Wall clock time and date at job start Tue Mar 31 2020 18:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30994 * 1 3 3 C 1.50707 * 119.99555 * 2 1 4 4 N 1.46505 * 109.46807 * 124.99912 * 3 2 1 5 5 C 1.33959 * 122.78216 * 90.02864 * 4 3 2 6 6 O 1.21229 * 125.41246 * 0.02562 * 5 4 3 7 7 C 1.51453 * 109.17284 * 179.97438 * 5 4 3 8 8 C 1.53737 * 103.50512 * 359.91238 * 7 5 4 9 9 C 1.52440 * 110.36776 * 118.85219 * 8 7 5 10 10 C 1.53139 * 109.61020 * 182.31513 * 9 8 7 11 11 C 1.53178 * 109.29082 * 299.56611 * 10 9 8 12 12 N 1.46935 * 108.90411 * 55.08901 * 11 10 9 13 13 C 1.34776 * 120.68609 * 125.98147 * 12 11 10 14 14 O 1.21283 * 119.99669 * 179.97438 * 13 12 11 15 15 C 1.50697 * 120.00054 * 359.97016 * 13 12 11 16 16 C 1.53006 * 109.47100 * 180.02562 * 15 13 12 17 17 C 1.50705 * 109.47025 * 180.02562 * 16 15 13 18 18 H 1.07995 * 119.99773 * 359.97438 * 17 16 15 19 19 C 1.37872 * 119.99795 * 179.97438 * 17 16 15 20 20 N 1.31518 * 120.00149 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00145 * 179.97438 * 19 17 16 22 22 H 1.48493 * 109.47044 * 89.99900 * 21 19 17 23 23 H 1.48491 * 109.47075 * 210.00395 * 21 19 17 24 24 H 1.48502 * 109.46804 * 330.00321 * 21 19 17 25 25 C 1.47047 * 118.62524 * 305.95175 * 12 11 10 26 26 C 1.34047 * 122.78571 * 270.02063 * 4 3 2 27 27 O 1.21226 * 125.50173 * 0.02562 * 26 4 3 28 28 H 1.08001 * 120.00656 * 0.02562 * 1 2 3 29 29 H 1.08006 * 119.99428 * 179.97438 * 1 2 3 30 30 H 1.08001 * 120.00656 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47256 * 5.00028 * 3 2 1 32 32 H 1.08996 * 109.47082 * 244.99768 * 3 2 1 33 33 H 1.09002 * 110.64420 * 118.46398 * 7 5 4 34 34 H 1.08996 * 110.64389 * 241.36871 * 7 5 4 35 35 H 1.09000 * 109.45187 * 302.36487 * 9 8 7 36 36 H 1.09001 * 109.44256 * 62.27350 * 9 8 7 37 37 H 1.08997 * 109.49595 * 179.62059 * 10 9 8 38 38 H 1.09002 * 109.52935 * 59.53076 * 10 9 8 39 39 H 1.08997 * 109.56312 * 295.25934 * 11 10 9 40 40 H 1.08996 * 109.65775 * 174.96935 * 11 10 9 41 41 H 1.09005 * 109.47299 * 299.99976 * 15 13 12 42 42 H 1.08997 * 109.47011 * 60.00326 * 15 13 12 43 43 H 1.09005 * 109.46351 * 299.99732 * 16 15 13 44 44 H 1.08993 * 109.47116 * 59.99882 * 16 15 13 45 45 H 0.96997 * 119.99995 * 179.97438 * 20 19 17 46 46 H 1.08999 * 109.58539 * 292.93733 * 25 12 11 47 47 H 1.09005 * 109.69638 * 172.59757 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9936 1.3320 1.1315 5 6 4.2533 0.8846 1.0456 6 8 4.7662 0.4163 0.0519 7 6 4.9353 1.0579 2.3867 8 6 3.8435 1.6891 3.2658 9 6 3.5198 0.7791 4.4451 10 6 2.3913 1.3964 5.2762 11 6 2.8408 2.7622 5.8044 12 7 3.2668 3.5943 4.6708 13 6 2.7342 4.8171 4.4767 14 8 3.0953 5.4936 3.5371 15 6 1.6899 5.3436 5.4271 16 6 1.2550 6.7418 4.9832 17 6 0.2111 7.2686 5.9341 18 1 -0.1102 6.6663 6.7709 19 6 -0.3336 8.5195 5.7356 20 7 0.0574 9.2528 4.7162 21 14 -1.6280 9.1723 6.9137 22 1 -0.9646 9.9093 8.0190 23 1 -2.5422 10.0888 6.1862 24 1 -2.4060 8.0375 7.4724 25 6 4.2866 3.0657 3.7528 26 6 2.6549 1.8064 2.3386 27 8 1.5709 2.2587 2.6384 28 1 -0.5401 0.9353 -0.0004 29 1 -0.5399 -0.9354 -0.0004 30 1 1.8501 -0.9353 0.0004 31 1 1.3584 2.1317 0.0896 32 1 2.6212 1.4027 -0.9313 33 1 5.2424 0.0926 2.7892 34 1 5.7918 1.7262 2.2988 35 1 3.2059 -0.1969 4.0750 36 1 4.4070 0.6624 5.0676 37 1 2.1569 0.7410 6.1150 38 1 1.5058 1.5207 4.6529 39 1 3.6744 2.6305 6.4941 40 1 2.0122 3.2462 6.3213 41 1 0.8273 4.6773 5.4246 42 1 2.1068 5.3946 6.4329 43 1 2.1175 7.4083 4.9855 44 1 0.8380 6.6904 3.9775 45 1 -0.3261 10.1327 4.5764 46 1 5.2391 2.9791 4.2756 47 1 4.3973 3.7366 2.9008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269991453.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:16:21 Heat of formation + Delta-G solvation = -107.747831 kcal Electronic energy + Delta-G solvation = -30046.761974 eV Core-core repulsion = 26001.061855 eV Total energy + Delta-G solvation = -4045.700120 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 334.173 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.38314 -41.00766 -39.75775 -38.37027 -37.16722 -35.96023 -35.60358 -34.07664 -33.02511 -32.69974 -29.58240 -27.95320 -27.53772 -26.29685 -25.35498 -23.48739 -23.17253 -22.48533 -21.08378 -20.46708 -19.44400 -18.82715 -18.38273 -17.80138 -17.68293 -17.40113 -16.74476 -16.53551 -16.43128 -16.11670 -15.74785 -15.58034 -15.28076 -15.07456 -14.83828 -14.62436 -14.50137 -14.29171 -14.18852 -13.75230 -13.57281 -13.51800 -13.34084 -13.17289 -12.86937 -12.80978 -12.54645 -12.48661 -12.13388 -11.98538 -11.94978 -11.79568 -11.57470 -11.38644 -11.31690 -10.96668 -10.89232 -10.65468 -10.58184 -10.54250 -9.58982 -8.19001 -6.33595 0.43292 0.92270 1.40598 1.44213 1.55076 1.58559 1.67171 1.75309 2.04817 2.42410 2.96153 3.08939 3.13675 3.34834 3.49159 3.72890 3.85859 3.86852 3.92496 4.12007 4.14539 4.19454 4.32621 4.38712 4.47580 4.50656 4.51708 4.55322 4.61122 4.65471 4.79176 4.81159 4.83640 4.94192 4.99355 5.09608 5.18304 5.45358 5.45808 5.46917 5.55210 5.60020 5.63565 5.76872 5.83021 6.16088 6.25862 6.40367 6.69993 6.84461 7.28092 7.36841 8.93937 Molecular weight = 334.17amu Principal moments of inertia in cm(-1) A = 0.014955 B = 0.003080 C = 0.002873 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.784382 B = 9088.718951 C = 9742.708598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.187 4.187 3 C 0.118 3.882 4 N -0.577 5.577 5 C 0.526 3.474 6 O -0.514 6.514 7 C -0.132 4.132 8 C -0.100 4.100 9 C -0.091 4.091 10 C -0.145 4.145 11 C 0.101 3.899 12 N -0.608 5.608 13 C 0.515 3.485 14 O -0.594 6.594 15 C -0.114 4.114 16 C 0.046 3.954 17 C -0.543 4.543 18 H 0.076 0.924 19 C -0.008 4.008 20 N -0.939 5.939 21 Si 0.976 3.024 22 H -0.268 1.268 23 H -0.286 1.286 24 H -0.255 1.255 25 C 0.125 3.875 26 C 0.524 3.476 27 O -0.495 6.495 28 H 0.093 0.907 29 H 0.125 0.875 30 H 0.121 0.879 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.167 0.833 34 H 0.147 0.853 35 H 0.085 0.915 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.048 0.952 39 H 0.108 0.892 40 H 0.082 0.918 41 H 0.090 0.910 42 H 0.106 0.894 43 H -0.017 1.017 44 H -0.027 1.027 45 H 0.263 0.737 46 H 0.130 0.870 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.413 -27.152 0.405 29.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.206 4.206 3 C -0.002 4.002 4 N -0.320 5.320 5 C 0.318 3.682 6 O -0.388 6.388 7 C -0.171 4.171 8 C -0.104 4.104 9 C -0.129 4.129 10 C -0.183 4.183 11 C -0.020 4.020 12 N -0.341 5.341 13 C 0.306 3.694 14 O -0.475 6.475 15 C -0.154 4.154 16 C 0.008 3.992 17 C -0.580 4.580 18 H 0.094 0.906 19 C -0.205 4.205 20 N -0.579 5.579 21 Si 0.799 3.201 22 H -0.193 1.193 23 H -0.212 1.212 24 H -0.179 1.179 25 C 0.003 3.997 26 C 0.313 3.687 27 O -0.367 6.367 28 H 0.111 0.889 29 H 0.143 0.857 30 H 0.139 0.861 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.185 0.815 34 H 0.165 0.835 35 H 0.104 0.896 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.067 0.933 39 H 0.126 0.874 40 H 0.101 0.899 41 H 0.109 0.891 42 H 0.124 0.876 43 H 0.002 0.998 44 H -0.009 1.009 45 H 0.071 0.929 46 H 0.148 0.852 47 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 10.240 -26.636 -0.548 28.542 hybrid contribution -1.159 1.198 -0.590 1.768 sum 9.082 -25.438 -1.138 27.034 Atomic orbital electron populations 1.24138 0.95555 1.03166 0.96346 1.23023 0.96469 0.97496 1.03629 1.20879 0.92534 0.97648 0.89173 1.47080 1.14994 1.56497 1.13393 1.21511 0.80674 0.74211 0.91841 1.90758 1.68562 1.42832 1.36661 1.22722 0.98357 1.07560 0.88466 1.21663 0.92420 0.99225 0.97072 1.21529 1.01344 0.96492 0.93506 1.22070 0.98745 0.96116 1.01328 1.22064 1.01887 0.90882 0.87203 1.48140 1.40971 1.15624 1.29325 1.21241 0.81744 0.81181 0.85266 1.90622 1.63439 1.59336 1.34063 1.21586 0.96779 0.98109 0.98887 1.18659 0.94693 0.91258 0.94575 1.21696 1.22525 1.01846 1.11977 0.90605 1.26173 0.99574 0.97359 0.97396 1.70191 1.44892 1.11564 1.31225 0.85292 0.78123 0.78441 0.78221 1.19330 1.21215 1.17918 1.21591 0.92556 0.91051 0.94538 1.21383 0.89959 0.74530 0.82808 1.90765 1.26341 1.41421 1.78124 0.88852 0.85716 0.86071 0.90263 0.87949 0.81501 0.83502 0.89635 0.85369 0.87120 0.93324 0.87413 0.89946 0.89137 0.87553 0.99819 1.00888 0.92861 0.85206 0.92028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 14.32 67.79 0.97 -1.82 16 2 C -0.19 -3.66 9.85 25.66 0.25 -3.40 16 3 C 0.12 2.74 6.00 85.63 0.51 3.25 16 4 N -0.58 -13.22 2.54 -760.32 -1.93 -15.15 16 5 C 0.53 10.10 8.09 88.02 0.71 10.81 16 6 O -0.51 -12.66 17.48 -2.87 -0.05 -12.71 16 7 C -0.13 -1.24 6.29 30.34 0.19 -1.05 16 8 C -0.10 -1.53 0.69 -52.84 -0.04 -1.57 16 9 C -0.09 -0.82 4.52 30.46 0.14 -0.68 16 10 C -0.14 -2.10 5.81 30.70 0.18 -1.92 16 11 C 0.10 1.82 6.33 86.36 0.55 2.37 16 12 N -0.61 -16.63 2.55 -819.76 -2.09 -18.72 16 13 C 0.52 21.22 7.70 87.66 0.67 21.89 16 14 O -0.59 -30.62 15.41 -3.04 -0.05 -30.66 16 15 C -0.11 -4.92 3.99 29.85 0.12 -4.80 16 16 C 0.05 2.68 4.26 29.85 0.13 2.81 16 17 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 18 H 0.08 4.06 7.74 -2.91 -0.02 4.03 16 19 C -0.01 -0.46 5.46 84.65 0.46 0.00 16 20 N -0.94 -61.15 13.29 21.45 0.28 -60.87 16 21 Si 0.98 45.22 29.54 68.60 2.03 47.25 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 24 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 25 C 0.13 2.58 4.94 86.14 0.43 3.00 16 26 C 0.52 13.25 6.52 87.93 0.57 13.82 16 27 O -0.50 -17.02 15.00 -2.86 -0.04 -17.07 16 28 H 0.09 1.86 7.84 -2.91 -0.02 1.84 16 29 H 0.12 1.68 8.06 -2.91 -0.02 1.66 16 30 H 0.12 2.12 8.06 -2.91 -0.02 2.09 16 31 H 0.08 2.10 7.49 -2.39 -0.02 2.08 16 32 H 0.10 2.24 7.83 -2.39 -0.02 2.22 16 33 H 0.17 0.27 7.72 -2.39 -0.02 0.25 16 34 H 0.15 0.86 7.72 -2.39 -0.02 0.84 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.13 0.18 8.14 -2.39 -0.02 0.16 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.05 1.12 5.97 -2.39 -0.01 1.11 16 39 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 40 H 0.08 1.70 5.93 -2.39 -0.01 1.68 16 41 H 0.09 3.69 7.71 -2.38 -0.02 3.67 16 42 H 0.11 3.93 7.93 -2.39 -0.02 3.91 16 43 H -0.02 -1.09 8.10 -2.38 -0.02 -1.10 16 44 H -0.03 -1.84 8.10 -2.39 -0.02 -1.86 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 46 H 0.13 1.52 8.14 -2.39 -0.02 1.50 16 47 H 0.06 1.73 7.02 -2.38 -0.02 1.71 16 Total: -1.00 -92.33 383.23 5.19 -87.13 By element: Atomic # 1 Polarization: 8.82 SS G_CDS: 0.97 Total: 9.79 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: 6.08 Total: 11.01 kcal Atomic # 7 Polarization: -91.00 SS G_CDS: -3.74 Total: -94.73 kcal Atomic # 8 Polarization: -60.30 SS G_CDS: -0.14 Total: -60.44 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Total: -92.33 5.19 -87.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269991453.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.615 kcal (2) G-P(sol) polarization free energy of solvation -92.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.133 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds