Wall clock time and date at job start Tue Mar 31 2020 18:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 119.99555 * 2 1 4 4 N 1.46505 * 109.46807 * 124.99912 * 3 2 1 5 5 C 1.33959 * 122.78216 * 90.02864 * 4 3 2 6 6 O 1.21229 * 125.41246 * 0.02562 * 5 4 3 7 7 C 1.51453 * 109.17284 * 179.97438 * 5 4 3 8 8 C 1.53737 * 103.50512 * 359.91238 * 7 5 4 9 9 C 1.52440 * 110.36776 * 118.85219 * 8 7 5 10 10 C 1.53139 * 109.61020 * 182.31513 * 9 8 7 11 11 C 1.53178 * 109.29082 * 299.56611 * 10 9 8 12 12 N 1.46935 * 108.90411 * 55.08901 * 11 10 9 13 13 C 1.34776 * 120.68609 * 125.98147 * 12 11 10 14 14 O 1.21283 * 119.99669 * 179.97438 * 13 12 11 15 15 C 1.50697 * 120.00054 * 359.97016 * 13 12 11 16 16 C 1.53006 * 109.47100 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47025 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47044 * 89.99900 * 21 19 17 23 23 H 1.48491 * 109.47075 * 210.00395 * 21 19 17 24 24 H 1.48502 * 109.46804 * 330.00321 * 21 19 17 25 25 C 1.47047 * 118.62524 * 305.95175 * 12 11 10 26 26 C 1.34047 * 122.78571 * 270.02063 * 4 3 2 27 27 O 1.21226 * 125.50173 * 0.02562 * 26 4 3 28 28 H 1.08001 * 120.00656 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99428 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00656 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47256 * 5.00028 * 3 2 1 32 32 H 1.08996 * 109.47082 * 244.99768 * 3 2 1 33 33 H 1.09002 * 110.64420 * 118.46398 * 7 5 4 34 34 H 1.08996 * 110.64389 * 241.36871 * 7 5 4 35 35 H 1.09000 * 109.45187 * 302.36487 * 9 8 7 36 36 H 1.09001 * 109.44256 * 62.27350 * 9 8 7 37 37 H 1.08997 * 109.49595 * 179.62059 * 10 9 8 38 38 H 1.09002 * 109.52935 * 59.53076 * 10 9 8 39 39 H 1.08997 * 109.56312 * 295.25934 * 11 10 9 40 40 H 1.08996 * 109.65775 * 174.96935 * 11 10 9 41 41 H 1.09005 * 109.47299 * 299.99976 * 15 13 12 42 42 H 1.08997 * 109.47011 * 60.00326 * 15 13 12 43 43 H 1.09005 * 109.46351 * 299.99732 * 16 15 13 44 44 H 1.08993 * 109.47116 * 59.99882 * 16 15 13 45 45 H 0.96997 * 119.99995 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58539 * 292.93733 * 25 12 11 47 47 H 1.09005 * 109.69638 * 172.59757 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.2533 0.8846 1.0456 6 8 4.7662 0.4163 0.0519 7 6 4.9353 1.0579 2.3867 8 6 3.8435 1.6891 3.2658 9 6 3.5198 0.7791 4.4451 10 6 2.3913 1.3964 5.2762 11 6 2.8408 2.7622 5.8044 12 7 3.2668 3.5943 4.6708 13 6 2.7342 4.8171 4.4767 14 8 3.0953 5.4936 3.5371 15 6 1.6899 5.3436 5.4271 16 6 1.2550 6.7418 4.9832 17 6 0.2111 7.2686 5.9341 18 1 -0.1102 6.6663 6.7709 19 6 -0.3336 8.5195 5.7356 20 7 0.0574 9.2528 4.7162 21 14 -1.6280 9.1723 6.9137 22 1 -0.9646 9.9093 8.0190 23 1 -2.5422 10.0888 6.1862 24 1 -2.4060 8.0375 7.4724 25 6 4.2866 3.0657 3.7528 26 6 2.6549 1.8064 2.3386 27 8 1.5709 2.2587 2.6384 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3584 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 5.2424 0.0926 2.7892 34 1 5.7918 1.7262 2.2988 35 1 3.2059 -0.1969 4.0750 36 1 4.4070 0.6624 5.0676 37 1 2.1569 0.7410 6.1150 38 1 1.5058 1.5207 4.6529 39 1 3.6744 2.6305 6.4941 40 1 2.0122 3.2462 6.3213 41 1 0.8273 4.6773 5.4246 42 1 2.1068 5.3946 6.4329 43 1 2.1175 7.4083 4.9855 44 1 0.8380 6.6904 3.9775 45 1 -0.3261 10.1327 4.5764 46 1 5.2391 2.9791 4.2756 47 1 4.3973 3.7366 2.9008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269991453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:22 Heat of formation + Delta-G solvation = -81.925412 kcal Electronic energy + Delta-G solvation = -30045.642230 eV Core-core repulsion = 26001.061855 eV Total energy + Delta-G solvation = -4044.580376 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.52602 -39.79133 -38.67564 -37.27548 -36.21208 -35.03614 -33.49246 -33.08839 -31.99568 -30.94931 -28.61932 -26.78545 -26.31282 -25.01585 -24.32919 -22.37921 -21.85114 -21.42762 -20.23157 -19.33092 -18.30853 -17.52125 -17.05423 -16.91243 -16.50079 -15.90437 -15.58762 -15.31647 -15.09658 -14.90292 -14.66365 -14.42248 -14.36435 -14.21490 -13.83337 -13.61239 -13.30506 -13.17486 -12.79132 -12.76302 -12.48665 -12.27197 -12.08403 -12.02674 -11.74669 -11.35093 -11.32306 -11.05973 -10.96739 -10.90763 -10.60675 -10.55205 -10.07918 -9.98418 -9.91894 -9.74873 -9.57878 -9.15453 -8.97358 -8.46997 -8.28547 -5.93107 -3.97249 1.31393 1.69607 2.44568 2.52270 3.12576 3.26675 3.35043 3.41121 3.43965 3.69998 3.86950 4.03187 4.21053 4.49432 4.53308 4.60879 4.70433 4.77244 4.85024 4.97446 5.00575 5.13195 5.17964 5.23352 5.31169 5.37134 5.41832 5.42335 5.45138 5.51232 5.55952 5.63339 5.73158 5.85062 6.15867 6.22437 6.24052 6.28346 6.30816 6.60386 6.65825 6.93308 7.10270 7.59783 7.72763 7.77662 7.90475 8.10617 8.41697 8.75236 9.11095 9.65992 11.17927 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003080 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.784382 B = 9088.718951 C = 9742.708598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.125 3.875 4 N -0.571 5.571 5 C 0.530 3.470 6 O -0.486 6.486 7 C -0.149 4.149 8 C -0.110 4.110 9 C -0.096 4.096 10 C -0.147 4.147 11 C 0.112 3.888 12 N -0.621 5.621 13 C 0.521 3.479 14 O -0.535 6.535 15 C -0.126 4.126 16 C 0.038 3.962 17 C -0.525 4.525 18 H 0.055 0.945 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.892 3.108 22 H -0.281 1.281 23 H -0.287 1.287 24 H -0.274 1.274 25 C 0.132 3.868 26 C 0.535 3.465 27 O -0.447 6.447 28 H 0.104 0.896 29 H 0.103 0.897 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.069 0.931 36 H 0.084 0.916 37 H 0.079 0.921 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.078 0.922 43 H 0.022 0.978 44 H 0.023 0.977 45 H 0.260 0.740 46 H 0.082 0.918 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -23.920 -2.750 25.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.201 4.201 3 C 0.005 3.995 4 N -0.315 5.315 5 C 0.319 3.681 6 O -0.359 6.359 7 C -0.189 4.189 8 C -0.114 4.114 9 C -0.133 4.133 10 C -0.185 4.185 11 C -0.011 4.011 12 N -0.356 5.356 13 C 0.312 3.688 14 O -0.410 6.410 15 C -0.166 4.166 16 C 0.000 4.000 17 C -0.563 4.563 18 H 0.074 0.926 19 C -0.144 4.144 20 N -0.529 5.529 21 Si 0.720 3.280 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.199 1.199 25 C 0.008 3.992 26 C 0.322 3.678 27 O -0.314 6.314 28 H 0.122 0.878 29 H 0.121 0.879 30 H 0.129 0.871 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.142 0.858 34 H 0.143 0.857 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.098 0.902 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.113 0.887 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.041 0.959 44 H 0.041 0.959 45 H 0.070 0.930 46 H 0.101 0.899 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.946 -23.314 -3.736 25.249 hybrid contribution -0.765 0.227 0.468 0.925 sum 8.181 -23.087 -3.268 24.710 Atomic orbital electron populations 1.23995 0.95645 1.02610 0.97291 1.23058 0.96306 0.98011 1.02762 1.20866 0.92448 0.97357 0.88825 1.46873 1.14295 1.56689 1.13600 1.20830 0.81238 0.75337 0.90714 1.90767 1.68282 1.41546 1.35265 1.22585 0.99302 1.05172 0.91882 1.21618 0.93531 0.99819 0.96437 1.21392 1.00419 0.96973 0.94552 1.22100 0.99349 0.96548 1.00552 1.21662 1.00585 0.90843 0.88028 1.48212 1.41742 1.17366 1.28307 1.21551 0.81715 0.79339 0.86215 1.90648 1.61409 1.57009 1.31949 1.21863 0.95494 1.01943 0.97323 1.18899 0.96398 0.87761 0.96922 1.21214 1.22406 1.01255 1.11469 0.92626 1.25021 0.96917 0.96993 0.95446 1.70002 1.43098 1.11003 1.28776 0.86598 0.81603 0.78849 0.80948 1.20694 1.21251 1.19875 1.21267 0.91575 0.90771 0.95548 1.20578 0.89489 0.75720 0.82020 1.90785 1.24088 1.39329 1.77217 0.87818 0.87878 0.87054 0.88245 0.88120 0.85791 0.85728 0.91212 0.89704 0.90248 0.89556 0.91593 0.88723 0.90109 0.90329 0.95922 0.95895 0.92997 0.89949 0.88671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 14.32 29.02 0.42 -0.98 16 2 C -0.18 -1.74 9.85 -36.02 -0.35 -2.10 16 3 C 0.13 1.34 6.00 -5.19 -0.03 1.31 16 4 N -0.57 -6.47 2.54 -116.54 -0.30 -6.76 16 5 C 0.53 5.47 8.09 -10.98 -0.09 5.38 16 6 O -0.49 -6.24 17.48 5.60 0.10 -6.14 16 7 C -0.15 -1.01 6.29 -27.13 -0.17 -1.18 16 8 C -0.11 -1.00 0.69 -155.53 -0.11 -1.11 16 9 C -0.10 -0.67 4.52 -26.95 -0.12 -0.80 16 10 C -0.15 -1.32 5.81 -26.57 -0.15 -1.48 16 11 C 0.11 1.19 6.33 -3.71 -0.02 1.17 16 12 N -0.62 -8.84 2.55 -173.04 -0.44 -9.28 16 13 C 0.52 10.31 7.70 -10.99 -0.08 10.22 16 14 O -0.53 -12.79 15.41 5.55 0.09 -12.70 16 15 C -0.13 -2.65 3.99 -27.88 -0.11 -2.76 16 16 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 17 C -0.53 -15.08 9.11 -34.44 -0.31 -15.40 16 18 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 20 N -0.89 -27.76 13.29 55.43 0.74 -27.02 16 21 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 25 C 0.13 1.50 4.94 -3.95 -0.02 1.48 16 26 C 0.53 6.73 6.52 -11.07 -0.07 6.66 16 27 O -0.45 -7.23 15.00 5.60 0.08 -7.15 16 28 H 0.10 0.95 7.84 -52.49 -0.41 0.54 16 29 H 0.10 0.74 8.06 -52.48 -0.42 0.32 16 30 H 0.11 1.01 8.06 -52.49 -0.42 0.58 16 31 H 0.10 1.15 7.49 -51.93 -0.39 0.76 16 32 H 0.10 1.00 7.83 -51.93 -0.41 0.60 16 33 H 0.12 0.51 7.72 -51.93 -0.40 0.11 16 34 H 0.12 0.66 7.72 -51.93 -0.40 0.26 16 35 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.04 5.97 -51.93 -0.31 0.73 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.09 1.08 5.93 -51.93 -0.31 0.77 16 41 H 0.08 1.60 7.71 -51.93 -0.40 1.20 16 42 H 0.08 1.47 7.93 -51.93 -0.41 1.06 16 43 H 0.02 0.67 8.10 -51.93 -0.42 0.25 16 44 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 45 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.32 7.02 -51.93 -0.36 0.95 16 LS Contribution 383.23 15.07 5.78 5.78 Total: -1.00 -37.67 383.23 -7.58 -45.24 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.15 Total: -1.74 kcal Atomic # 6 Polarization: 4.41 SS G_CDS: -1.45 Total: 2.95 kcal Atomic # 7 Polarization: -43.06 SS G_CDS: 0.00 Total: -43.06 kcal Atomic # 8 Polarization: -26.27 SS G_CDS: 0.27 Total: -26.00 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -37.67 -7.58 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.681 kcal (2) G-P(sol) polarization free energy of solvation -37.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds