C 0.006 3.994 11 O -0.313 6.313 12 C -0.037 4.037 13 C -0.061 4.061 14 N -0.336 5.336 15 C 0.300 3.700 16 O -0.455 6.455 17 C -0.154 4.154 18 C 0.010 3.990 19 C -0.577 4.577 20 H 0.095 0.905 21 C -0.203 4.203 22 N -0.578 5.578 23 Si 0.795 3.205 24 H -0.173 1.173 25 H -0.208 1.208 26 H -0.208 1.208 27 C 0.006 3.994 28 H 0.242 0.758 29 H 0.128 0.872 30 H 0.137 0.863 31 H 0.116 0.884 32 H 0.063 0.937 33 H 0.139 0.861 34 H 0.166 0.834 35 H 0.111 0.889 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.122 0.878 39 H 0.113 0.887 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.117 0.883 43 H -0.005 1.005 44 H -0.004 1.004 45 H 0.070 0.930 46 H 0.071 0.929 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 20.615 -13.918 -0.692 24.884 hybrid contribution -1.743 1.010 0.099 2.017 sum 18.873 -12.908 -0.593 22.872 Atomic orbital electron populations 1.25520 0.96975 0.98836 0.99189 1.24102 0.96062 1.01804 1.01813 1.18314 0.82314 0.91126 0.96975 1.48484 1.63914 1.11060 1.11186 1.22210 1.01566 0.98070 0.77665 1.21659 0.98136 0.94099 0.97340 1.22582 1.05994 0.98806 0.89384 1.21736 0.75703 0.83247 0.89683 1.90688 1.55873 1.77506 1.21984 1.22344 0.96194 0.88448 0.92390 1.87650 1.76005 1.34382 1.33219 1.23981 0.92262 1.01854 0.85620 1.22110 0.93797 1.02827 0.87398 1.48018 1.32675 1.38267 1.14628 1.21355 0.79116 0.79548 0.89933 1.90695 1.51239 1.68002 1.35599 1.21631 1.00757 0.97810 0.95183 1.18629 0.92193 0.92994 0.95182 1.21730 1.16622 1.20159 0.99194 0.90473 1.26118 0.95958 0.98775 0.99480 1.70192 1.21849 1.35987 1.29791 0.85315 0.78261 0.77850 0.79082 1.17279 1.20834 1.20768 1.21031 0.95095 0.95908 0.87357 0.75815 0.87180 0.86320 0.88391 0.93684 0.86138 0.83423 0.88899 0.86447 0.90227 0.87777 0.88667 0.86992 0.87940 0.88306 1.00541 1.00363 0.92994 0.92854 0.86398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.01 19.25 74.32 1.43 -5.58 16 2 C -0.24 -8.54 13.68 31.12 0.43 -8.12 16 3 C 0.23 6.64 6.41 84.57 0.54 7.18 16 4 N -0.61 -16.66 2.89 -827.94 -2.39 -19.05 16 5 C 0.13 3.03 5.51 86.98 0.48 3.51 16 6 C -0.11 -1.79 0.57 -52.84 -0.03 -1.82 16 7 C -0.13 -1.87 5.92 30.63 0.18 -1.69 16 8 C 0.51 13.52 8.02 87.89 0.70 14.23 16 9 O -0.58 -20.25 17.59 -3.03 -0.05 -20.30 16 10 C 0.08 0.76 5.56 71.91 0.40 1.16 16 11 O -0.39 -5.82 8.58 -136.78 -1.17 -7.00 16 12 C 0.04 0.49 7.28 72.47 0.53 1.02 16 13 C 0.06 0.87 4.83 87.37 0.42 1.30 16 14 N -0.60 -14.42 2.33 -827.29 -1.92 -16.35 16 15 C 0.51 18.84 6.61 87.66 0.58 19.42 16 16 O -0.58 -27.62 15.16 -3.04 -0.05 -27.67 16 17 C -0.11 -4.40 4.18 29.85 0.12 -4.28 16 18 C 0.05 2.62 4.26 29.85 0.13 2.75 16 19 C -0.54 -30.14 9.11 25.60 0.23 -29.91 16 20 H 0.08 3.89 7.74 -2.91 -0.02 3.87 16 21 C -0.01 -0.34 5.46 84.65 0.46 0.12 16 22 N -0.94 -59.44 13.29 21.45 0.28 -59.15 16 23 Si 0.97 43.76 29.54 68.60 2.03 45.79 16 24 H -0.25 -10.23 7.11 99.48 0.71 -9.52 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 27 C 0.13 2.64 4.75 83.87 0.40 3.04 16 28 H 0.23 7.47 7.80 -4.42 -0.03 7.44 16 29 H 0.11 2.87 7.92 -2.39 -0.02 2.85 16 30 H 0.12 2.84 8.14 -2.39 -0.02 2.82 16 31 H 0.10 2.04 7.14 -2.39 -0.02 2.02 16 32 H 0.04 1.48 6.19 -2.38 -0.01 1.46 16 33 H 0.12 1.45 7.91 -2.39 -0.02 1.43 16 34 H 0.15 1.13 7.27 -2.39 -0.02 1.11 16 35 H 0.09 0.36 6.35 -2.39 -0.02 0.34 16 36 H 0.12 0.54 7.29 -2.39 -0.02 0.53 16 37 H 0.08 1.26 7.84 -2.39 -0.02 1.24 16 38 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 39 H 0.10 1.37 6.31 -2.39 -0.02 1.35 16 40 H 0.11 0.76 7.06 -2.39 -0.02 0.74 16 41 H 0.10 3.42 7.38 -2.39 -0.02 3.41 16 42 H 0.10 3.37 7.81 -2.38 -0.02 3.35 16 43 H -0.02 -1.51 8.10 -2.38 -0.02 -1.53 16 44 H -0.02 -1.39 8.10 -2.39 -0.02 -1.41 16 45 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.05 1.64 7.10 -2.39 -0.02 1.62 16 47 H 0.12 1.51 8.14 -2.38 -0.02 1.49 16 Total: -1.00 -89.82 380.14 4.70 -85.11 By element: Atomic # 1 Polarization: 15.32 SS G_CDS: 0.97 Total: 16.30 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 7.01 Total: 2.32 kcal Atomic # 7 Polarization: -90.52 SS G_CDS: -4.03 Total: -94.55 kcal Atomic # 8 Polarization: -53.70 SS G_CDS: -1.27 Total: -54.97 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -89.82 4.70 -85.11 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269990570.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.999 kcal (2) G-P(sol) polarization free energy of solvation -89.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds